comparison data_manager/data_manager_qiime_download.py @ 4:c4dba88e85ef draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 09b56ef3e09ad6c5923c88616fea5cbd77d87616

3:cc18f0f3514c

    """
    """
    archive_content_path = "tmp"
    if ext == "tar.gz" or ext == "tgz":
        with tarfile.open(filepath) as tar:
            tar.extractall(path=archive_content_path)
        archive_content_path = find_archive_content_path(archive_content_path)
    elif ext == "zip":
        with zipfile.ZipFile(filepath, 'r') as zip_ref:
            zip_ref.extractall(archive_content_path)
        archive_content_path = find_archive_content_path(archive_content_path)

4:c4dba88e85ef

    """
    """
    archive_content_path = "tmp"
    if ext == "tar.gz" or ext == "tgz":
        with tarfile.open(filepath) as tar:
            def is_within_directory(directory, target):
                abs_directory = os.path.abspath(directory)
                abs_target = os.path.abspath(target)
                prefix = os.path.commonprefix([abs_directory, abs_target])
                return prefix == abs_directory

            def safe_extract(tar, path=".", members=None, *, numeric_owner=False):
                for member in tar.getmembers():
                    member_path = os.path.join(path, member.name)
                    if not is_within_directory(path, member_path):
                        raise Exception("Attempted Path Traversal in Tar File")
                tar.extractall(path, members, numeric_owner=numeric_owner)

            safe_extract(tar, path=archive_content_path)
        archive_content_path = find_archive_content_path(archive_content_path)
    elif ext == "zip":
        with zipfile.ZipFile(filepath, 'r') as zip_ref:
            zip_ref.extractall(archive_content_path)
        archive_content_path = find_archive_content_path(archive_content_path)