comparison data_manager/data_manager_snpEff_download.py @ 8:d107d20dc6bd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed

7:a6400027d849

    if return_code != 255:
        sys.exit( return_code )
    stderr_fh.close()
    fh = open(stderr_path, 'r')
    for line in fh:
        m = re.match('^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line)
        if m:
            snpeff_version = m.groups()[0] + m.groups()[1]
            break
    fh.close()
    return snpeff_version

8:d107d20dc6bd

    if return_code != 255:
        sys.exit( return_code )
    stderr_fh.close()
    fh = open(stderr_path, 'r')
    for line in fh:
        m = re.match(r'^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line)
        if m:
            snpeff_version = m.groups()[0] + m.groups()[1]
            break
    fh.close()
    return snpeff_version