view test-data/annotate_custom.hmm @ 2:866be6c60810 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit a5e28ac40a63a269100ddec5629aee5256ce00ef
author iuc
date Fri, 09 Feb 2024 21:36:08 +0000
parents 2675f8d7b2a5
children
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HMMER3/b [3.0 | March 2010]
NAME  CBM10
LENG  28
ALPH  amino
RF    no
CS    no
MAP   yes
DATE  Thu Apr 21 15:04:19 2011
NSEQ  84
EFFN  8.697876
CKSUM 1939305542
STATS LOCAL MSV       -7.3395  0.71998
STATS LOCAL VITERBI   -7.4498  0.71998
STATS LOCAL FORWARD   -3.9737  0.71998
HMM          A        C        D        E        F        G        H        I        K        L        M        N        P        Q        R        S        T        V        W        Y   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   3.06033  2.42663  2.85747  2.77283  4.58046  2.24214  4.56942  3.29197  3.49682  3.34028  4.33944  2.39813  3.09771  2.95262  3.60586  2.44839  2.84569  3.24117  2.72301  3.28669
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.59367  5.66823  0.81137  0.61958  0.77255  0.00000        *
      1   2.74340  3.47729  3.44643  2.64352  4.17985  3.79353  4.02282  3.57300  2.87097  3.22136  2.03109  3.38316  4.18747  1.79120  3.30841  2.03216  2.98385  3.28775  5.51287  4.21451      1 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00925  5.08381  5.80616  0.61958  0.77255  0.72961  0.65797
      2   3.21366  0.33490  5.23672  5.17809  5.69922  3.92522  5.89105  5.22956  5.14397  4.94899  5.73770  3.11988  4.78715  5.32569  5.20447  2.46009  3.79312  4.43668  7.07761  5.95722      2 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00690  5.37599  6.09834  0.61958  0.77255  0.73167  0.65606
      3   3.46517  6.03524  2.03286  2.67508  5.36194  2.25828  4.36563  4.86858  2.77875  4.33291  5.09631  1.07839  4.52524  2.62719  3.73072  2.75509  3.71412  4.41890  6.46315  5.00841      3 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.04091  5.49877  3.32435  0.61958  0.77255  0.52775  0.89143
      4   2.51597  5.24536  3.21395  3.79383  4.81190  3.30725  4.89534  4.21717  3.89295  3.90352  4.76570  4.13904  4.73005  4.17210  4.26805  3.51068  1.58681  3.86875  0.87084  4.95297      4 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00570  5.56595  6.28829  0.61958  0.77255  0.68571  0.70065
      5   1.88947  5.00491  4.00042  3.04471  4.13869  4.17114  3.84034  3.52228  3.40249  3.22374  4.10809  3.86994  4.55537  3.71667  3.77844  2.67165  2.19530  3.28758  3.58338  1.27239      5 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00552  5.59725  6.31960  0.61958  0.77255  0.60266  0.79264
      6   3.27926  5.74099  2.79040  2.94678  5.08062  1.27592  4.24831  3.41153  3.01359  4.05572  4.81107  3.21498  2.15563  2.32440  3.50951  2.31938  3.51838  4.13470  6.20511  4.79969      6 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00538  5.62391  6.34625  0.61958  0.77255  0.69965  0.68669
      7   2.98451  5.68149  2.03356  2.71108  5.01893  3.09684  4.15179  4.49988  2.89056  3.98355  4.72438  1.82442  4.35665  2.68802  3.38251  2.74393  1.71463  4.06807  3.52699  3.90983      7 - -
          2.68578  4.42235  2.77530  2.73110  3.46364  2.40479  3.72505  3.29364  2.67751  2.69365  4.24700  2.90357  2.73727  3.18156  2.89811  2.37897  2.77530  2.98528  4.58487  3.61513
          0.14902  1.99000  6.34625  0.10689  2.28891  0.69965  0.68669
      8   3.19090  5.50968  3.36180  2.55343  4.38053  1.63858  4.19450  3.04193  2.96578  2.23058  4.05970  3.07880  3.01639  2.64825  3.07570  2.49306  2.80765  3.53190  5.98768  4.62450      9 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00538  5.62391  6.34625  0.61958  0.77255  0.69965  0.68669
      9   3.30193  4.76401  4.80184  4.21616  3.05893  4.40631  3.99626  3.08634  4.08448  2.95513  3.88012  3.73814  4.77402  4.29596  2.52547  3.69570  2.58705  2.52689  3.32984  0.97478     10 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00538  5.62391  6.34625  0.61958  0.77255  0.69965  0.68669
     10   2.32473  5.64538  5.53793  5.57489  6.38350  4.40420  6.41981  5.93743  5.72131  5.61364  6.43501  5.22374  0.20710  5.86906  5.75943  3.97124  4.34771  5.06195  7.59408  6.65445     11 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00538  5.62391  6.34625  0.61958  0.77255  0.37205  1.16899
     11   3.58384  4.93148  5.56416  4.95726  3.91906  4.79211  5.13458  1.77893  4.75282  1.13355  3.06266  4.95749  5.12252  4.86103  4.75631  4.11300  3.21564  2.07697  5.57505  1.83829     12 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00514  5.66823  6.39058  0.61958  0.77255  0.48576  0.95510
     12   5.71966  0.02531  6.84380  6.91525  7.13022  5.70129  7.38113  7.10787  6.98034  6.56339  7.77682  6.87800  6.41517  7.25240  6.78559  5.99442  6.25794  6.61467  7.79024  7.35403     13 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00504  5.68941  6.41175  0.61958  0.77255  0.48576  0.95510
     13   2.41147  3.20655  3.53784  2.40111  4.88318  4.02495  4.21901  3.78028  2.98003  3.87483  4.64917  2.70267  4.41694  2.30765  2.78055  1.76169  2.65304  2.19195  6.06083  4.68604     14 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00504  5.68941  6.41175  0.61958  0.77255  0.48576  0.95510
     14   2.74185  5.72539  2.63675  2.93457  3.96591  3.69396  4.20563  4.54474  2.94831  4.03155  4.77475  1.41344  4.40698  2.54763  3.44063  1.76732  2.34335  4.11464  6.16929  4.76318     15 - -
          2.68523  4.42403  2.77182  2.73232  3.46532  2.40585  3.72673  3.29532  2.67804  2.69505  4.24319  2.90431  2.73487  3.18324  2.89979  2.37553  2.77698  2.98553  4.58655  3.61389
          0.58512  0.94092  2.94329  1.48029  0.25821  0.48576  0.95510
     15   3.47982  6.33375  0.90693  3.16099  5.69480  4.26212  4.68181  5.20722  3.57120  4.67837  5.46228  3.14309  4.80418  1.88749  4.12162  3.20868  1.75159  4.75211  6.81751  5.34778     22 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00482  5.73317  6.45551  0.61958  0.77255  0.35526  1.20728
     16   3.03343  5.90978  2.34772  2.94997  5.25600  1.51506  4.35220  4.74411  3.10705  4.21997  4.96183  2.22759  3.74056  3.22198  3.60642  1.81905  2.25397  4.30352  6.35034  4.93322     23 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     17   3.51207  6.01185  1.26404  3.11779  5.37730  2.19861  4.47009  4.86743  3.25491  4.34850  5.10068  2.39503  4.64112  3.20246  3.76274  1.57873  3.14157  3.62631  6.48465  5.06120     24 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     18   3.89420  6.14443  3.13584  3.62492  6.03391  0.48533  5.17450  5.54431  4.15735  5.07152  5.87515  4.13239  5.06029  2.80445  4.68604  2.69884  2.46312  4.97999  7.22793  5.81338     25 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     19   6.30912  7.33417  6.81039  6.64222  5.43964  6.05006  6.52959  6.93630  5.86025  6.06276  7.37371  6.70200  6.63995  6.57460  3.64516  6.46847  6.65232  6.73483  0.06027  5.38285     26 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     20   6.00082  7.26187  6.77093  6.85562  7.55194  0.01782  7.54852  7.76136  7.11483  7.00587  8.18240  6.97731  6.59859  7.35744  6.96444  6.25830  6.53175  7.11849  8.01758  7.77288     27 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     21   2.85558  4.93320  5.01904  4.44670  3.96129  4.55274  4.87439  3.39985  4.30306  3.14653  4.07295  3.28033  4.94659  4.51322  4.45054  3.85882  2.48037  2.52459  0.81497  2.55247     28 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     22   4.41613  7.05734  3.41290  0.33211  6.45410  4.55267  5.18133  6.03259  4.21333  5.45749  6.34879  4.02373  5.23058  2.45539  4.78815  2.76925  4.73557  5.53995  7.57078  6.01524     29 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     23   4.65182  7.42009  2.82915  3.46315  6.72740  4.60645  5.35687  6.43956  4.62773  5.83877  6.82459  0.20801  5.34677  3.75994  5.38642  4.44973  5.00947  5.90632  7.92820  6.25143     30 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00434  5.83749  6.55983  0.61958  0.77255  0.48576  0.95510
     24   3.03871  6.18494  3.21297  2.61231  5.52195  2.08712  4.55336  5.02325  3.36798  4.49202  5.24999  1.02698  4.71928  2.57491  3.89135  1.97384  3.88199  4.57575  6.62318  5.17899     31 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00504  5.68941  6.41175  0.61958  0.77255  0.48576  0.95510
     25   1.99175  5.71724  3.48758  2.45228  5.05473  4.00588  4.19152  4.53331  2.79074  4.01804  4.28019  3.47693  4.39887  1.29371  2.11828  2.43019  3.30733  4.10393  6.15338  3.96473     32 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00504  5.68941  6.41175  0.61958  0.77255  0.48576  0.95510
     26   3.43388  5.57346  3.69941  2.95794  4.91426  4.17833  4.53372  3.14649  3.35913  3.94178  4.77104  3.49497  4.65004  3.34410  3.80156  0.56810  2.88463  3.99116  6.19270  4.86921     33 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.00504  5.68941  6.41175  0.61958  0.77255  0.48576  0.95510
     27   4.26126  0.16067  6.38751  6.27473  5.43175  4.92822  6.57062  4.62334  5.97406  4.19855  3.09118  5.80642  5.70066  6.20961  5.93464  4.54901  4.79228  4.45835  7.10686  5.93986     34 - -
          2.68618  4.42225  2.77519  2.73123  3.46354  2.40513  3.72494  3.29354  2.67741  2.69355  4.24690  2.90347  2.73739  3.18146  2.89801  2.37887  2.77519  2.98518  4.58477  3.61503
          0.05109  5.66823  3.07142  0.61958  0.77255  0.48576  0.95510
     28   4.30379  3.20827  6.48590  6.05149  4.97840  6.03933  6.92759  0.73764  6.03790  2.64441  4.67131  6.21290  6.22644  6.33190  6.22989  5.50520  4.56636  1.06340  7.18287  5.92811     35 - -
          2.68632  4.41952  2.77533  2.73137  3.46368  2.40527  3.72508  3.29292  2.67755  2.69369  4.24704  2.90360  2.73753  3.18160  2.89814  2.37901  2.77533  2.98380  4.58491  3.61517
          0.20465  1.68705        *  0.08250  2.53598  0.00000        *
//