comparison datamash-ops.xml @ 4:746e8e4bf929 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 384736acb5d2ae31d796c53031fad0e5da5424e3

3:419027d822d6

                $header_in
                $header_out
                $need_sort
                $print_full_line
                $ignore_case
                @FIELD_SEPARATOR@
                #if str($grouping) != ''
                    --group '$grouping'
                #end if
                #for $oper in $operations

        <param argument="--sort" name="need_sort" type="boolean" truevalue="--sort" falsevalue="" label="Sort input" help="Input file must be sorted by the grouping columns. Enable this option to automatically sort the input."/>
        <param argument="--header-in" type="boolean" truevalue="--header-in" falsevalue="" label="Input file has a header line" />
        <param argument="--header-out" type="boolean" truevalue="--header-out" falsevalue="" label="Print header line" />
        <param argument="--full" name="print_full_line" type="boolean" truevalue="--full" falsevalue="" label="Print all fields from input file" />
        <param argument="--ignore-case" type="boolean" truevalue="--ignore-case" falsevalue="" label="Ignore case when grouping" />
        <repeat name="operations" default="1" min="1" title="Operation to perform on each group">
            <param name="op_name" type="select" label="Type">
                <option value="count">count</option>
                <option value="sum">sum</option>
                <option value="min">minimum</option>

                    <has_n_lines n="7"/>
                    <has_line line="Arts,1310"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
<![CDATA[
@HELP_HEADER@

4:746e8e4bf929

                $header_in
                $header_out
                $need_sort
                $print_full_line
                $ignore_case
                $narm
                @FIELD_SEPARATOR@
                #if str($grouping) != ''
                    --group '$grouping'
                #end if
                #for $oper in $operations

        <param argument="--sort" name="need_sort" type="boolean" truevalue="--sort" falsevalue="" label="Sort input" help="Input file must be sorted by the grouping columns. Enable this option to automatically sort the input."/>
        <param argument="--header-in" type="boolean" truevalue="--header-in" falsevalue="" label="Input file has a header line" />
        <param argument="--header-out" type="boolean" truevalue="--header-out" falsevalue="" label="Print header line" />
        <param argument="--full" name="print_full_line" type="boolean" truevalue="--full" falsevalue="" label="Print all fields from input file" />
        <param argument="--ignore-case" type="boolean" truevalue="--ignore-case" falsevalue="" label="Ignore case when grouping" />
        <param argument="--narm" type="boolean" truevalue="--narm" falsevalue="" label="Skip NA or NaN values" />
        <repeat name="operations" default="1" min="1" title="Operation to perform on each group">
            <param name="op_name" type="select" label="Type">
                <option value="count">count</option>
                <option value="sum">sum</option>
                <option value="min">minimum</option>

                    <has_n_lines n="7"/>
                    <has_line line="Arts,1310"/>
                </assert_contents>
            </output>
        </test>
        <test><!-- test with a file containing NA and NaN values and the -narm parameter " -->
            <param name="in_file" value="na_values_input.tsv" ftype="tabular" />
            <param name="grouping" value="2" />
            <param name="header_in" value="true" />
            <param name="print_full_line" value="false" />
            <param name="need_sort" value="true" />
            <param name="narm" value="true" />
            <repeat name="operations">
                <param name="op_name" value="mean" />
                <param name="op_column" value="3" />
            </repeat>
            <output name="out_file" ftype="tabular">
                <assert_contents>
                    <has_n_lines n="2"/>
                    <has_line_matching expression="DE\t173.5"/>
                    <has_line_matching expression="NL\t177.5"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
<![CDATA[
@HELP_HEADER@