Mercurial > repos > iuc > dimet_pca_plot
comparison dimet_pca_plot.xml @ 6:ff64373cebc2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
author | iuc |
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date | Fri, 21 Jun 2024 18:53:40 +0000 |
parents | 23f87b8cc62b |
children |
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5:9c7f9f79a93a | 6:ff64373cebc2 |
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12 @INIT_CONFIG@ | 12 @INIT_CONFIG@ |
13 @INIT_PCA@ | 13 @INIT_PCA@ |
14 @INIT_IMPUTE_VALUES@ | 14 @INIT_IMPUTE_VALUES@ |
15 @INIT_CONDITIONS@ | 15 @INIT_CONDITIONS@ |
16 HYDRA_FULL_ERROR=1 python -m dimet | 16 HYDRA_FULL_ERROR=1 python -m dimet |
17 -cp '$__new_file_path__/config' | 17 '++hydra.run.dir=.' |
18 '++hydra.run.dir=pca-plot' | |
19 '++figure_path=figures' | 18 '++figure_path=figures' |
20 '++table_path=tables' | 19 '++table_path=tables' |
21 '++analysis={ | 20 '++analysis={ |
22 dataset:{ | 21 dataset:{ |
23 _target_:dimet.data.DatasetConfig, | 22 _target_:dimet.data.DatasetConfig, |
48 #end if | 47 #end if |
49 #if $me_or_frac_contrib_file: | 48 #if $me_or_frac_contrib_file: |
50 '++analysis.dataset.mean_enrichment=me_or_frac_contrib' | 49 '++analysis.dataset.mean_enrichment=me_or_frac_contrib' |
51 #end if | 50 #end if |
52 @REMOVE_CONFIG@ | 51 @REMOVE_CONFIG@ |
53 | |
54 ]]></command> | 52 ]]></command> |
55 <inputs> | 53 <inputs> |
56 <expand macro="input_parameters_pca"/> | 54 <expand macro="input_parameters_pca"/> |
57 <expand macro="conditions"/> | 55 <expand macro="conditions"/> |
58 <section name="output_options" title="Output options"> | 56 <section name="output_options" title="Output options"> |