Mercurial > repos > iuc > data_manager_star_index_builder
view data_manager/macros.xml @ 3:50ca9af6db2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 4888c06bc87c2b236fae379c4220a23aae036cd6
author | iuc |
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date | Mon, 15 Jan 2018 15:39:25 -0500 |
parents | cdc4d8a998e1 |
children | 6ef6520f14fc |
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<macros> <xml name="requirements"> <requirements> <requirement type="package" version="2.5.2b">star</requirement> <requirement type="package" version="0.1.19">samtools</requirement> </requirements> </xml> <token name="@FASTQ_GZ_OPTION@"> --readFilesCommand zcat </token> <xml name="citations"> <citations> <citation type="doi">10.1093/bioinformatics/bts635</citation> </citations> </xml> <xml name="@SJDBOPTIONS@"> <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/> <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/> </xml> </macros>