comparison dimet_differential_analysis.xml @ 5:78f776370dfb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit b74312f0a6cb28e204f8633453e493fa0b2c89d8

4:f8247afcd994

**Running the analysis**

You can precise how you want your analysis to be executed, with the parameters:

- **conditions**: the conditions present in your data, specifying in first place your CONTROL condition (this ordering is crucial to make the comparisons in a coherent sense).

- **comparisons** : the pairs of [condition, timepoint] groups to compare

- **datatypes** : the measures type(s) that you want to run

- **statistical_test** : choose, by type of measure, the specific statistical test to be applied.

 Kruskal-Wallis, Mann-Whitney, Wilcoxon’s signed rank test, Wilcoxon’s rank sum test
 t-test, and permutation test are currently offered (we use the trusted functions from scipy library https://docs.scipy.org/doc/scipy/reference/stats.html).

5:78f776370dfb

**Running the analysis**

You can precise how you want your analysis to be executed, with the parameters:

- **conditions**: the conditions present in your data, to perform the pairwise comparison.

- **comparisons** : the pairs of [condition, timepoint] groups to compare

- **datatypes** : the measures type(s) that you want to run (see above in Input data files section)

- **statistical_test** : choose, by type of measure, the specific statistical test to be applied.

 Kruskal-Wallis, Mann-Whitney, Wilcoxon’s signed rank test, Wilcoxon’s rank sum test
 t-test, and permutation test are currently offered (we use the trusted functions from scipy library https://docs.scipy.org/doc/scipy/reference/stats.html).