# HG changeset patch
# User iuc
# Date 1611325965 0
# Node ID ceda4714f3a14f8ce5c67489bb53f274bd0ad144
# Parent d5124d5c8131483d58730bdc8dc3a32e138a9bee
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d18d984264f54b45e94d97b5b97ed499a32a334a"
diff -r d5124d5c8131 -r ceda4714f3a1 lr.xml
--- a/lr.xml Thu Oct 29 20:51:54 2020 +0000
+++ b/lr.xml Fri Jan 22 14:32:45 2021 +0000
@@ -9,7 +9,7 @@
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@@ -140,11 +143,6 @@
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@@ -279,15 +287,13 @@
@WID@
-Delly *long-read (lr)* uses the long-read SV discovery mode.
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**Input**
-Delly *long-read (lr)* needs a sorted, indexed and duplicate marked BAM file for every input sample. An indexed reference genome is required to identify split-reads. Additionally a VCF/BCF file for genotyping can be applied.
+Delly *long-read (lr)* needs a sorted, indexed and duplicate marked BAM file for every input sample. An indexed reference genome is required to identify split-reads.
**Output**
-The output is available in BCF and VCF format. Additionally an output file for SV-reads is provided.
+The output is available in BCF and VCF format. Additionally an output file for SV-reads and a log file are provided.
.. class:: infomark
diff -r d5124d5c8131 -r ceda4714f3a1 macros.xml
--- a/macros.xml Thu Oct 29 20:51:54 2020 +0000
+++ b/macros.xml Fri Jan 22 14:32:45 2021 +0000
@@ -1,6 +1,6 @@
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+ 'bcf' in oo['out']
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'vcf' in oo['out']
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`_.