Mercurial > repos > iuc > data_manager_snpeff
annotate data_manager_conf.xml @ 10:c6fbc5421697 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
| author | iuc |
|---|---|
| date | Sun, 22 Nov 2020 12:53:42 +0000 |
| parents | a6400027d849 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <data_managers> | |
| 3 <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" > | |
| 4 <data_table name="snpeffv_databases"> <!-- Defines a Data Table to be modified. --> | |
| 5 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 6 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 7 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 8 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 9 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 10 </output> | |
| 11 </data_table> | |
| 12 </data_manager> | |
| 13 <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" > | |
| 14 <data_table name="snpeffv_genomedb"> <!-- Defines a Data Table to be modified. --> | |
| 15 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 16 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 17 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 18 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 19 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 20 <column name="path" output_ref="out_file" > | |
| 21 <move type="directory" relativize_symlinks="True"> | |
|
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3d9dd4b9fb09
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1-dirty
iuc
parents:
2
diff
changeset
|
22 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/v4_3/data</target> |
| 0 | 23 </move> |
|
5
3d9dd4b9fb09
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1-dirty
iuc
parents:
2
diff
changeset
|
24 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/v4_3/data</value_translation> |
| 0 | 25 <value_translation type="function">abspath</value_translation> |
| 26 </column> | |
| 27 </output> | |
| 28 </data_table> | |
| 29 <data_table name="snpeffv_regulationdb"> <!-- Defines a Data Table to be modified. --> | |
| 30 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 31 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 32 <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 33 <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 34 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 35 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 36 </output> | |
| 37 </data_table> | |
| 38 </data_manager> | |
| 39 </data_managers> |