Mercurial > repos > iuc > dimet_metabologram
changeset 6:c7ff01bd331b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
| author | iuc |
|---|---|
| date | Fri, 21 Jun 2024 18:49:45 +0000 |
| parents | 82fbf955bb0f |
| children | 06f8d9ba09cd |
| files | dimet_metabologram.xml macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 8 deletions(-) [+] |
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--- a/dimet_metabologram.xml Tue May 21 13:42:49 2024 +0000 +++ b/dimet_metabologram.xml Fri Jun 21 18:49:45 2024 +0000 @@ -16,10 +16,9 @@ @INIT_PATHWAYS@ @INIT_STAT_TEST@ HYDRA_FULL_ERROR=1 python -m dimet - -cp '$__new_file_path__/config' + '++hydra.run.dir=.' '++figure_path=figures' '++table_path=tables' - '++hydra.run.dir=metabologram' '++analysis={ dataset:{ _target_: dimet.data.DataIntegrationConfig, @@ -344,4 +343,4 @@ ]]> </help> <expand macro="citations" /> -</tool> \ No newline at end of file +</tool>
--- a/macros.xml Tue May 21 13:42:49 2024 +0000 +++ b/macros.xml Fri Jun 21 18:49:45 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">0.2.4</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">dimet</requirement> @@ -598,16 +598,15 @@ ]]></token> <token name="@INIT_CONFIG@"><![CDATA[ - mkdir -p '$__new_file_path__/config' && - touch '$__new_file_path__/config/config.yaml' && + mkdir -p 'config' && + touch 'config/config.yaml' && ]]></token> <token name="@REMOVE_CONFIG@"><![CDATA[ - && rm -r '$__new_file_path__/config' + && rm -r 'config' ]]></token> <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[ mkdir -p data && - #if $metadata_path: ln -s '$metadata_path' data/metadata.csv && #end if