Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles
comparison data_manager/install_primer_scheme_bedfiles.xml @ 1:cce5d9327cd6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit c78a20041ead5aa639003db5311d7a0d88e204b6"
author | iuc |
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date | Fri, 24 Apr 2020 16:10:30 -0400 |
parents | ae730ecdc7e7 |
children | b3710e492ee4 |
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0:ae730ecdc7e7 | 1:cce5d9327cd6 |
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1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.8" tool_type="manage_data" profile="19.05"> | 1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.10" tool_type="manage_data" profile="19.05"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package">python</requirement> | 3 <requirement type="package">python</requirement> |
4 <requirement type="package" version="2.22.0">requests</requirement> | 4 <requirement type="package" version="2.22.0">requests</requirement> |
5 </requirements> | 5 </requirements> |
6 <!-- fetch all the primers in one go --> | 6 <!-- fetch all the primers in one go --> |
21 <option value="ARTIC" selected="true">ARTIC SARS-CoV-2 Github page</option> | 21 <option value="ARTIC" selected="true">ARTIC SARS-CoV-2 Github page</option> |
22 <option value="history">History</option> | 22 <option value="history">History</option> |
23 </param> | 23 </param> |
24 <when value="ARTIC"> | 24 <when value="ARTIC"> |
25 <param name="primers" type="select" multiple="true" label="SARS-CoV-2 Primers to fetch"> | 25 <param name="primers" type="select" multiple="true" label="SARS-CoV-2 Primers to fetch"> |
26 <option value="ARTICv1" selected="true">ARTIC v1</option> | 26 <option value="SARS-CoV-2-ARTICv1" selected="true">SARS-CoV-2 ARTIC v1</option> |
27 <option value="ARTICv2" selected="true">ARTIC v2</option> | 27 <option value="SARS-CoV-2-ARTICv2" selected="true">SARS-CoV-2 ARTIC v2</option> |
28 <option value="ARTICv3" selected="true">ARTIC v3</option> | 28 <option value="SARS-CoV-2-ARTICv3" selected="true">SARS-CoV-2 ARTIC v3</option> |
29 </param> | 29 </param> |
30 </when> | 30 </when> |
31 <when value="history"> | 31 <when value="history"> |
32 <param name="primer_input" label="Select history item" type="data" format="bed" /> | 32 <param name="primer_input" label="Select history item" type="data" format="bed" /> |
33 <param name="primer_name" label="Name for this primer scheme" type="text" | 33 <param name="primer_name" label="Name for this primer scheme" type="text" |
40 <data name="output_file" format="data_manager_json"/> | 40 <data name="output_file" format="data_manager_json"/> |
41 </outputs> | 41 </outputs> |
42 <tests> | 42 <tests> |
43 <test> | 43 <test> |
44 <param name="input_type" value="ARTIC" /> | 44 <param name="input_type" value="ARTIC" /> |
45 <param name="primers" value="ARTICv1,ARTICv2,ARTICv3"/> | 45 <param name="primers" value="SARS-CoV-2-ARTICv1,SARS-CoV-2-ARTICv2,SARS-CoV-2-ARTICv3"/> |
46 <output name="output_file"> | 46 <output name="output_file"> |
47 <assert_contents> | 47 <assert_contents> |
48 <has_text text="ARTIC"/> | 48 <has_text text="ARTIC"/> |
49 </assert_contents> | 49 </assert_contents> |
50 </output> | 50 </output> |