Mercurial > repos > iuc > dexseq
diff test-data/flattened.gtf @ 0:4ca0e679f21e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 876fc32b23d3b9c378ddbfbbba27d37d22576c85
| author | iuc |
|---|---|
| date | Thu, 08 Oct 2015 16:52:01 -0400 |
| parents | |
| children | 6e8b61c54ff3 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/flattened.gtf Thu Oct 08 16:52:01 2015 -0400 @@ -0,0 +1,257 @@ +4 dexseq_prepare_annotation.py aggregate_gene 68336 77667 . - . gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 68336 71088 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "001"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 71142 71239 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "002"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 71240 71306 . - . transcripts "FBtr0306168+FBtr0089178"; exonic_part_number "003"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 71371 71883 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "004"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 71940 72580 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "005"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 72643 73010 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "006"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 76457 76916 . - . transcripts "FBtr0308074+FBtr0089178"; exonic_part_number "007"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 76917 76957 . - . transcripts "FBtr0308074+FBtr0089178+FBtr0306168"; exonic_part_number "008"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py exonic_part 76958 77667 . - . transcripts "FBtr0306168"; exonic_part_number "009"; gene_id "FBgn0004859" +4 dexseq_prepare_annotation.py aggregate_gene 137015 150380 . - . gene_id "FBgn0011747" +4 dexseq_prepare_annotation.py exonic_part 137015 137256 . - . transcripts "FBtr0089172+FBtr0089173+FBtr0089171"; exonic_part_number "001"; gene_id "FBgn0011747" +4 dexseq_prepare_annotation.py exonic_part 137312 139127 . - . transcripts "FBtr0089172+FBtr0089173+FBtr0089171"; exonic_part_number "002"; gene_id "FBgn0011747" +4 dexseq_prepare_annotation.py exonic_part 139181 139405 . - . transcripts "FBtr0089172+FBtr0089173+FBtr0089171"; 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gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 536208 536257 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "003"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 542099 543730 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "004"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 544957 545138 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "005"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 545530 547146 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "006"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 550319 551719 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "007"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 551782 551784 . + . transcripts "FBtr0332913+FBtr0089070"; exonic_part_number "008"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 551785 552005 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "009"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 552062 552409 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "010"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 553409 553411 . + . transcripts "FBtr0332913+FBtr0089070"; exonic_part_number "011"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 553412 553552 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "012"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 553609 556506 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "013"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 557592 557701 . + . transcripts "FBtr0332913"; exonic_part_number "014"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 557801 558386 . + . transcripts "FBtr0332913+FBtr0089070+FBtr0307167"; exonic_part_number "015"; gene_id "FBgn0004607" +4 dexseq_prepare_annotation.py exonic_part 558387 558999 . + . transcripts "FBtr0332913"; 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exonic_part_number "005"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 733119 733299 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "006"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 734484 735138 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "007"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 737753 737926 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "008"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 738280 738555 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "009"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 739900 740254 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "010"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py exonic_part 740948 741787 . + . transcripts "FBtr0089235+FBtr0100395+FBtr0100396+FBtr0089236"; exonic_part_number "011"; gene_id "FBgn0005558" +4 dexseq_prepare_annotation.py aggregate_gene 745030 796707 . + . gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 745030 745117 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "001"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 746295 746655 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "002"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 747288 747309 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "003"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 747558 747588 . + . transcripts "FBtr0301341"; exonic_part_number "004"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 748087 748249 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "005"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 748730 748871 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; 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gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 795003 795305 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "046"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py exonic_part 795541 796707 . + . transcripts "FBtr0301340+FBtr0301341+FBtr0089793"; exonic_part_number "047"; gene_id "FBgn0005666" +4 dexseq_prepare_annotation.py aggregate_gene 1052110 1055183 . + . gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1052110 1052368 . + . transcripts "FBtr0333672"; exonic_part_number "001"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1052429 1052489 . + . transcripts "FBtr0333672"; exonic_part_number "002"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1052490 1052579 . + . transcripts "FBtr0089187+FBtr0089186+FBtr0333672"; exonic_part_number "003"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1053515 1053532 . + . transcripts "FBtr0333672"; exonic_part_number "004"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1053533 1053844 . + . transcripts "FBtr0089187+FBtr0089186+FBtr0333672"; exonic_part_number "005"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1053845 1053897 . + . transcripts "FBtr0089187"; exonic_part_number "006"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py exonic_part 1053898 1055183 . + . transcripts "FBtr0089187+FBtr0089186+FBtr0333672"; exonic_part_number "007"; gene_id "FBgn0010217" +4 dexseq_prepare_annotation.py aggregate_gene 1077991 1084936 . - . gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1077991 1078198 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "001"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078259 1078263 . - . transcripts "FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "002"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078264 1078379 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "003"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078433 1078665 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "004"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078666 1078777 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "005"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078778 1078781 . - . transcripts "FBtr0309885+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "006"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1078836 1079130 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "007"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1079727 1079914 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; exonic_part_number "008"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1079915 1079958 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309882+FBtr0089216+FBtr0089214+FBtr0089212+FBtr0089211"; exonic_part_number "009"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1079959 1079977 . - . transcripts "FBtr0309885+FBtr0309882+FBtr0089216+FBtr0089214+FBtr0089212+FBtr0089211"; exonic_part_number "010"; gene_id "FBgn0011642" +4 dexseq_prepare_annotation.py exonic_part 1080045 1080462 . - . transcripts "FBtr0309885+FBtr0309884+FBtr0309883+FBtr0309882+FBtr0089216+FBtr0089215+FBtr0089214+FBtr0089213+FBtr0089212+FBtr0089211+FBtr0089210"; 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