comparison macros.xml @ 11:f0334664a47b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/drep commit 802d7fe606623d900fd0d5de157e87166c0b7e84

10:30d4702cdba6

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">3.6.2</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">20.01</token>
    <xml name="biotools">
        <xrefs>
            <xref type="bio.tools">drep</xref>
        </xrefs>

            <option value="warnings" selected="true">Warnings</option>
            <option value="Primary_clustering_dendrogram" selected="true">Primary_clustering_dendrogram.pdf</option>
            <option value="Secondary_clustering_dendrograms">Secondary_clustering_dendrograms.pdf</option>
            <option value="Secondary_clustering_MDS">Secondary_clustering_MDS.pdf</option>
            <option value="Clustering_scatterplots" selected="true">Clustering_scatterplots.pdf</option>
            <yield/>
        </param>
    </xml>
    <xml name="select_drep_outputs">
        <expand macro="select_outputs">
            <option value="Cluster_scoring">Cluster_scoring.pdf</option>
            <option value="Winning_genomes">Winning_genomes.pdf</option>
            <option value="Widb">Widb.csv</option>
            <option value="Chdb">Chdb.tsv</option>
        </expand>
    </xml>
    <xml name="test_default_select_drep_outputs">
        <param name="select_outputs" value="log,warnings,Primary_clustering_dendrogram,Clustering_scatterplots,Cluster_scoring,Winning_genomes,Widb" />
    </xml>

        <data name="Secondary_clustering_MDS" format="pdf" label="${tool.name} on ${on_string}: Secondary_clustering_MDS.pdf" from_work_dir="outdir/figures/Secondary_clustering_MDS.pdf">
            <filter>'Secondary_clustering_MDS' in select_outputs</filter>
        </data>
        <data name="Clustering_scatterplots" format="pdf" label="${tool.name} on ${on_string}: Clustering_scatterplots.pdf" from_work_dir="outdir/figures/Clustering_scatterplots.pdf">
            <filter>'Clustering_scatterplots' in select_outputs</filter>
        </data>
    </xml>
    <xml name="drep_outputs">
        <expand macro="common_outputs"/>
        <data name="Cluster_scoring" format="pdf" label="${tool.name} on ${on_string}: Cluster_scoring.pdf" from_work_dir="outdir/figures/Cluster_scoring.pdf">

11:f0334664a47b

<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">3.6.2</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@PROFILE@">20.01</token>
    <xml name="biotools">
        <xrefs>
            <xref type="bio.tools">drep</xref>
        </xrefs>

            <option value="warnings" selected="true">Warnings</option>
            <option value="Primary_clustering_dendrogram" selected="true">Primary_clustering_dendrogram.pdf</option>
            <option value="Secondary_clustering_dendrograms">Secondary_clustering_dendrograms.pdf</option>
            <option value="Secondary_clustering_MDS">Secondary_clustering_MDS.pdf</option>
            <option value="Clustering_scatterplots" selected="true">Clustering_scatterplots.pdf</option>
            <option value="Bdb">Bdb.csv Basic genome statistics</option>
            <option value="Cdb">Cdb.csv Clustering results</option>
            <option value="Mdb">Mdb.csv Mash distance matrix</option>
            <option value="Ndb">Ndb.csv ANI results between representative genomes</option>
        <!-- Tdb
            Taxonomy (as determined by centrifuge)
        Sdb
            The score of each genome
        Wdb
            The cluster and score of de-replicated genomes -->
            <yield/>
        </param>
    </xml>
    <xml name="select_drep_outputs">
        <expand macro="select_outputs">
            <option value="Cluster_scoring">Cluster_scoring.pdf</option>
            <option value="Winning_genomes">Winning_genomes.pdf</option>
            <option value="Widb">Widb.csv CheckM information on de-replicated genomes</option>
            <option value="Chdb">Chdb.tsv CheckM results for all genomes</option>
        </expand>
    </xml>
    <xml name="test_default_select_drep_outputs">
        <param name="select_outputs" value="log,warnings,Primary_clustering_dendrogram,Clustering_scatterplots,Cluster_scoring,Winning_genomes,Widb" />
    </xml>

        <data name="Secondary_clustering_MDS" format="pdf" label="${tool.name} on ${on_string}: Secondary_clustering_MDS.pdf" from_work_dir="outdir/figures/Secondary_clustering_MDS.pdf">
            <filter>'Secondary_clustering_MDS' in select_outputs</filter>
        </data>
        <data name="Clustering_scatterplots" format="pdf" label="${tool.name} on ${on_string}: Clustering_scatterplots.pdf" from_work_dir="outdir/figures/Clustering_scatterplots.pdf">
            <filter>'Clustering_scatterplots' in select_outputs</filter>
        </data>
        <data name="Bdb" format="csv" label="${tool.name} on ${on_string}: Bdb Basic genome statistics" from_work_dir="outdir/data_tables/Bdb.csv">
            <filter>'' in select_outputs</filter>
        </data>
        <data name="Cdb" format="csv" label="${tool.name} on ${on_string}: Cdb Clustering results" from_work_dir="outdir/data_tables/Cdb.csv">
            <filter>'Cdb' in select_outputs</filter>
        </data>
        <data name="Mdb" format="csv" label="${tool.name} on ${on_string}: Mdb Mash distance matrix" from_work_dir="outdir/data_tables/Mdb.csv">
            <filter>'' in select_outputs</filter>
        </data>
        <data name="Ndb" format="csv" label="${tool.name} on ${on_string}: Ndb ANI results between representative genomes" from_work_dir="outdir/data_tables/Ndb.csv">
            <filter>'Ndb' in select_outputs</filter>
        </data>
    </xml>
    <xml name="drep_outputs">
        <expand macro="common_outputs"/>
        <data name="Cluster_scoring" format="pdf" label="${tool.name} on ${on_string}: Cluster_scoring.pdf" from_work_dir="outdir/figures/Cluster_scoring.pdf">