diff dram_distill.xml @ 1:9471e3d97837 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit e0934fc66bfd742731505cacd18cbf53b26d4f2a

--- a/dram_distill.xml	Sat Dec 10 21:15:05 2022 +0000
+++ b/dram_distill.xml	Tue Jul 11 23:46:25 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="dram_distill" name="DRAM distill" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="dram_distill" name="DRAM distill" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>metagenome-assembled-genomes (MAGs)</description>
     <macros>
         <import>macros.xml</import>
@@ -21,10 +21,10 @@
 #end if
 $distillate_gene_names
 --genomes_per_product $genomes_per_product
-&& test -f 'output_dir/genome_stats.tsv' && mv 'output_dir/genome_stats.tsv' '$output_genome_stats' || echo 'No genome_stats.tsv output produced'
-&& test -f 'output_dir/metabolism_summary.xlsx' && mv 'output_dir/metabolism_summary.xlsx' '$output_metabolism_summary' || echo 'No metabolism_summary.xlsx output produced'
-&& test -f 'output_dir/product.html' && mv 'output_dir/product.html' '$output_product_html' || echo 'No product.html output produced'
-&& test -f 'output_dir/product.tsv' && mv 'output_dir/product.tsv' '$output_product_tsv' || echo 'No product.tsv output produced'
+&& (test -f 'output_dir/genome_stats.tsv' && mv 'output_dir/genome_stats.tsv' '$output_genome_stats' || echo 'No genome_stats.tsv output produced')
+&& (test -f 'output_dir/metabolism_summary.xlsx' && mv 'output_dir/metabolism_summary.xlsx' '$output_metabolism_summary' || echo 'No metabolism_summary.xlsx output produced')
+&& (test -f 'output_dir/product.html' && mv 'output_dir/product.html' '$output_product_html' || echo 'No product.html output produced')
+&& (test -f 'output_dir/product.tsv' && mv 'output_dir/product.tsv' '$output_product_tsv' || echo 'No product.tsv output produced')
     ]]></command>
     <inputs>
         <expand macro="input_file_param"/>