Mercurial > repos > iuc > data_manager_snpeff

view data_manager_conf.xml @ 11:def511e8e005 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit 00d1775d87af54665ec1871f021bcec6b4b7a15a"
author iuc
date Tue, 24 Nov 2020 07:27:28 +0000
parents a6400027d849
children
line wrap: on
line source

<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager/data_manager_snpEff_databases.xml" id="data_manager_snpeff_databases" >
    <data_table name="snpeffv_databases">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager/data_manager_snpEff_download.xml" id="data_manager_snpeff_download" >
    <data_table name="snpeffv_genomedb">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="path" output_ref="out_file" >
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">snpEff/v4_3/data</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/snpEff/v4_3/data</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="snpeffv_regulationdb">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="genome" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
      </output>
    </data_table>
  </data_manager>
</data_managers>