view test-data/all_fasta.loc @ 11:d63c1442407f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:31:33 +0000
parents 64deddb6a8ec
children
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#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id>	<dbkey>		<display_name>	<file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3		/path/to/genome/apiMel3/apiMel3.fa
#hg19canon	hg19		Human (Homo sapiens): hg19 Canonical		/path/to/genome/hg19/hg19canon.fa
#hg19full	hg19		Human (Homo sapiens): hg19 Full			/path/to/genome/hg19/hg19full.fa
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#
phiX174	phiX174	phiX174	${__HERE__}/phiX174.fasta