Mercurial > repos > iuc > deg_annotate
diff test-data/dexseq_output.tabular @ 0:b42373cddb77 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deg_annotate commit bc766aeec78fe74a1d70d608d2f73ba3f2a3e047
| author | iuc |
|---|---|
| date | Fri, 23 Nov 2018 01:59:47 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dexseq_output.tabular Fri Nov 23 01:59:47 2018 -0500 @@ -0,0 +1,74 @@ +FBgn0000071:E001 FBgn0000071 E001 0.0192506486025934 14 0.0199243738540247 0.887748502701671 NA 0.0270972419820765 0.26215027289167 6.5484386673406 chr3R 6762593 6762996 404 + 1 0 0 0 0 0 0 FBtr0081618 +FBgn0000071:E002 FBgn0000071 E002 0.363216696948006 5.84518530646982 0.0113232157782903 0.915256583298 NA 1.1031345072124 0.623779161487839 -1.64605496381894 chr3R 6763404 6763500 97 + 7 0 0 7 0 0 2 FBtr0081619, FBtr0081620 +FBgn0000071:E003 FBgn0000071 E003 0.784502185963002 4.82131756123766 0.00622165600043445 0.937130080067176 NA 1.03116251478534 1.16708916978339 0.357665857300601 chr3R 6763501 6763516 16 + 31 0 0 7 0 0 1 FBtr0081619 +FBgn0000071:E004 FBgn0000071 E004 26.3510395213692 1.96800519978103 0.00561951934103888 0.940243790029249 1 5.42399545115501 5.87836276689312 0.238607928271459 chr3R 6763833 6765261 1429 + 965 0 1 183 0 0 82 FBtr0081619, FBtr0081618, FBtr0081620 +FBgn0025111+FBgn0003360:E001 FBgn0025111+FBgn0003360 E001 90.0645737707993 0.0126372415767218 266.729686621202 5.85700535276357e-60 7.03514197947196e-56 7.55262108655923 19.0700856066207 3.0486661948835 chrX 10778954 10779695 742 - 3297 1 0 555 1 0 341 FBtr0073425, FBtr0073426, FBtr0333963 +FBgn0025111+FBgn0003360:E002 FBgn0025111+FBgn0003360 E002 12.6315028999338 0.0374837624127616 69.0471690350968 9.6136433108249e-17 1.53965702170631e-13 2.85427512792234 8.93432009189011 3.38287587486196 chrX 10779993 10780120 128 - 483 0 0 54 0 0 54 FBtr0073425, FBtr0073426, FBtr0333963 +FBgn0025111+FBgn0003360:E003 FBgn0025111+FBgn0003360 E003 27.0879920211274 0.0102790782383009 240.828983563173 2.59388895137782e-54 2.07709980929831e-50 4.28496921256544 13.1457280028538 3.42758025357735 chrX 10780197 10780526 330 - 1025 0 0 135 0 0 111 FBtr0073425, FBtr0073426, FBtr0333963 +FBgn0025111+FBgn0003360:E004 FBgn0025111+FBgn0003360 E004 0.571953699696933 3.19738473523419 1.35362539704593 0.244645318616069 NA 0.664852761525701 1.62420816847541 2.58005011767578 chrX 10780527 10780595 69 - 19 0 0 4 0 0 3 FBtr0073425 +FBgn0025111+FBgn0003360:E005 FBgn0025111+FBgn0003360 E005 0.273966640920426 6.62572321505791 0.774068626605711 0.378961325638675 NA 0.41523701984849 1.17020080867011 2.99101950917789 chrX 10780596 10780661 66 - 10 0 0 0 0 0 2 FBtr0073425, FBtr0333963 +FBgn0025111+FBgn0003360:E006 FBgn0025111+FBgn0003360 E006 0.745311945942461 5.357718424361 1.46992595946872 0.225357375991809 NA 0.504555945672202 1.65071837177629 3.42315484512434 chrX 10780893 10780992 100 - 3 1 0 0 0 0 3 FBtr0073424 +FBgn0025111+FBgn0003360:E007 FBgn0025111+FBgn0003360 E007 545.847775517443 0.00833350838114172 207.741013858374 4.27292204331129e-47 2.56621015616168e-43 23.6260619029107 12.5792144461011 -2.2978357205501 chrX 10780993 10782095 1103 - 872 0 0 10527 11 2 7403 FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422 +FBgn0025111+FBgn0003360:E008 FBgn0025111+FBgn0003360 E008 81.6833873705682 0.211161242432226 2.10416871447788 0.146898156016142 1 10.4870761158077 4.81409558326169 -2.35561606761604 chrX 10782173 10782300 128 - 149 0 0 759 1 1 1518 FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422 +FBgn0025111+FBgn0003360:E009 FBgn0025111+FBgn0003360 E009 176.258300135302 0.0140072450761411 57.2712260328214 3.7966937524597e-14 5.7004983759587e-11 15.7453363154864 8.15612049317458 -2.12238613649047 chrX 10782380 10782680 301 - 316 0 0 3595 6 0 2253 FBtr0073424, FBtr0346384, FBtr0073421, FBtr0073423, FBtr0073422 +FBgn0025111+FBgn0003360:E010 FBgn0025111+FBgn0003360 E010 3.76512107787728 1.6130831872072 1.24033810568785 0.265405902564654 NA 1.68455418493543 3.44295065004409 2.07400290277306 chrX 10782777 10782889 113 - 102 0 0 28 0 1 16 FBtr0073424, FBtr0073422 +FBgn0025111+FBgn0003360:E011 FBgn0025111+FBgn0003360 E011 6.5089881698589 1.02475799543533 -0.106580642591283 1 NA 3.07929058112916 2.2118244557951 -0.960549001137653 chrX 10784351 10784458 108 - 31 0 0 111 1 0 76 FBtr0073424, FBtr0073423 +FBgn0025111+FBgn0003360:E012 FBgn0025111+FBgn0003360 E012 22.0575405017202 0.0173479362019806 2.32152361162917 0.127594993875348 1 6.39017502461232 6.6032995198819 0.09815730318011 chrX 10786806 10786907 102 - 197 0 0 317 0 0 285 FBtr0346384, FBtr0073426, FBtr0073421, FBtr0073422 +FBgn0025111+FBgn0003360:E013 FBgn0025111+FBgn0003360 E013 0 NA NA NA NA NA NA NA chrX 10786908 10786958 51 - 0 0 0 0 0 0 0 FBtr0346384 +FBgn0026562:E001 FBgn0026562 E001 4299.041544073 0.00625342738151494 1.77827176637058 0.182361686845687 1 36.5194509668555 33.7361367094768 -0.435882535950144 chr3R 26869238 26870130 893 - 13627 4 6 84306 135 12 53723 FBtr0334309, FBtr0085094 +FBgn0026562:E002 FBgn0026562 E002 1024.06189804715 0.00560547257675354 0.939414755157941 0.332428397109156 1 24.5398337222753 24.629231616686 0.0155625345990291 chr3R 26870193 26870372 180 - 3692 0 0 18790 21 4 13404 FBtr0334309, FBtr0085094 +FBgn0026562:E003 FBgn0026562 E003 1.92140950784035 1.7015300964077 0.376923806612751 0.539254178375272 NA 1.42457076601046 1.26750401004967 -0.337611245691172 chr3R 26870510 26870567 58 - 5 0 0 52 0 0 18 FBtr0334309 +FBgn0026562:E004 FBgn0026562 E004 306.429541014771 0.00117878749401876 13.995616047042 0.000183237370319748 0.0291517307761014 17.7208290356416 19.0193585523089 0.26135819832111 chr3R 26871926 26871995 70 - 1262 0 0 5769 7 0 3869 FBtr0085094 +FBgn0029167:E001 FBgn0029167 E001 7.15163067280428 0.669259959652248 -0.0392038520963212 1 NA 2.74695890844169 2.58894740553868 -0.172009700200948 chr3L 13846054 13846314 261 + 26 0 0 88 1 0 106 FBtr0075753, FBtr0333020 +FBgn0029167:E002 FBgn0029167 E002 4.72886203814498 1.13843148991516 -0.0386664920562936 1 NA 2.25463356874002 1.97202648887781 -0.3879451959838 chr3L 13846846 13846941 96 + 15 0 0 97 0 0 59 FBtr0075753, FBtr0333020 +FBgn0029167:E003 FBgn0029167 E003 6.69180056772761 0.791436676553325 0.0457459091909556 0.830638349471383 NA 2.67802783517603 2.09420242423742 -0.713077955723428 chr3L 13847022 13847186 165 + 16 0 0 116 1 0 85 FBtr0075753, FBtr0333020 +FBgn0029167:E004 FBgn0029167 E004 1.51828038200073 2.7971496317693 -0.0262292576180982 1 NA 1.30751672622035 0.936837206177554 -0.962975471057744 chr3L 13847248 13847250 3 + 3 0 0 23 0 0 24 FBtr0075753 +FBgn0029167:E005 FBgn0029167 E005 13.7712048894883 0.0102605515544869 2.99771074711222 0.0833822590822143 1 4.69304454778583 3.76317340436349 -0.647111867460705 chr3L 13847251 13847640 390 + 38 0 0 266 0 0 183 FBtr0075753, FBtr0333020 +FBgn0029167:E006 FBgn0029167 E006 6.08105670380655 1.04590312069569 -0.0530718183160417 1 NA 2.5554892382709 1.93358158066203 -0.808193164176312 chr3L 13847698 13847825 128 + 14 0 0 108 0 0 87 FBtr0075753, FBtr0333020 +FBgn0029167:E007 FBgn0029167 E007 4.11795883278261 1.47784545461153 -0.0417356446161534 1 NA 2.10086240357596 1.69907309139862 -0.614406935634533 chr3L 13847882 13847977 96 + 11 0 0 58 0 0 66 FBtr0075753, FBtr0333020 +FBgn0029167:E008 FBgn0029167 E008 8.26926273148314 0.381730230580169 -0.0430019251358402 1 1 3.06855855180953 2.63626248585919 -0.441264390352388 chr3L 13848081 13848278 198 + 24 0 0 172 0 0 103 FBtr0075753, FBtr0333020 +FBgn0029167:E009 FBgn0029167 E009 7.32106279656314 0.275989363694727 -0.0547881477615704 1 NA 2.94167742822873 2.88569868775361 -0.0558507973657094 chr3L 13848391 13848554 164 + 28 0 0 129 0 0 100 FBtr0075753, FBtr0333020 +FBgn0029167:E010 FBgn0029167 E010 7.49234483118778 0.720382621241126 -0.0492371805350444 1 1 2.84552416171752 2.35874079544255 -0.544571326136098 chr3L 13848611 13848768 158 + 21 0 0 194 0 0 74 FBtr0075753, FBtr0333020 +FBgn0029167:E011 FBgn0029167 E011 6.37215955335015 0.94507328288592 -0.0515679140055028 1 NA 2.61873796933053 2.06003019637004 -0.695731913902389 chr3L 13848830 13848984 155 + 16 0 0 153 0 0 70 FBtr0075753, FBtr0333020 +FBgn0029167:E012 FBgn0029167 E012 21.6830099134211 0.00966078697627001 1.93824343342354 0.16385938634027 1 5.75395811447781 4.94217111409413 -0.449800808299567 chr3L 13849050 13849652 603 + 67 0 0 397 0 0 296 FBtr0075753, FBtr0333020 +FBgn0029167:E013 FBgn0029167 E013 38.1261397146271 0.0106708922900478 0.249659521825734 0.617314920670667 1 7.2796145069794 7.00190143589797 -0.117227207675874 chr3L 13849795 13850913 1119 + 143 0 0 773 1 0 458 FBtr0075753, FBtr0333020 +FBgn0029167:E014 FBgn0029167 E014 42.8524424904919 0.00543827199514733 6.39551267918667 0.0114409184566855 0.526612058200166 7.96995708563333 6.61031884758919 -0.564667296958866 chr3L 13850996 13851889 894 + 122 0 0 798 0 0 583 FBtr0075753, FBtr0333020 +FBgn0029167:E015 FBgn0029167 E015 23.4482069573257 0.0206334844386547 0.0214833953053386 0.883469736905202 1 5.64849672651984 5.75176277590517 0.0537623241990586 chr3L 13851942 13852490 549 + 97 0 0 380 1 0 322 FBtr0075753, FBtr0333020 +FBgn0029167:E016 FBgn0029167 E016 64.5965483352241 0.00313770111627804 0.0931354984060562 0.760228232966537 1 9.49701844409952 9.52361538944403 0.00870241789730741 chr3L 13852567 13853889 1323 + 266 0 0 1157 4 0 816 FBtr0075753, FBtr0333020 +FBgn0029167:E017 FBgn0029167 E017 6.34418701479621 0.641687458102554 -0.0279983220690525 1 NA 2.631019849614 2.51683050848261 -0.128774450056878 chr3L 13853954 13854032 79 + 24 0 0 123 0 0 81 FBtr0075753, FBtr0333020 +FBgn0029167:E018 FBgn0029167 E018 13.6282428973941 0.0568553712322375 -0.0220266679541936 1 1 4.21980985487832 4.27256434360482 0.0364161128593739 chr3L 13854094 13854343 250 + 55 0 0 300 1 0 142 FBtr0075753, FBtr0333020 +FBgn0029167:E019 FBgn0029167 E019 37.0046496217164 0.0542796741127381 0.0120575405903054 0.912562571807181 1 6.45980457475192 6.82433641489946 0.164504372273914 chr3L 13854397 13855144 748 + 166 0 0 848 2 0 369 FBtr0075753, FBtr0333020 +FBgn0029167:E020 FBgn0029167 E020 27.4137663696225 0.0140808279405315 -0.000645266196897865 1 1 6.20312661180806 6.19298560590549 -0.00487967433429848 chr3L 13855205 13855690 486 + 111 0 0 556 1 0 322 FBtr0075753, FBtr0333020 +FBgn0029167:E021 FBgn0029167 E021 32.1379252991209 0.00539675007684137 0.00492384222850717 0.944058276390426 1 6.95596234560479 6.88173172555779 -0.0322516973240479 chr3L 13855751 13856257 507 + 133 0 0 621 0 0 406 FBtr0075753, FBtr0333020 +FBgn0029167:E022 FBgn0029167 E022 27.3509370832817 0.00993603693603888 0.17967276873685 0.671654608829781 1 6.27650481720362 6.48033741394852 0.0954967805269895 chr3L 13856322 13856805 484 + 120 0 0 537 1 0 326 FBtr0075753, FBtr0333020 +FBgn0029167:E023 FBgn0029167 E023 101.035151613508 0.00177812207833575 14.0268160910829 0.000180222035480899 0.0289097919874621 11.6190732557024 12.8612780874803 0.330745581476522 chr3L 13856870 13858647 1778 + 516 0 2 1817 2 0 1247 FBtr0075753, FBtr0333020 +FBgn0029167:E024 FBgn0029167 E024 18.8267081738284 0.00869743425143979 0.00731653589360803 0.931834678880136 1 5.36739732096657 5.31935346395099 -0.0265929226251549 chr3L 13858706 13858918 213 + 78 0 0 344 0 0 248 FBtr0075753, FBtr0333020 +FBgn0029167:E025 FBgn0029167 E025 37.796323158661 0.0335859452198008 0.51510201871362 0.472938533019722 1 6.63644865523637 7.10891029211558 0.206620684619216 chr3L 13858980 13859435 456 + 159 1 1 577 1 0 515 FBtr0075753, FBtr0333020 +FBgn0029167:E026 FBgn0029167 E026 21.009339514042 0.129683212399378 0.168415275969721 0.681524059333513 1 4.76508364271823 4.96385629677031 0.120367521774135 chr3L 13859492 13859748 257 + 83 0 1 266 1 0 313 FBtr0075753, FBtr0333020 +FBgn0029167:E027 FBgn0029167 E027 9.6365749241799 0.217580038761964 -0.0465416621519523 1 1 3.3273311611661 3.30296961506368 -0.0214084419953458 chr3L 13859806 13860001 196 + 37 0 0 140 1 0 135 FBtr0075753, FBtr0333020 +FBgn0034736:E001 FBgn0034736 E001 3.35726224343748 1.78484609963224 0.268679246157262 0.604219124146927 NA 1.44361199055548 2.21473519225744 1.23848594116766 chr2R 22550094 22550254 161 + 4 0 1 43 2 0 20 FBtr0071835 +FBgn0034736:E002 FBgn0034736 E002 31.3649392872418 1.50587689589588 0.287018839493982 0.592137292181566 1 4.7447147855441 3.49771820140553 -0.892839406307894 chr2R 22550320 22552113 1794 + 46 0 0 699 1 0 376 FBtr0071835 +FBgn0035085:E001 FBgn0035085 E001 38.523896467404 0.0671387752777912 0.440517347408175 0.506872859456901 1 6.19767057212486 5.74358383814322 -0.226399041442039 chr2R 24945139 24945664 526 + 96 0 0 831 0 0 472 FBtr0072393 +FBgn0035085:E002 FBgn0035085 E002 42.995726265042 0.048346362505174 0.153957099144804 0.694782135628495 1 6.54983495413991 6.64051219180657 0.0411807158685003 chr2R 24945665 24946163 499 + 124 1 0 650 0 0 648 FBtr0343502, FBtr0072393 +FBgn0035085:E003 FBgn0035085 E003 11.1822437908847 0.0252060599737455 0.0528031250827325 0.818255495082344 1 3.84382409807619 3.49576280275657 -0.277109497996343 chr2R 24946219 24946332 114 + 29 0 0 182 0 0 167 FBtr0343502, FBtr0072393 +FBgn0035085:E004 FBgn0035085 E004 9.11680909423206 0.0171459496586942 2.87479161509771 0.089976621379389 1 3.49964436083669 4.05326145311063 0.429051408269815 chr2R 24946383 24946636 254 + 39 0 0 154 0 0 126 FBtr0343502, FBtr0072393 +FBgn0039155:E001 FBgn0039155 E001 13.6712498657309 0.0463065083220391 0.120585595374735 0.72840023002436 1 2.82584300462209 3.05455255454249 0.226266381188417 chr3R 24141395 24141660 266 + 10 0 0 316 0 0 168 FBtr0084549 +FBgn0039155:E002 FBgn0039155 E002 42.7015734776506 0.0168969994681728 0.167642564676271 0.682215489960084 1 4.90177560166337 5.15884080320152 0.150757731546162 chr3R 24145193 24145870 678 + 29 0 0 750 0 0 648 FBtr0084549 +FBgn0039155:E003 FBgn0039155 E003 9.59400268282558 0.106779096337916 0.908702915845097 0.340458807683609 1 2.295297222532 1.37949280433586 -1.47336111077149 chr3R 24145930 24146048 119 + 2 0 0 135 0 0 165 FBtr0084549 +FBgn0039155:E004 FBgn0039155 E004 21.818733441502 0.0102195118081709 0.346088392922738 0.556335792123203 1 3.72178079518322 3.23201345868211 -0.411439521105551 chr3R 24146109 24146302 194 + 11 0 0 389 1 0 318 FBtr0084549 +FBgn0039155:E005 FBgn0039155 E005 33.6638874829461 0.0192821592660858 1.63087827191582 0.201581614240006 1 4.34400029242237 3.65686503916905 -0.503801897354084 chr3R 24146366 24146739 374 + 13 1 0 682 2 0 431 FBtr0084549 +FBgn0039155:E006 FBgn0039155 E006 6.29083274168577 0.0252516535063752 3.7437428395564 0.0530055867882575 NA 1.95416666238726 2.78389648685824 1.02609607038693 chr3R 24146801 24146867 67 + 7 1 0 113 0 0 79 FBtr0084549 +FBgn0039155:E007 FBgn0039155 E007 12.3243820234843 0.0262778274885892 2.13624519448128 0.143853608869934 1 2.67736324784513 3.39457417755365 0.690361764818206 chr3R 24147196 24147490 295 + 11 1 0 238 0 1 147 FBtr0084549 +FBgn0039827:E001 FBgn0039827 E001 2.63498804451882 0.0608176505616557 0.414823799440974 0.519531233750519 NA 1.59698175719074 1.14605646107818 -0.958911104309699 chr3R 31196916 31197135 220 + 2 0 0 48 0 0 39 FBtr0085755 +FBgn0039827:E002 FBgn0039827 E002 2.05937277346515 1.77137857854951 0.458134137387447 0.498497279931254 NA 1.19223115015567 0.0433668339050932 -9.56366021393415 chr3R 31199171 31199288 118 + 0 0 0 36 0 0 32 FBtr0085755 +FBgn0039827:E003 FBgn0039827 E003 1.93543290374953 0.123855592007312 0.400739231241019 0.526707733863682 NA 1.35176238289198 0.81056910682808 -1.47715610462916 chr3R 31199457 31199634 178 + 1 0 0 35 0 0 29 FBtr0085755 +FBgn0039827:E004 FBgn0039827 E004 3.28985825548349 0.0893690013877094 1.3505968811039 0.245173796359894 NA 1.58175203407803 2.19601130375313 0.949671751426194 chr3R 31199721 31199940 220 + 6 0 1 59 0 0 33 FBtr0085755 +FBgn0039827:E005 FBgn0039827 E005 3.71984502435892 0.105905873684463 0.107135509118166 0.743429186401977 NA 1.7435517258432 1.60688982797305 -0.236098009333743 chr3R 31200404 31200565 162 + 4 0 0 65 1 0 44 FBtr0085755 +FBgn0039827:E006 FBgn0039827 E006 1.49855059052996 0.142636861571954 0.251438625597252 0.616063913732651 NA 1.17582262214242 1.39184890589876 0.487369179091324 chr3R 31200909 31200982 74 + 3 0 0 24 0 0 23 FBtr0085755 +FBgn0039827:E007 FBgn0039827 E007 9.62489678410572 0.0167104742226843 0.0291662271828628 0.864395791606263 1 2.95394188431291 2.81385568422878 -0.141211731937923 chr3R 31201059 31201820 762 + 11 1 0 175 0 0 127 FBtr0085755 +FBgn0039827:E008 FBgn0039827 E008 8.16018283400104 0.0168806044751327 1.4042102686353 0.236019904522537 1 2.69695467533777 3.13897231666437 0.44119600007341 chr3R 31201881 31202298 418 + 14 0 1 142 0 0 106 FBtr0085755 +FBgn0039827:E009 FBgn0039827 E009 6.36726616885434 0.024157041511076 1.69280647573429 0.193231426709786 NA 2.48935040136838 1.81054974057187 -0.922389941550072 chr3R 31202355 31202678 324 + 5 0 0 126 0 0 89 FBtr0085755 +FBgn0039827:E010 FBgn0039827 E010 3.61313432079147 0.0615567372635995 0.118050038473861 0.731159078754113 NA 1.82539909664026 1.96967561924679 0.220187796338587 chr3R 31203048 31203236 189 + 6 0 0 56 0 0 57 FBtr0085755 +FBgn0039827:E011 FBgn0039827 E011 1.99064386054588 0.100802457520676 0.320881415004813 0.571078427721341 NA 1.35667514561751 1.60773535197048 0.490854902982875 chr3R 31203372 31203457 86 + 4 0 0 31 0 0 31 FBtr0085755 +FBgn0039827:E012 FBgn0039827 E012 2.19810573129925 0.0718896852308745 0.192314515449624 0.660997207527994 NA 1.44207416809348 1.61260405533928 0.323155632427585 chr3R 31203542 31203722 181 + 4 0 0 37 0 0 33 FBtr0085755 +FBgn0264475:E001 FBgn0264475 E001 109.782378649456 NA NA NA NA NA NA NA chr3L 820759 821512 754 + 348 1 0 1911 4 0 1484 FBtr0332751