comparison data_manager/data_manager_snpEff_download.py @ 11:def511e8e005 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 00d1775d87af54665ec1871f021bcec6b4b7a15a"

10:c6fbc5421697

    # Create SnpEff Reference Data
    for genome_version, organism in zip(options.genome_version.split(','), getOrganismNames(options.genome_version, options.organism).split(',')):
        download_database(data_manager_dict, target_directory, genome_version, organism)

    # save info to json file
    with open(filename, 'w'):
        json.dump(data_manager_dict, fh, sort_keys=True)


if __name__ == "__main__":
    main()

11:def511e8e005

    # Create SnpEff Reference Data
    for genome_version, organism in zip(options.genome_version.split(','), getOrganismNames(options.genome_version, options.organism).split(',')):
        download_database(data_manager_dict, target_directory, genome_version, organism)

    # save info to json file
    with open(filename, 'w') as fh:
        json.dump(data_manager_dict, fh, sort_keys=True)


if __name__ == "__main__":
    main()