Mercurial > repos > iuc > dimet_enrichment_plot
changeset 6:be19aa1df5af draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
| author | iuc |
|---|---|
| date | Fri, 21 Jun 2024 18:51:03 +0000 |
| parents | 5c12e5d57e53 |
| children | |
| files | dimet_enrichment_plot.xml macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 8 deletions(-) [+] |
line wrap: on
line diff
--- a/dimet_enrichment_plot.xml Tue May 21 13:45:07 2024 +0000 +++ b/dimet_enrichment_plot.xml Fri Jun 21 18:51:03 2024 +0000 @@ -15,8 +15,7 @@ @INIT_TIMEPOINTS@ @INIT_ENRICHMENT_METABOLITES@ HYDRA_FULL_ERROR=1 python -m dimet - -cp '$__new_file_path__/config' - '++hydra.run.dir=mean_enrichment_line_plot' + '++hydra.run.dir=.' '++figure_path=figures' '++table_path=tables' '++analysis={ @@ -242,4 +241,4 @@ ]]> </help> <expand macro="citations"/> -</tool> \ No newline at end of file +</tool>
--- a/macros.xml Tue May 21 13:45:07 2024 +0000 +++ b/macros.xml Fri Jun 21 18:51:03 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">0.2.4</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">dimet</requirement> @@ -598,16 +598,15 @@ ]]></token> <token name="@INIT_CONFIG@"><![CDATA[ - mkdir -p '$__new_file_path__/config' && - touch '$__new_file_path__/config/config.yaml' && + mkdir -p 'config' && + touch 'config/config.yaml' && ]]></token> <token name="@REMOVE_CONFIG@"><![CDATA[ - && rm -r '$__new_file_path__/config' + && rm -r 'config' ]]></token> <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[ mkdir -p data && - #if $metadata_path: ln -s '$metadata_path' data/metadata.csv && #end if