comparison macros.xml @ 3:6f383714149d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d76130cdcb21f0390b4e68e733d38575fd5cc6c7"

2:9946bd542898

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">0.8.7</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">delly</requirement>
            <requirement type="package" version="1.10.2">bcftools</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command><![CDATA[delly -v 2>&1 | grep 'Delly version' | cut -f 3 -d ' ']]></version_command>
    </xml>
	<xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bts378</citation>
        </citations>
    </xml>
	
    <!-- command -->

    <token name="@BAM@"><![CDATA[
#for $i, $current in enumerate($input)
    ln -s '${current}' 'input_${i}.bam' &&

3:6f383714149d

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">0.9.1</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">delly</requirement>
            <requirement type="package" version="1.12">bcftools</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command><![CDATA[delly -v 2>&1 | grep 'Delly version' | cut -f 3 -d ' ']]></version_command>
    </xml>
	<xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bts378</citation>
        </citations>
    </xml>
    <xml name="bio_tools">
        <xrefs>
            <xref type="bio.tools">delly2</xref>
        </xrefs>
    </xml>
    <!-- command -->

    <token name="@BAM@"><![CDATA[
#for $i, $current in enumerate($input)
    ln -s '${current}' 'input_${i}.bam' &&