diff dexseq_count.xml @ 10:df929f257179 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit 2ea27822b171dbf519509dc1da150c8ccee2a140

--- a/dexseq_count.xml	Tue May 03 20:23:18 2022 +0000
+++ b/dexseq_count.xml	Tue Apr 04 08:25:51 2023 +0000
@@ -1,13 +1,10 @@
-<tool id="dexseq_count" name="DEXSeq-Count" version="@TOOL_VERSION@.1" profile="@PROFILE@">
+<tool id="dexseq_count" name="DEXSeq-Count" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Prepare and count exon abundancies from RNA-seq data</description>
-    <xrefs>
-        <xref type="bio.tools">dexseq</xref>
-    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements">
-    </expand>
+    <expand macro="xrefs"/>
+    <expand macro="requirements"/>
     <stdio>
         <!-- Anything other than zero is an error -->
         <exit_code range="1:" />
@@ -32,6 +29,8 @@
         $mode.flattened_gtf_in
         '$mode.bamfile'
         '$counts_file'
+    &&
+    sed -i 's/\"//g' '$counts_file'
 #end if
     ]]></command>
     <inputs>