# HG changeset patch # User iuc # Date 1722966047 0 # Node ID fff032d6115a578400ca9dbc662a3f09b3adefc9 # Parent 6a63c1d832db1b230c96ec6c4f5045a3a14ceb29 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 diff -r 6a63c1d832db -r fff032d6115a dimet_differential_analysis.xml --- a/dimet_differential_analysis.xml Fri Jun 21 18:50:24 2024 +0000 +++ b/dimet_differential_analysis.xml Tue Aug 06 17:40:47 2024 +0000 @@ -266,11 +266,11 @@ You can precise how you want your analysis to be executed, with the parameters: -- **conditions**: the conditions present in your data, to perform the pairwise comparison. +- **datatypes** : the measures type(s) that you want to run (see above in Input data files section) -- **comparisons** : the pairs of [condition, timepoint] groups to compare +- **conditions**: the two 'Conditions' boxes must be filled in a coherent order, keeping in mind that the last specified condition is the reference or control. -- **datatypes** : the measures type(s) that you want to run (see above in Input data files section) +- **timepoint** : the time point at which the two conditions will be compared. - **statistical_test** : choose, by type of measure, the specific statistical test to be applied. diff -r 6a63c1d832db -r fff032d6115a macros.xml --- a/macros.xml Fri Jun 21 18:50:24 2024 +0000 +++ b/macros.xml Tue Aug 06 17:40:47 2024 +0000 @@ -1,6 +1,6 @@ 0.2.4 - 3 + 4 dimet @@ -49,6 +49,7 @@ + 10.1093/bioinformatics/btae282 @software{Galvis_Rodriguez_DIMet, author = {Galvis Rodriguez, Johanna and Guyon, Joris and Dartigues, Benjamin and Specque, Florian and Daubon, Thomas and Karkar, Slim and Nikolski, Macha}, @@ -56,7 +57,6 @@ title = {{DIMet}}, url = {https://github.com/cbib/DIMet} } - @@ -95,58 +95,23 @@ - + - - - - - - - - - - - - - - - - - + - - - - - - - - - - - - - - - - - + - diff -r 6a63c1d832db -r fff032d6115a test-data/AMINOACIDS-Control-T0-L-Cycloserine-T0--DEG_comparison1-abundances-cell.svg --- a/test-data/AMINOACIDS-Control-T0-L-Cycloserine-T0--DEG_comparison1-abundances-cell.svg Fri Jun 21 18:50:24 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1542 +0,0 @@ - - - diff -r 6a63c1d832db -r fff032d6115a test-data/AMINOACIDS-L-Cycloserine-T0-Control-T0--DEG_comparison1-abundances-cell.svg --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AMINOACIDS-L-Cycloserine-T0-Control-T0--DEG_comparison1-abundances-cell.svg Tue Aug 06 17:40:47 2024 +0000 @@ -0,0 +1,1295 @@ + + + diff -r 6a63c1d832db -r fff032d6115a test-data/CENTRAL_CARBON_METABOLISM-Control-T0-L-Cycloserine-T0--DEG_comparison1-abundances-cell.svg --- a/test-data/CENTRAL_CARBON_METABOLISM-Control-T0-L-Cycloserine-T0--DEG_comparison1-abundances-cell.svg Fri Jun 21 18:50:24 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1654 +0,0 @@ - - - diff -r 6a63c1d832db -r fff032d6115a test-data/CENTRAL_CARBON_METABOLISM-L-Cycloserine-T0-Control-T0--DEG_comparison1-abundances-cell.svg --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/CENTRAL_CARBON_METABOLISM-L-Cycloserine-T0-Control-T0--DEG_comparison1-abundances-cell.svg Tue Aug 06 17:40:47 2024 +0000 @@ -0,0 +1,1420 @@ + + +