Mercurial > repos > iuc > dimet_pca_plot

comparison dimet_pca_plot.xml @ 6:ff64373cebc2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5
author iuc
date Fri, 21 Jun 2024 18:53:40 +0000
parents 23f87b8cc62b
children
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5:9c7f9f79a93a 6:ff64373cebc2
12 @INIT_CONFIG@ 12 @INIT_CONFIG@
13 @INIT_PCA@ 13 @INIT_PCA@
14 @INIT_IMPUTE_VALUES@ 14 @INIT_IMPUTE_VALUES@
15 @INIT_CONDITIONS@ 15 @INIT_CONDITIONS@
16 HYDRA_FULL_ERROR=1 python -m dimet 16 HYDRA_FULL_ERROR=1 python -m dimet
17 -cp '$__new_file_path__/config' 17 '++hydra.run.dir=.'
18 '++hydra.run.dir=pca-plot'
19 '++figure_path=figures' 18 '++figure_path=figures'
20 '++table_path=tables' 19 '++table_path=tables'
21 '++analysis={ 20 '++analysis={
22 dataset:{ 21 dataset:{
23 _target_:dimet.data.DatasetConfig, 22 _target_:dimet.data.DatasetConfig,
48 #end if 47 #end if
49 #if $me_or_frac_contrib_file: 48 #if $me_or_frac_contrib_file:
50 '++analysis.dataset.mean_enrichment=me_or_frac_contrib' 49 '++analysis.dataset.mean_enrichment=me_or_frac_contrib'
51 #end if 50 #end if
52 @REMOVE_CONFIG@ 51 @REMOVE_CONFIG@
53
54 ]]></command> 52 ]]></command>
55 <inputs> 53 <inputs>
56 <expand macro="input_parameters_pca"/> 54 <expand macro="input_parameters_pca"/>
57 <expand macro="conditions"/> 55 <expand macro="conditions"/>
58 <section name="output_options" title="Output options"> 56 <section name="output_options" title="Output options">