# HG changeset patch
# User iuc
# Date 1689119215 0
# Node ID 96c0067106ecbb21fdaaf8db2385c644657f644a
# Parent  2675f8d7b2a5200cb6179aea7f61fa121e336c26
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit e0934fc66bfd742731505cacd18cbf53b26d4f2a

diff -r 2675f8d7b2a5 -r 96c0067106ec dram_merge_annotations.xml
--- a/dram_merge_annotations.xml	Sat Dec 10 21:14:28 2022 +0000
+++ b/dram_merge_annotations.xml	Tue Jul 11 23:46:55 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="dram_merge_annotations" name="DRAM merge multiple annotations" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="dram_merge_annotations" name="DRAM merge multiple annotations" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>into a single set</description>
     <macros>
         <import>macros.xml</import>
@@ -38,17 +38,17 @@
 DRAM.py merge_annotations
 --input_dirs 'input_dir*'
 --output_dir 'output_dir'
-&& test -f 'output_dir/genes.faa' && mv 'output_dir/genes.faa' '$output_genes_faa' || echo 'No genes.faa output produced'
-&& test -f 'output_dir/genes.fna' && mv 'output_dir/genes.fna' '$output_genes_fna' || echo 'No genes.fna output produced'
-&& test -f 'output_dir/genes.gff' && mv 'output_dir/genes.gff' '$output_genes_gff' || echo 'No genes.gff output produced'
-&& test -f 'output_dir/scaffolds.fna' && mv 'output_dir/scaffolds.fna' '$output_scaffolds_fna' || echo 'No scaffolds.fna output produced'
+&& (test -f 'output_dir/genes.faa' && mv 'output_dir/genes.faa' '$output_genes_faa' || echo 'No genes.faa output produced')
+&& (test -f 'output_dir/genes.fna' && mv 'output_dir/genes.fna' '$output_genes_fna' || echo 'No genes.fna output produced')
+&& (test -f 'output_dir/genes.gff' && mv 'output_dir/genes.gff' '$output_genes_gff' || echo 'No genes.gff output produced')
+&& (test -f 'output_dir/scaffolds.fna' && mv 'output_dir/scaffolds.fna' '$output_scaffolds_fna' || echo 'No scaffolds.fna output produced')
 #if $rrnas_collection:
-    && test -f 'output_dir/rrnas.tsv' && mv 'output_dir/rrnas.tsv' '$output_rrnas' || echo 'No rrnas.tsv output produced'
+    && (test -f 'output_dir/rrnas.tsv' && mv 'output_dir/rrnas.tsv' '$output_rrnas' || echo 'No rrnas.tsv output produced')
 #end if
 #if $trnas_collection:
-    && test -f 'output_dir/trnas.tsv' && mv 'output_dir/trnas.tsv' '$output_trnas' || echo 'No trnas.tsv output produced'
+    && (test -f 'output_dir/trnas.tsv' && mv 'output_dir/trnas.tsv' '$output_trnas' || echo 'No trnas.tsv output produced')
 #end if
-&& test -f 'output_dir/annotations.tsv' && mv 'output_dir/annotations.tsv' '$output_annotations' || echo 'No annotations.tsv output produced'
+&& (test -f 'output_dir/annotations.tsv' && mv 'output_dir/annotations.tsv' '$output_annotations' || echo 'No annotations.tsv output produced')
     ]]></command>
     <inputs>
         <param name="annotations_collection" type="data_collection" format="tabular" collection_type="list" label="Collection of annotation files"/>
diff -r 2675f8d7b2a5 -r 96c0067106ec macros.xml
--- a/macros.xml	Sat Dec 10 21:14:28 2022 +0000
+++ b/macros.xml	Tue Jul 11 23:46:55 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.5</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <!-- token name="@VERSION_SUFFIX@">0</token -->
     <token name="@PROFILE@">20.09</token>
     <xml name="requirements">
         <requirements>