Mercurial > repos > iuc > deseq2
diff get_deseq_dataset.R @ 30:8fe98f7094de draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 6868b66f73ddbe947986d1a20b546873cbd515a9
author | iuc |
---|---|
date | Fri, 26 Aug 2022 11:16:15 +0000 |
parents | de44f8eff84a |
children |
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--- a/get_deseq_dataset.R Mon Nov 29 18:16:48 2021 +0000 +++ b/get_deseq_dataset.R Fri Aug 26 11:16:15 2022 +0000 @@ -14,7 +14,7 @@ } } - if (!use_txi & has_header) { + if (!use_txi && has_header) { countfiles <- lapply(as.character(sample_table$filename), read.delim, row.names = 1) tbl <- do.call("cbind", countfiles) colnames(tbl) <- rownames(sample_table) # take sample ids from header @@ -35,7 +35,7 @@ colData = subset(sample_table, select = -filename), design = design_formula ) - } else if (!use_txi & !has_header) { + } else if (!use_txi && !has_header) { # construct the object from HTSeq files dds <- DESeqDataSetFromHTSeqCount(