Mercurial > repos > iuc > data_manager_star_index_builder
comparison tool-data/rnastar_index2.loc.sample @ 2:f537d3e00eb8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 811025ef8d9f60f4b02d66f7218127669fb42e0b
author | iuc |
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date | Fri, 23 Jun 2017 04:26:07 -0400 |
parents | cdc4d8a998e1 |
children |
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1:cdc4d8a998e1 | 2:f537d3e00eb8 |
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3 #need to create these data files and then create a rnastar_index2.loc | 3 #need to create these data files and then create a rnastar_index2.loc |
4 #file similar to this one (store it in this directory) that points to | 4 #file similar to this one (store it in this directory) that points to |
5 #the directories in which those files are stored. The rnastar_index2.loc | 5 #the directories in which those files are stored. The rnastar_index2.loc |
6 #file has this format (longer white space characters are TAB characters): | 6 #file has this format (longer white space characters are TAB characters): |
7 # | 7 # |
8 #<unique_build_id> <dbkey> <display_name> <file_base_path> <withGTF> | 8 #<unique_build_id> <dbkey> <display_name> <file_base_path> <with-gtf> |
9 # | 9 # |
10 #The <with_gtf> column should be 1 or 0, indicating whether the index was made | 10 #The <with-gtf> column should be 1 or 0, indicating whether the index was made |
11 #with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not, | 11 #with an annotation (i.e., --sjdbGTFfile and --sjdbOverhang were used) or not, |
12 #respecively. | 12 #respecively. |
13 # | 13 # |
14 #Note that STAR indices can become quite large. Consequently, it is only | 14 #Note that STAR indices can become quite large. Consequently, it is only |
15 #advisable to create indices with annotations if it's known ahead of time that | 15 #advisable to create indices with annotations if it's known ahead of time that |