# HG changeset patch # User iuc # Date 1611325965 0 # Node ID ceda4714f3a14f8ce5c67489bb53f274bd0ad144 # Parent d5124d5c8131483d58730bdc8dc3a32e138a9bee "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d18d984264f54b45e94d97b5b97ed499a32a334a" diff -r d5124d5c8131 -r ceda4714f3a1 lr.xml --- a/lr.xml Thu Oct 29 20:51:54 2020 +0000 +++ b/lr.xml Fri Jan 22 14:32:45 2021 +0000 @@ -9,7 +9,7 @@ - +
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@@ -279,15 +287,13 @@ @WID@ -Delly *long-read (lr)* uses the long-read SV discovery mode. - **Input** -Delly *long-read (lr)* needs a sorted, indexed and duplicate marked BAM file for every input sample. An indexed reference genome is required to identify split-reads. Additionally a VCF/BCF file for genotyping can be applied. +Delly *long-read (lr)* needs a sorted, indexed and duplicate marked BAM file for every input sample. An indexed reference genome is required to identify split-reads. **Output** -The output is available in BCF and VCF format. Additionally an output file for SV-reads is provided. +The output is available in BCF and VCF format. Additionally an output file for SV-reads and a log file are provided. .. class:: infomark diff -r d5124d5c8131 -r ceda4714f3a1 macros.xml --- a/macros.xml Thu Oct 29 20:51:54 2020 +0000 +++ b/macros.xml Fri Jan 22 14:32:45 2021 +0000 @@ -1,6 +1,6 @@ - 0.8.5 + 0.8.7 0 @@ -17,14 +17,12 @@ - + - + + + + + + + - + + + + + + + + + + - - + + - - - - - - - + - - + + + + + - - + + + + + + - - + - + + + + 'bcf' in oo['out'] + + 'vcf' in oo['out'] - - - 'bcf' in oo['out'] - - 'dump' in oo['out'] @@ -116,12 +125,25 @@ - + `_.