# HG changeset patch
# User iuc
# Date 1689119229 0
# Node ID d1f8d32bbe3b1973d0dd1ff63e89306424358850
# Parent  fc93558da5408a5102dfaa61489663ac66f37580
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dram commit e0934fc66bfd742731505cacd18cbf53b26d4f2a

diff -r fc93558da540 -r d1f8d32bbe3b dram_neighborhoods.xml
--- a/dram_neighborhoods.xml	Sat Dec 10 21:14:08 2022 +0000
+++ b/dram_neighborhoods.xml	Tue Jul 11 23:47:09 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="dram_neighborhoods" name="DRAM find neighborhoods" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="dram_neighborhoods" name="DRAM find neighborhoods" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>around genes of interest</description>
     <macros>
         <import>macros.xml</import>
@@ -33,12 +33,12 @@
 #if $advanced.distance_bp > 0:
     --distance_bp $advanced.distance_bp
 #end if
-&& test -f 'output_dir/neighborhood_annotations.tsv' && mv 'output_dir/neighborhood_annotations.tsv' '$output_neighborhood_annotations' || echo 'No neighborhood_annotations.tsv output produced'
+&& (test -f 'output_dir/neighborhood_annotations.tsv' && mv 'output_dir/neighborhood_annotations.tsv' '$output_neighborhood_annotations' || echo 'No neighborhood_annotations.tsv output produced')
 #if $advanced.genes_loc:
-    && test -f 'output_dir/neighborhood_genes.dat' && mv 'output_dir/neighborhood_genes.dat' '$output_neighborhood_genes' || echo 'No neighborhood_genes.dat output produced'
+    && (test -f 'output_dir/neighborhood_genes.dat' && mv 'output_dir/neighborhood_genes.dat' '$output_neighborhood_genes' || echo 'No neighborhood_genes.dat output produced')
 #end if
 #if $advanced.scaffolds_loc:
-    && test -f 'output_dir/neighborhood_scaffolds.fna' && mv 'output_dir/neighborhood_scaffolds.fna' '$output_neighborhood_scaffolds' || echo 'No neighborhood_scaffolds.fna output produced'
+    && (test -f 'output_dir/neighborhood_scaffolds.fna' && mv 'output_dir/neighborhood_scaffolds.fna' '$output_neighborhood_scaffolds' || echo 'No neighborhood_scaffolds.fna output produced')
 #end if
     ]]></command>
     <inputs>
diff -r fc93558da540 -r d1f8d32bbe3b macros.xml
--- a/macros.xml	Sat Dec 10 21:14:08 2022 +0000
+++ b/macros.xml	Tue Jul 11 23:47:09 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.5</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <!-- token name="@VERSION_SUFFIX@">0</token -->
     <token name="@PROFILE@">20.09</token>
     <xml name="requirements">
         <requirements>