Mercurial > repos > iuc > data_manager_star_index_builder
comparison tool-data/all_fasta.loc.sample @ 1:cdc4d8a998e1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
author | iuc |
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date | Fri, 21 Apr 2017 12:36:31 -0400 |
parents | e4b87a00b1df |
children |
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0:e4b87a00b1df | 1:cdc4d8a998e1 |
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2 #under the "genome" directory (a directory that contains a directory | 2 #under the "genome" directory (a directory that contains a directory |
3 #for each build). The script extract_fasta.py will generate the file | 3 #for each build). The script extract_fasta.py will generate the file |
4 #all_fasta.loc. This file has the format (white space characters are | 4 #all_fasta.loc. This file has the format (white space characters are |
5 #TAB characters): | 5 #TAB characters): |
6 # | 6 # |
7 #<unique_build_id> <dbkey> <display_name> <file_path> | 7 #<unique_build_id> <dbkey> <display_name> <file_path> |
8 # | 8 # |
9 #So, all_fasta.loc could look something like this: | 9 #So, all_fasta.loc could look something like this: |
10 # | 10 # |
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa |
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa |
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa |
14 # | 14 # |
15 #Your all_fasta.loc file should contain an entry for each individual | 15 #Your all_fasta.loc file should contain an entry for each individual |
16 #fasta file. So there will be multiple fasta files for each build, | 16 #fasta file. So there will be multiple fasta files for each build, |
17 #such as with hg19 above. | 17 #such as with hg19 above. |
18 # | 18 # |