diff dexseq_count.xml @ 3:f89c9b25feb4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit e785d126b23609208b055fb8902f3b9368e9b839

--- a/dexseq_count.xml	Sun Jan 28 04:04:39 2018 -0500
+++ b/dexseq_count.xml	Sat Jul 28 03:44:02 2018 -0400
@@ -78,6 +78,13 @@
             <param name="aggregate" value="True"/>
             <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/>
         </test>
+        <!-- Ensure count mode works -->
+        <test>
+            <param name="mode_select" value="count" />
+            <param name="bamfile" ftype="bam" value="in.bam" />
+            <param name="flattened_gtf_in" ftype="gff" value="flattened.gtf"/>
+            <output name="counts_file" ftype="tabular" file="out_count.tab"/>
+        </test>
     </tests>
 
     <help><![CDATA[