annotate tool-data/vep_versioned_annotation_cache.loc.sample @ 0:1439dface5bf draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
author iuc
date Wed, 11 May 2022 13:03:06 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
1 #This file describes vep cache data and its metadata available on the server.
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
2 #The data table has the format (white space characters are TAB characters):
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
3 #
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
4 #<value> <dbkey> <version> <cachetype> <name> <species> <path>
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
5 #
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
6 #So, vep_versioned_annotation_cache.loc tables could look like this:
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
7 #
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
8 #homo_sapiens_vep_105_GRCh38 hg38 105 default Homo sapiens hg38 (V105) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/default
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
9 #homo_sapiens_refseq_vep_105_GRCh38 hg38 105 refseq Homo sapiens hg38 (V105, Refseq) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/refseq
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
10 #homo_sapiens_merged_vep_105_GRCh38 hg38 105 merged Homo sapiens hg38 (V105, Merged) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/merged
1439dface5bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vep_cache_downloader commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
11 #