# HG changeset patch
# User iuc
# Date 1443431249 14400
# Node ID d983d19fbbabafa1efd15d7a8b6b9062ec97504f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 625a9632df44b1b623941e35c22f71f0e55ee371
diff -r 000000000000 -r d983d19fbbab deseq2.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq2.xml Mon Sep 28 05:07:29 2015 -0400
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+ Determines differentially expressed features from count tables
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+ deseq2
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+ /dev/null | grep -v -i "WARNING: ")
+ ]]>
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+ many_contrasts is False
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+ many_contrasts is True
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+ pdf == True
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+ 10.1186/s13059-014-0550-8
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461176_untreat_single.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461176_untreat_single.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461177_untreat_paired.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461177_untreat_paired.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461178_untreat_paired.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461178_untreat_paired.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461179_treat_single.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461179_treat_single.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461180_treat_paired.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461180_treat_paired.counts Mon Sep 28 05:07:29 2015 -0400
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461181_treat_paired.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461181_treat_paired.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/GSM461182_untreat_single.counts
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GSM461182_untreat_single.counts Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,4004 @@
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diff -r 000000000000 -r d983d19fbbab test-data/deseq2_out.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/deseq2_out.tab Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,3999 @@
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diff -r 000000000000 -r d983d19fbbab test-data/deseq2_out_filtered.tab
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/deseq2_out_filtered.tab Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,3999 @@
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diff -r 000000000000 -r d983d19fbbab tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Mon Sep 28 05:07:29 2015 -0400
@@ -0,0 +1,6 @@
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