Mercurial > repos > iuc > deepvariant
comparison deepvariant.xml @ 4:63b68fe4af85 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit d936ef547007b54a536787384cae90e98af2aede
| author | iuc |
|---|---|
| date | Tue, 05 Mar 2024 08:10:46 +0000 |
| parents | 918c8b94c8d8 |
| children |
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| 3:918c8b94c8d8 | 4:63b68fe4af85 |
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| 54 </when> | 54 </when> |
| 55 <when value="history"> | 55 <when value="history"> |
| 56 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" /> | 56 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" /> |
| 57 </when> | 57 </when> |
| 58 </conditional> | 58 </conditional> |
| 59 <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" /> | 59 <param argument="--reads" type="data" format="bam" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" /> |
| 60 <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling"> | 60 <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling"> |
| 61 <option value="WGS">WGS: Illumina whole genome sequencing</option> | 61 <option value="WGS">WGS: Illumina whole genome sequencing</option> |
| 62 <option value="WES">WES: Illumina whole exome sequencing</option> | 62 <option value="WES">WES: Illumina whole exome sequencing</option> |
| 63 <option value="PACBIO">PacBio HiFi</option> | 63 <option value="PACBIO">PacBio HiFi</option> |
| 64 <option value="HYBRID_PACBIO_ILLUMINA">Hybrid PacBio HiFi-Illumina</option> | 64 <option value="HYBRID_PACBIO_ILLUMINA">Hybrid PacBio HiFi-Illumina</option> |