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view data_manager_conf.xml @ 2:cbe065fbd038 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a
author iuc
date Mon, 23 Oct 2017 13:26:03 -0400
parents f8608fddfb23
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_qiime_download.xml" id="data_manager_qiime_download" >
        <data_table name="qiime_rep_set">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set/${dbkey}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set/${dbkey}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="qiime_rep_set_aligned">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set_aligned/${dbkey}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set_aligned/${dbkey}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="qiime_taxonomy">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_taxonomy/${dbkey}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_taxonomy/${dbkey}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="qiime_trees">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_trees/${dbkey}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_trees/${dbkey}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>