diff data_manager/data_manager_selection_background.xml @ 0:bb5794942b5e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_selection_background.xml	Fri Aug 20 21:03:25 2021 +0000
@@ -0,0 +1,46 @@
+<?xml version="1.0"?>
+<tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.1">
+    <description>for selection analysis</description>
+    <command detect_errors="exit_code">
+    <![CDATA[
+        python '$__tool_directory__/data_manager_selection_background.py' --out '$selection_background_json'
+        --dbkey '${dbkey}'
+        --label '${label}'
+        #if $data_source.source_selector == 'history':
+            --dataset '$data_source.dataset'
+        #else:
+            --uri '$data_source.uri'
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" />
+        <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" />
+        <conditional name="data_source">
+            <param name="source_selector" type="select" label="Source for the data">
+                <option value="uri">URL download</option>
+                <option value="history">Use a history dataset</option>
+            </param>
+            <when value="uri">
+                <param argument="--uri" type="text" label="URI for the sequences" />
+            </when>
+            <when value="history">
+                <param argument="--dataset" type="data" format="fasta" />
+            </when>
+        </conditional>
+    </inputs>
+    <outputs>
+        <data format="data_manager_json" name="selection_background_json" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="dbkey" value="CoV2-ORF6" />
+            <param name="label" value="SARS-CoV-2: ORF6" />
+            <param name="source_selector" value="history" />
+            <param name="dataset" value="selection-in1.fa" />
+            <output name="out_file" file="selection-out1.json" />
+        </test>
+    </tests>
+    <help>
+    </help>
+</tool>