Mercurial > repos > iuc > data_manager_snpeff
diff data_manager/data_manager_snpEff_download.xml @ 7:a6400027d849 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
author | iuc |
---|---|
date | Tue, 24 Oct 2017 07:27:38 -0400 |
parents | 3d9dd4b9fb09 |
children | 08d7998c3afb |
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--- a/data_manager/data_manager_snpEff_download.xml Tue Apr 18 12:56:13 2017 -0400 +++ b/data_manager/data_manager_snpEff_download.xml Tue Oct 24 07:27:38 2017 -0400 @@ -1,7 +1,7 @@ -<tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.3k" tool_type="manage_data"> +<tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.3r" tool_type="manage_data"> <description>Download a new database</description> <requirements> - <requirement type="package" version="4.3k">snpeff</requirement> + <requirement type="package" version="4.3.1r">snpeff</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/data_manager_snpEff_download.py' @@ -25,15 +25,14 @@ <!-- Check that a genome was added --> <has_text text="GRCh38.76" /> <has_text text="snpeffv_regulationdb" /> - <has_text text="snpeffv_annotations" /> </assert_contents> </output> </test> </tests> <help><![CDATA[ -This tool downloads a SnpEff database and populates the data tables: snpeffv_genomedb, snpeffv_regulationdb, and snpeffv_annotations. +This tool downloads a SnpEff database and populates the data tables: snpeffv_genomedb, snpeffv_regulationdb. -To see the list of available SnpEff genomes run the "SnpEff Databases" data manager which records the available genome databases in data table: snpeff4_databases +To see the list of available SnpEff genomes, run the "SnpEff Databases" data manager which records the available genome databases in data table: snpeffv_databases. The SnpEff genome databases are at: http://sourceforge.net/projects/snpeff/files/databases/