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comparison deseq2.R @ 9:6f91b8ce6e07 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 31371b7f8c564c4b4edc8914e83492ee7f04ea31
author iuc
date Tue, 11 Apr 2017 09:46:37 -0400
parents 4939397c4706
children 25204a860b79
comparison
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8:57e2f9454d9e 9:6f91b8ce6e07
5 # 5 #
6 # one of these arguments is required: 6 # one of these arguments is required:
7 # 7 #
8 # 'factors' a JSON list object from Galaxy 8 # 'factors' a JSON list object from Galaxy
9 # 9 #
10 # 'sample_table' is a sample table as described in ?DESeqDataSetFromHTSeq 10 # 'sample_table' is a sample table as described in ?DESeqDataSetFromHTSeqCount
11 # with columns: sample name, filename, then factors (variables) 11 # with columns: sample name, filename, then factors (variables)
12 # 12 #
13 # the output file has columns: 13 # the output file has columns:
14 # 14 #
15 # baseMean (mean normalized count) 15 # baseMean (mean normalized count)