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comparison test-data/sailfish_quant_result4.tab @ 6:4939397c4706 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 3bc8d91ee546682ef8e9303bd1044bb14cf21b07
author iuc
date Wed, 09 Nov 2016 17:00:31 -0500
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5:d38fd393402e 6:4939397c4706
1 # sailfish (quasi-mapping-based) v0.7.6
2 # [ program ] => sailfish
3 # [ command ] => quant
4 # [ index ] => { ./index_dir }
5 # [ mates1 ] => { ./mate1.fastq }
6 # [ mates2 ] => { ./mate2.fastq }
7 # [ libType ] => { IU }
8 # [ output ] => { ./ }
9 # [ biasCorrect ] => { }
10 # [ threads ] => { 1 }
11 # [ fldMean ] => { 200 }
12 # [ fldSD ] => { 80 }
13 # [ maxReadOcc ] => { 200 }
14 # [ maxFragLen ] => { 1000 }
15 # [ txpAggregationKey ] => { gene_id }
16 # [ mapping rate ] => { 100% }
17 # Name Length TPM NumReads
18 NM_001168316 2283 12398.5 15.361
19 NM_174914 2385 111260 120.04
20 NR_031764 1853 10300.5 12.595
21 NM_004503 1681 36250.8 32.806
22 NM_006897 1541 80900.3 75
23 NM_014212 2037 4900.08 540
24 NM_014620 2300 45300.7 51.838
25 NM_017409 1959 4400.19 470
26 NM_017410 2396 3500.5 420
27 NM_018953 1612 26568.3 30
28 NM_022658 2288 378938 480
29 NM_153633 1666 40878.4 3350.074
30 NM_153693 2072 6830.57 740.2815
31 NM_173860 849 240818 90
32 NR_003084 1640 20 95