comparison tool-data/rnastar_index2.loc.sample @ 2:f537d3e00eb8 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 811025ef8d9f60f4b02d66f7218127669fb42e0b

1:cdc4d8a998e1

#need to create these data files and then create a rnastar_index2.loc
#file similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The rnastar_index2.loc
#file has this format (longer white space characters are TAB characters):
#
#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<withGTF>
#
#The <with_gtf> column should be 1 or 0, indicating whether the index was made
#with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not,
#respecively.
#
#Note that STAR indices can become quite large. Consequently, it is only
#advisable to create indices with annotations if it's known ahead of time that

2:f537d3e00eb8

#need to create these data files and then create a rnastar_index2.loc
#file similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The rnastar_index2.loc
#file has this format (longer white space characters are TAB characters):
#
#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<with-gtf>
#
#The <with-gtf> column should be 1 or 0, indicating whether the index was made
#with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not,
#respecively.
#
#Note that STAR indices can become quite large. Consequently, it is only
#advisable to create indices with annotations if it's known ahead of time that