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annotate test-data/annotated2.gff @ 2:669459119c20 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit a5e28ac40a63a269100ddec5629aee5256ce00ef
author iuc
date Fri, 09 Feb 2024 21:36:37 +0000
parents fc93558da540
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fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
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1 ##gff-version 3
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
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2 # Sequence Data: seqnum=1;seqlen=6089;seqhdr="scaffold_2027"
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
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3 # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="13|Catenulispora_acidiphila_DSM_44928|B|69.8|11|1";gc_cont=69.80;transl_table=11;uses_sd=1
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
4 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 3 500 81.5 + 0 ID=dataset_5328_scaffold_2027_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.735;conf=100.00;score=81.46;cscore=78.24;sscore=3.22;rscore=0.00;uscore=0.00;tscore=3.22;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
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5 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 550 1395 121.4 + 0 ID=dataset_5328_scaffold_2027_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.652;conf=100.00;score=122.16;cscore=123.21;sscore=-1.05;rscore=-4.48;uscore=-1.84;tscore=4.54;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
6 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 1362 1499 15.7 - 0 ID=dataset_5328_scaffold_2027_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572;conf=97.34;score=15.66;cscore=6.69;sscore=8.97;rscore=6.72;uscore=-0.20;tscore=2.45;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
7 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 1583 2284 128.2 - 0 ID=dataset_5328_scaffold_2027_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.674;conf=100.00;score=129.04;cscore=129.30;sscore=-0.26;rscore=-4.48;uscore=-1.16;tscore=4.54;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
8 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 2324 2995 109.1 - 0 ID=dataset_5328_scaffold_2027_5;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.711;conf=100.00;score=109.08;cscore=123.84;sscore=-14.76;rscore=-4.48;uscore=-0.76;tscore=-9.51;Dbxref="ko:K02338";
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
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9 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 2959 3363 42.5 - 0 ID=dataset_5328_scaffold_2027_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.699;conf=99.99;score=41.89;cscore=22.38;sscore=19.51;rscore=14.94;uscore=0.69;tscore=4.54;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
10 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 3435 3653 31.0 + 0 ID=dataset_5328_scaffold_2027_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.644;conf=99.92;score=31.04;cscore=15.02;sscore=16.03;rscore=10.75;uscore=1.35;tscore=3.92;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
11 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 3716 4126 90.1 + 0 ID=dataset_5328_scaffold_2027_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.710;conf=100.00;score=90.07;cscore=68.99;sscore=21.08;rscore=14.94;uscore=1.61;tscore=4.54;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
12 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 4128 4658 85.9 - 0 ID=dataset_5328_scaffold_2027_9;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.718;conf=100.00;score=87.09;cscore=80.36;sscore=6.73;rscore=10.10;uscore=-1.14;tscore=-3.38;
fc93558da540 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit df10ba86507266a6a6f83c9bbefb7191a41b46f5
iuc
parents:
diff changeset
13 dataset_5328_scaffold_2027 Prodigal_v2.6.3 CDS 4642 6087 162.5 - 0 ID=dataset_5328_scaffold_2027_10;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.717;conf=100.00;score=162.48;cscore=159.27;sscore=3.22;rscore=0.00;uscore=0.00;tscore=3.22;