Mercurial > repos > iuc > data_manager_star_index_builder

diff data_manager/rna_star_index_builder.xml @ 5:f5eb9afa8f8a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 9b68f6ae375aed38493f8399b8572347c750336d
author iuc
date Thu, 15 Aug 2019 11:30:16 -0400
parents 6ef6520f14fc
children 64deddb6a8ec
line wrap: on
line diff
--- a/data_manager/rna_star_index_builder.xml	Wed Jul 18 13:26:12 2018 -0400
+++ b/data_manager/rna_star_index_builder.xml	Thu Aug 15 11:30:16 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="rna_star_index_builder_data_manager" name="rnastar index2" tool_type="manage_data" version="0.0.5" profile="17.01">
+<tool id="rna_star_index_builder_data_manager" name="rnastar index2" tool_type="manage_data" version="2.7.1a" profile="17.01">
     <description>builder</description>
 
     <macros>
@@ -41,15 +41,16 @@
 --config-file '${out_file}'
 --value '${all_fasta_source.fields.value}'
 --dbkey '${all_fasta_source.fields.dbkey}'
+--index-version '@IDX_VERSION@'
 #if $name:
     --name '$name'
 #else
     --name '${all_fasta_source.fields.name}'
 #end if
 #if str($GTFconditional.GTFselect) == "withGTF":
-    --withGTF 1
+    --with-gene-model
 #end if
---data-table rnastar_index2
+--data-table rnastar_index2_versioned
 --subdir '${subdir}'
     ]]></command>
     <inputs>