Mercurial > repos > iuc > deseq2
comparison deseq2.xml @ 26:6a3a025714d3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 0b502ee6bfa3e861c8678cabfeb670dc8dfe9519"
author | iuc |
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date | Fri, 08 Jan 2021 20:29:54 +0000 |
parents | de44f8eff84a |
children | d027d1f4984e |
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25:de44f8eff84a | 26:6a3a025714d3 |
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38 ln -s '$tximport.mapping_format.gtf_file' mapping.gff && | 38 ln -s '$tximport.mapping_format.gtf_file' mapping.gff && |
39 #else: | 39 #else: |
40 ln -s '$tximport.mapping_format.tabular_file' mapping.txt && | 40 ln -s '$tximport.mapping_format.tabular_file' mapping.txt && |
41 #end if | 41 #end if |
42 #end if | 42 #end if |
43 | |
44 ## This is needed for Pulsar to transfer the file | |
45 cat '$__tool_directory__/get_deseq_dataset.R' > /dev/null && | |
43 | 46 |
44 #import json | 47 #import json |
45 #import os | 48 #import os |
46 Rscript '${__tool_directory__}/deseq2.R' | 49 Rscript '${__tool_directory__}/deseq2.R' |
47 --cores \${GALAXY_SLOTS:-1} | 50 --cores \${GALAXY_SLOTS:-1} |