Mercurial > repos > iuc > data_manager_snpeff
comparison data_manager/data_manager_snpEff_download.py @ 8:d107d20dc6bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author | iuc |
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date | Tue, 30 Oct 2018 18:44:05 -0400 |
parents | a6400027d849 |
children | 08d7998c3afb |
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7:a6400027d849 | 8:d107d20dc6bd |
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61 if return_code != 255: | 61 if return_code != 255: |
62 sys.exit( return_code ) | 62 sys.exit( return_code ) |
63 stderr_fh.close() | 63 stderr_fh.close() |
64 fh = open(stderr_path, 'r') | 64 fh = open(stderr_path, 'r') |
65 for line in fh: | 65 for line in fh: |
66 m = re.match('^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line) | 66 m = re.match(r'^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line) |
67 if m: | 67 if m: |
68 snpeff_version = m.groups()[0] + m.groups()[1] | 68 snpeff_version = m.groups()[0] + m.groups()[1] |
69 break | 69 break |
70 fh.close() | 70 fh.close() |
71 return snpeff_version | 71 return snpeff_version |