Mercurial > repos > iuc > deepvariant
comparison test-data/output.vcf @ 2:98fe794d2ec0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit 4255237ed7a51299e25bd7de7ad52ac5d419a56c
author | iuc |
---|---|
date | Sun, 04 Sep 2022 07:54:30 +0000 |
parents | 7608209110d3 |
children | 918c8b94c8d8 |
comparison
equal
deleted
inserted
replaced
1:b778a18bd878 | 2:98fe794d2ec0 |
---|---|
10 ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block."> | 10 ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block."> |
11 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> | 11 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> |
12 ##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions."> | 12 ##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions."> |
13 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer"> | 13 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer"> |
14 ##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer."> | 14 ##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer."> |
15 ##DeepVariant_version=1.2.0 | 15 ##DeepVariant_version=1.4.0 |
16 ##contig=<ID=K03455,length=9719> | 16 ##contig=<ID=K03455,length=9719> |
17 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 | 17 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SRR8525881 |
18 K03455 2652 . G A 23.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:201:0,200:0.995025:23,45,0 | 18 K03455 2652 . G A 24.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:201:0,200:0.995025:24,35,0 |
19 K03455 2660 . T C 25.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:213:0,213:1:25,45,0 | 19 K03455 2660 . T C 21.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:213:0,213:1:21,30,0 |
20 K03455 2664 . A G 21.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:238:0,238:1:21,45,0 | 20 K03455 2664 . A G 20.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:238:0,238:1:20,33,0 |
21 K03455 2669 . G A 20.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:258:0,250:0.968992:20,43,0 | 21 K03455 2669 . G A 16.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:258:0,250:0.968992:16,33,0 |
22 K03455 2720 . T C 31.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:384:0,380:0.989583:31,47,0 | 22 K03455 2720 . T C 34.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:384:0,380:0.989583:34,49,0 |
23 K03455 2797 . G A 39.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:669:0,666:0.995516:39,54,0 | 23 K03455 2797 . G A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:669:0,666:0.995516:38,43,0 |
24 K03455 2848 . T TA 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:820:85,704:0.858537:41,43,0 | 24 K03455 2848 . T TA 39.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:820:85,704:0.858537:39,39,0 |
25 K03455 2874 . C T 32 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:777:1,756:0.972973:32,45,0 | 25 K03455 2874 . C T 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:777:1,756:0.972973:34,46,0 |
26 K03455 2882 . G T 33.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:737:9,721:0.97829:33,49,0 | 26 K03455 2882 . G T 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:737:9,721:0.97829:34,47,0 |
27 K03455 2894 . T C 28.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:728:1,717:0.98489:28,51,0 | 27 K03455 2894 . T C 29.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:728:1,717:0.98489:29,51,0 |
28 K03455 2906 . C T 23.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:653:2,650:0.995406:23,53,0 | 28 K03455 2906 . C T 16 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:653:2,650:0.995406:15,33,0 |
29 K03455 2913 . G A 27.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:639:1,638:0.998435:27,53,0 | 29 K03455 2913 . G A 21.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:639:1,638:0.998435:21,40,0 |
30 K03455 2987 . C T 16.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:235:0,234:0.995745:16,38,0 | 30 K03455 2987 . C T 4.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:235:0,234:0.995745:1,21,0 |
31 K03455 3020 . A G 3.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:100:0,100:1:0,24,0 | 31 K03455 3020 . A G 13.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:100:0,100:1:13,20,0 |
32 K03455 3042 . A C 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:37:12:9,3:0.25:0,40,39 | 32 K03455 3042 . A C 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:32:12:9,3:0.25:0,36,33 |