comparison data_manager/macros.xml @ 1:cdc4d8a998e1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
author iuc
date Fri, 21 Apr 2017 12:36:31 -0400
parents
children 6ef6520f14fc
comparison
equal deleted inserted replaced
0:e4b87a00b1df 1:cdc4d8a998e1
1 <macros>
2 <xml name="requirements">
3 <requirements>
4 <requirement type="package" version="2.5.2b">star</requirement>
5 <requirement type="package" version="0.1.19">samtools</requirement>
6 </requirements>
7 </xml>
8 <token name="@FASTQ_GZ_OPTION@">
9 --readFilesCommand zcat
10 </token>
11 <xml name="citations">
12 <citations>
13 <citation type="doi">10.1093/bioinformatics/bts635</citation>
14 </citations>
15 </xml>
16 <xml name="@SJDBOPTIONS@">
17 <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/>
18 <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/>
19 </xml>
20 </macros>