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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/drhip commit 15c654c3d27df68a47483031961ace7f5b8d998d
author iuc
date Thu, 04 Dec 2025 15:05:26 +0000
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-1:000000000000 0:dd2d60b55e0d
1 {
2 "MLE":{
3 "content":{
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96 [3.717397283192647, 2.638908983468644e-05, 3.709143426368739, 0.0003015395468531737, 0.09653173627655416, 0, 1, -7.549032224179128, -7.549083190342851, 0.9999999999944202, 1, 0.1854938926000071, 1, -7.549040364953329, 13.80785912625029, 1, -7.549046486135617, 14.18143511951259, 1, -7.549040937002109, 14.09144386979774, 1, -7.549041096804121, 14.18143511951259, 1, -7.549040630097064],
97 [4.914564863748615, 3.825517957831295e-05, 4.942314687200942, 0.000439307469113938, 0.1276192570232928, 0, 1, -5.981342388813351, -5.981396500108888, 0.9999999999935192, 1, 0.700797868595009, 1, -5.981355107032072, 6.466094596027407, 1, -5.981355281298811, 13.7225092906117, 1, -5.98135445349318, 13.7225092906117, 1, -5.981353743952748, 13.7225092906117, 1, -5.981354974254561],
98 [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0],
99 [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0],
100 [4.914564863748615, 3.825517957831295e-05, 4.942314687200942, 0.000439307469113938, 0.1276192570232928, 0, 1, -5.981342388813351, -5.981396500108888, 0.9999999999935192, 1, 0.700797868595009, 1, -5.981355107032072, 6.466094596027407, 1, -5.981355281298811, 13.7225092906117, 1, -5.98135445349318, 13.7225092906117, 1, -5.981353743952748, 13.7225092906117, 1, -5.981354974254561],
101 [7.1268309052325, 0.0008467082930323556, 7.161605714085979, 0.007631547187472146, 0.1850664077680016, 0, 1, -5.265925031101748, -5.267110890177635, 0.9999999854407621, 1, 0.8643253215095575, 1, -5.265962739484887, 2.031993017396854, 1, -5.265972083906938, 14.46698601821335, 1, -5.265988045249418, 14.57600442508006, 1, -5.265957445794986, 14.87789987563041, 1, -5.265961254444006],
102 [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0],
103 [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0],
104 [0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0, 0, 1, 0]
105 ]
106 },
107 "headers": [
108 ["α", "Synonymous substitution rate at a site"],
109 ["β", "Property independent non-synonymous rate a site"],
110 ["FEL α", "Synonymous substitution rate at a site (FEL model)"],
111 ["FEL β", "Log of property independent non-synonymous rate a site"],
112 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"],
113 ["# subs", "The number of amino-acid substitutions that occurred at this site"],
114 ["# aa", "The number of unique amino-acids occurring at that site"],
115 ["PRIME LogL", "Site Log-likelihood under the PRIME model"],
116 ["FEL LogL", "Site Log-likelihood under the FEL model"],
117 ["p-value", "Omnibus q-value (any property is important)"],
118 ["q-value", "Importance for Factor I bipolar"],
119 ["λ1", "p-value for non-zero effect of Factor I bipolar"],
120 ["p1", "Log likelihood when there is no effect of Factor I bipolar"],
121 ["LogL1", "Importance for Factor II secondary structure"],
122 ["λ2", "p-value for non-zero effect of Factor II secondary structure"],
123 ["p2", "Log likelihood when there is no effect of Factor II secondary structure"],
124 ["LogL2", "Importance for Factor III volume"],
125 ["λ3", "p-value for non-zero effect of Factor III volume"],
126 ["p3", "Log likelihood when there is no effect of Factor III volume"],
127 ["LogL3", "Importance for Factor IV composition"],
128 ["λ4", "p-value for non-zero effect of Factor IV composition"],
129 ["p4", "Log likelihood when there is no effect of Factor IV composition"],
130 ["LogL4", "Importance for Factor V charge"],
131 ["λ5", "p-value for non-zero effect of Factor V charge"],
132 ["p5", "Log likelihood when there is no effect of Factor V charge"],
133 ["LogL5", "0"]
134 ],
135 "substitutions":{
136 "0":{
137 "0":null,
138 "1":null,
139 "10":null,
140 "11":null,
141 "12":null,
142 "13":null,
143 "14":null,
144 "15":null,
145 "16":null,
146 "17":null,
147 "18":null,
148 "19":null,
149 "2":null,
150 "20":null,
151 "21":null,
152 "22":null,
153 "23":null,
154 "24":null,
155 "25":{
156 "PP564823_1_2023_10_06":"GGT",
157 "root":"GTT"
158 },
159 "26":{
160 "Node3":"TCA",
161 "Node4":"CCA",
162 "PP564823_1_2023_10_06":"TCA",
163 "root":"CCA"
164 },
165 "27":null,
166 "28":null,
167 "29":null,
168 "3":null,
169 "30":null,
170 "31":null,
171 "32":null,
172 "33":null,
173 "34":{
174 "PP563831_1_2023_08_29":"GAA",
175 "root":"AAA"
176 },
177 "35":null,
178 "36":null,
179 "37":{
180 "Node7":"CTT",
181 "root":"CTC"
182 },
183 "38":{
184 "PP563884_1_2023_09_24":"TTA",
185 "root":"TCA"
186 },
187 "39":null,
188 "4":{
189 "Node4":"CGA",
190 "PP564823_1_2023_10_06":"CGG",
191 "root":"CGG"
192 },
193 "40":{
194 "Node4":"CAA",
195 "root":"CAG"
196 },
197 "41":null,
198 "42":null,
199 "43":null,
200 "44":null,
201 "45":{
202 "PP563880_1_2023_10_05":"CTA",
203 "PP564823_1_2023_10_06":"ATG",
204 "root":"CTG"
205 },
206 "46":null,
207 "47":null,
208 "48":null,
209 "49":{
210 "Node3":"TTC",
211 "root":"TTT"
212 },
213 "5":{
214 "PP564823_1_2023_10_06":"AAG",
215 "root":"AAA"
216 },
217 "50":null,
218 "51":null,
219 "52":null,
220 "53":null,
221 "54":null,
222 "55":{
223 "Node4":"TTT",
224 "root":"TTC"
225 },
226 "56":null,
227 "57":null,
228 "58":null,
229 "59":{
230 "Node3":"CCC",
231 "root":"CCT"
232 },
233 "6":null,
234 "60":null,
235 "61":null,
236 "62":null,
237 "63":{
238 "Node4":"GGA",
239 "root":"GGG"
240 },
241 "64":null,
242 "65":null,
243 "66":null,
244 "67":null,
245 "68":null,
246 "69":{
247 "Node4":"GGC",
248 "PP564823_1_2023_10_06":"AGC",
249 "root":"GGT"
250 },
251 "7":null,
252 "70":null,
253 "71":null,
254 "72":null,
255 "73":null,
256 "74":null,
257 "75":null,
258 "76":null,
259 "77":null,
260 "78":null,
261 "79":null,
262 "8":{
263 "PP564823_1_2023_10_06":"GGT",
264 "root":"GCT"
265 },
266 "80":{
267 "PP563838_1_2023_09_30":"CTG",
268 "PP564823_1_2023_10_06":"TTA",
269 "root":"CTA"
270 },
271 "81":null,
272 "82":null,
273 "83":{
274 "PP563832_1_2023_08_28":"TTT",
275 "root":"TTC"
276 },
277 "84":{
278 "PP564823_1_2023_10_06":"AAA",
279 "root":"AAG"
280 },
281 "85":null,
282 "86":{
283 "PP564823_1_2023_10_06":"GAG",
284 "root":"GAA"
285 },
286 "87":null,
287 "88":null,
288 "89":null,
289 "9":null,
290 "90":null,
291 "91":{
292 "Node4":"TTG",
293 "PP564823_1_2023_10_06":"CTG",
294 "root":"CTG"
295 },
296 "92":{
297 "PP564823_1_2023_10_06":"AAC",
298 "root":"AAT"
299 },
300 "93":null,
301 "94":null,
302 "95":{
303 "PP564823_1_2023_10_06":"AAC",
304 "root":"AAT"
305 },
306 "96":{
307 "PP564823_1_2023_10_06":"AGG",
308 "root":"AGA"
309 },
310 "97":null,
311 "98":null,
312 "99":null
313 }
314 }
315 },
316 "analysis":{
317 "authors":"Sergei L. Kosakovsky Pond",
318 "citation":"TBD",
319 "contact":"spond@temple.edu",
320 "info":"PRIME (PRoperty Informed Model of Evolution). Given a set of N amino-acid properties,\n fit a site-level model where non-synonymous rates depend on how much a non-synonymous substitution changes the \n properties of the residue, beta (X,Y) = Exp (log_omega - lambda_1 * diff_1 (X,Y )- lambda_2 * diff_2 (X,Y) -...).\n When lambda_k > 0, changes in property k are disfavored and when lambda_k < 0 -- they are promoted.\n At each site, N tests are performed\n A subset of branches can be selected\n for testing as well, in which case an additional (nuisance) parameter will be\n inferred -- the non-synonymous rate on branches NOT selected for testing. Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
321 "requirements":"in-frame codon alignment and a phylogenetic tree",
322 "residue_properties":"Atchley",
323 "version":"0.2.0"
324 },
325 "branch attributes":{
326 "0":{
327 "Node3":{
328 "Global MG94xREV":0.007049643511684335,
329 "Nucleotide GTR":0.007289662052004695
330 },
331 "Node4":{
332 "Global MG94xREV":0.01561082867520729,
333 "Nucleotide GTR":0.01388744473547059
334 },
335 "Node7":{
336 "Global MG94xREV":0.006613667342454805,
337 "Nucleotide GTR":0.006185828741026453
338 },
339 "PP563828_1_2023_09_04":{
340 "Global MG94xREV":0,
341 "Nucleotide GTR":1e-06,
342 "original name":"PP563828_1_2023_09_04"
343 },
344 "PP563831_1_2023_08_29":{
345 "Global MG94xREV":0.003311403263977385,
346 "Nucleotide GTR":0.0033386370737857,
347 "original name":"PP563831_1_2023_08_29"
348 },
349 "PP563832_1_2023_08_28":{
350 "Global MG94xREV":0.003310210799301318,
351 "Nucleotide GTR":0.003341256955363836,
352 "original name":"PP563832_1_2023_08_28"
353 },
354 "PP563838_1_2023_09_30":{
355 "Global MG94xREV":0.003319901980605924,
356 "Nucleotide GTR":0.003338636346485376,
357 "original name":"PP563838_1_2023_09_30"
358 },
359 "PP563839_1_2023_09_29":{
360 "Global MG94xREV":0,
361 "Nucleotide GTR":1e-06,
362 "original name":"PP563839_1_2023_09_29"
363 },
364 "PP563845_1_2023_10_22":{
365 "Global MG94xREV":0.00588335347636994,
366 "Nucleotide GTR":0.007154900994762849,
367 "original name":"PP563845_1_2023_10_22"
368 },
369 "PP563880_1_2023_10_05":{
370 "Global MG94xREV":0.003316207961324058,
371 "Nucleotide GTR":0.003342118030716714,
372 "original name":"PP563880_1_2023_10_05"
373 },
374 "PP563884_1_2023_09_24":{
375 "Global MG94xREV":0.00331431000421138,
376 "Nucleotide GTR":0.003341256955567041,
377 "original name":"PP563884_1_2023_09_24"
378 },
379 "PP564823_1_2023_10_06":{
380 "Global MG94xREV":0.0443955944090025,
381 "Nucleotide GTR":0.04196108121510467,
382 "original name":"PP564823_1_2023_10_06"
383 }
384 },
385 "attributes":{
386 "Global MG94xREV":{
387 "attribute type":"branch length",
388 "display order":1
389 },
390 "Nucleotide GTR":{
391 "attribute type":"branch length",
392 "display order":0
393 },
394 "original name":{
395 "attribute type":"node label",
396 "display order":-1
397 }
398 }
399 },
400 "data partitions":{
401 "0":{
402 "coverage": [
403 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99]
404 ],
405 "name":"prime.filter.default"
406 }
407 },
408 "fits":{
409 "Global MG94xREV":{
410 "AIC-c":1127.910824156187,
411 "Equilibrium frequencies": [
412 [0.04024763514913952],
413 [0.01922996663172304],
414 [0.03420070900547616],
415 [0.014368896284083],
416 [0.03368306905822573],
417 [0.01609347460151461],
418 [0.02862242313127222],
419 [0.01202526618107644],
420 [0.03424262136543949],
421 [0.01636082378008254],
422 [0.02909790661151763],
423 [0.01222503317454278],
424 [0.04878002735358049],
425 [0.02330666869812213],
426 [0.04145116886040549],
427 [0.01741506429336918],
428 [0.01835841860430346],
429 [0.008771491191067078],
430 [0.0156001944004883],
431 [0.006554179193076294],
432 [0.01536407988586604],
433 [0.007340822446772941],
434 [0.01305573416590236],
435 [0.0054851637757677],
436 [0.0156193121609741],
437 [0.007462770186447074],
438 [0.01327261957388795],
439 [0.005576284808737427],
440 [0.02225035479396483],
441 [0.01063102412468302],
442 [0.01890739435390807],
443 [0.007943647847477694],
444 [0.02003764925766833],
445 [0.009573812850750063],
446 [0.01702713237376286],
447 [0.007153685002693248],
448 [0.01676942064321455],
449 [0.008012281919357385],
450 [0.01424993228754379],
451 [0.005986887554352669],
452 [0.01704799882132915],
453 [0.008145384126471394],
454 [0.01448665603962682],
455 [0.006086343359234239],
456 [0.02428557790460417],
457 [0.01160343585423386],
458 [0.0206368394035431],
459 [0.008670247303157035],
460 [0.01086675715317312],
461 [0.008119790817560615],
462 [0.01903413243710357],
463 [0.009094341326464849],
464 [0.01617438694822276],
465 [0.006795417266946891],
466 [0.009245418998841326],
467 [0.01644308026470771],
468 [0.006908304587387538],
469 [0.02756534742509875],
470 [0.0131704809291841],
471 [0.02342384645525713],
472 [0.009841164995614077]
473 ],
474 "Log Likelihood":-535.0231503100108,
475 "Rate Distributions":{
476 "non-synonymous/synonymous rate ratio for *background*": [
477 [0.2330662032673943, 1]
478 ],
479 "non-synonymous/synonymous rate ratio for *test*": [
480 [0.0543349869082771, 1]
481 ]
482 },
483 "display order":1,
484 "estimated parameters":28
485 },
486 "Nucleotide GTR":{
487 "AIC-c":1165.694393932368,
488 "Equilibrium frequencies": [
489 [0.3348148148148147],
490 [0.202962962962963],
491 [0.2462962962962963],
492 [0.2159259259259259]
493 ],
494 "Log Likelihood":-559.6409189392783,
495 "Rate Distributions":{
496 "Substitution rate from nucleotide A to nucleotide C":0.1057602468701381,
497 "Substitution rate from nucleotide A to nucleotide G":1,
498 "Substitution rate from nucleotide A to nucleotide T":0,
499 "Substitution rate from nucleotide C to nucleotide G":0.1465960735122673,
500 "Substitution rate from nucleotide C to nucleotide T":2.269319946484975,
501 "Substitution rate from nucleotide G to nucleotide T":0.1391184331291334
502 },
503 "display order":0,
504 "estimated parameters":23
505 }
506 },
507 "input":{
508 "file name":"/home/dcallan-adm/Documents/veg/CAPHEINE/work/a3/7f92afc4ab3867f3c9f3835478bffe/capsid_protein_C-nodups.fasta",
509 "number of sequences":9,
510 "number of sites":100,
511 "partition count":1,
512 "trees":{
513 "0":"(PP563828_1_2023_09_04,PP563831_1_2023_08_29,PP563880_1_2023_10_05,((PP564823_1_2023_10_06,PP563845_1_2023_10_22)Node4,(PP563884_1_2023_09_24,PP563838_1_2023_09_30,PP563839_1_2023_09_29)Node7)Node3,PP563832_1_2023_08_28)"
514 }
515 },
516 "model":{
517 "Q": [
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579 ],
580 "alphabet": [
581 ["AAA", "AAC", "AAG", "AAT", "ACA", "ACC", "ACG", "ACT", "AGA", "AGC", "AGG", "AGT", "ATA", "ATC", "ATG", "ATT", "CAA", "CAC", "CAG", "CAT", "CCA", "CCC", "CCG", "CCT", "CGA", "CGC", "CGG", "CGT", "CTA", "CTC", "CTG", "CTT", "GAA", "GAC", "GAG", "GAT", "GCA", "GCC", "GCG", "GCT", "GGA", "GGC", "GGG", "GGT", "GTA", "GTC", "GTG", "GTT", "TAC", "TAT", "TCA", "TCC", "TCG", "TCT", "TGC", "TGG", "TGT", "TTA", "TTC", "TTG", "TTT"]
582 ],
583 "ordering":{
584 "Factor I bipolar":0,
585 "Factor II secondary structure":1,
586 "Factor III volume":2,
587 "Factor IV composition":3,
588 "Factor V charge":4
589 },
590 "parameters":{
591 "lambda_Factor_III_volume":"Factor III volume",
592 "lambda_Factor_II_secondary_structure":"Factor II secondary structure",
593 "lambda_Factor_IV_composition":"Factor IV composition",
594 "lambda_Factor_I_bipolar":"Factor I bipolar",
595 "lambda_Factor_V_charge":"Factor V charge"
596 },
597 "residue_properties":{
598 "Factor I bipolar":{
599 "A":-0.6038471648233061,
600 "C":-1.372194149505415,
601 "D":1.072824912122625,
602 "E":1.38649848166705,
603 "F":-1.027868439614629,
604 "G":-0.3923473964334172,
605 "H":0.3433039718792401,
606 "I":-1.265933396304698,
607 "K":1.870802299139549,
608 "L":-1.041151033764719,
609 "M":-0.6774123016545719,
610 "N":0.9655424209103626,
611 "P":0.1931084841820725,
612 "Q":0.9512380887487276,
613 "R":1.571433061756759,
614 "S":-0.2329562666323415,
615 "T":-0.03269561636945143,
616 "V":-1.366063721436143,
617 "W":-0.6079341168694875,
618 "Y":0.2656518830017929
619 },
620 "Factor II secondary structure":{
621 "A":-1.330232386778897,
622 "C":0.475221663023938,
623 "D":0.3086744020630652,
624 "E":-1.48451849969357,
625 "F":-0.6027376027044098,
626 "G":1.688053557260477,
627 "H":-0.4259727183717044,
628 "I":-0.5588018222055293,
629 "K":-0.5731064949260951,
630 "L":-1.008377250566167,
631 "M":-1.557063625633582,
632 "N":0.8461213914214641,
633 "P":2.126389599912099,
634 "Q":-0.1827932821220867,
635 "R":-0.05609475231136144,
636 "S":1.42954768595311,
637 "T":0.3331966981554637,
638 "V":-0.2849695158404135,
639 "W":0.009298037268367709,
640 "Y":0.8481649160958307
641 },
642 "Factor III volume":{
643 "A":-0.3445293132340136,
644 "C":-0.4051709852318138,
645 "D":-1.718603788036881,
646 "E":0.6943706488988424,
647 "F":0.8889881078685267,
648 "G":0.6252673482501864,
649 "H":-0.7864143650009298,
650 "I":1.001809823213271,
651 "K":0.2506052352095138,
652 "L":-0.7074391642596085,
653 "M":1.043177785506344,
654 "N":0.6106945433514901,
655 "P":-0.7652602933737901,
656 "Q":-1.412574885164262,
657 "R":0.7061229109139199,
658 "S":-2.237583678622706,
659 "T":1.040357242622726,
660 "V":-0.2556822124000274,
661 "W":0.315947812013345,
662 "Y":1.455917227475868
663 },
664 "Factor IV composition":{
665 "A":1.630293655002852,
666 "C":-1.059000381337118,
667 "D":-0.2688255698874202,
668 "E":0.1174359673783979,
669 "F":-0.4121161401634496,
670 "G":1.08516648547448,
671 "H":-1.530405590795939,
672 "I":0.4081704577935299,
673 "K":-0.2875156442712501,
674 "L":1.314639065409281,
675 "M":-1.043425319350593,
676 "N":-0.1753751979682707,
677 "P":0.4372439068350431,
678 "Q":-0.5221799115348923,
679 "R":0.4569723186846413,
680 "S":0.6957899358113568,
681 "T":0.942914252664219,
682 "V":1.289718966230841,
683 "W":-2.209478293408426,
684 "Y":-0.8700229625672823
685 },
686 "Factor V charge":{
687 "A":-0.09353709405505788,
688 "C":-0.1633935055110449,
689 "D":-2.077715533208598,
690 "E":-0.5363882896154895,
691 "F":0.2640764618388941,
692 "G":1.322817670327799,
693 "H":-0.0499569474586623,
694 "I":0.5229938033821855,
695 "K":1.056209714679261,
696 "L":-0.5844546277732787,
697 "M":0.7767840688553127,
698 "N":0.5979772909083368,
699 "P":-0.8920791919831299,
700 "Q":-1.187526950526341,
701 "R":1.856674466133644,
702 "S":-1.696389250490137,
703 "T":0.8415134042411355,
704 "V":-0.8087642058429619,
705 "W":-0.1178907053883378,
706 "Y":0.9690494214864698
707 }
708 },
709 "translation-table":{
710 "AAA":"K",
711 "AAC":"N",
712 "AAG":"K",
713 "AAT":"N",
714 "ACA":"T",
715 "ACC":"T",
716 "ACG":"T",
717 "ACT":"T",
718 "AGA":"R",
719 "AGC":"S",
720 "AGG":"R",
721 "AGT":"S",
722 "ATA":"I",
723 "ATC":"I",
724 "ATG":"M",
725 "ATT":"I",
726 "CAA":"Q",
727 "CAC":"H",
728 "CAG":"Q",
729 "CAT":"H",
730 "CCA":"P",
731 "CCC":"P",
732 "CCG":"P",
733 "CCT":"P",
734 "CGA":"R",
735 "CGC":"R",
736 "CGG":"R",
737 "CGT":"R",
738 "CTA":"L",
739 "CTC":"L",
740 "CTG":"L",
741 "CTT":"L",
742 "GAA":"E",
743 "GAC":"D",
744 "GAG":"E",
745 "GAT":"D",
746 "GCA":"A",
747 "GCC":"A",
748 "GCG":"A",
749 "GCT":"A",
750 "GGA":"G",
751 "GGC":"G",
752 "GGG":"G",
753 "GGT":"G",
754 "GTA":"V",
755 "GTC":"V",
756 "GTG":"V",
757 "GTT":"V",
758 "TAA":"X",
759 "TAC":"Y",
760 "TAG":"X",
761 "TAT":"Y",
762 "TCA":"S",
763 "TCC":"S",
764 "TCG":"S",
765 "TCT":"S",
766 "TGA":"X",
767 "TGC":"C",
768 "TGG":"W",
769 "TGT":"C",
770 "TTA":"L",
771 "TTC":"F",
772 "TTG":"L",
773 "TTT":"F"
774 }
775 },
776 "runtime":"2.5.70",
777 "tested":{
778 "0":{
779 "Node3":"test",
780 "Node4":"test",
781 "Node7":"test",
782 "PP563828_1_2023_09_04":"background",
783 "PP563831_1_2023_08_29":"background",
784 "PP563832_1_2023_08_28":"background",
785 "PP563838_1_2023_09_30":"background",
786 "PP563839_1_2023_09_29":"background",
787 "PP563845_1_2023_10_22":"background",
788 "PP563880_1_2023_10_05":"background",
789 "PP563884_1_2023_09_24":"background",
790 "PP564823_1_2023_10_06":"background"
791 }
792 },
793 "timers":{
794 "Model fitting":{
795 "order":1,
796 "timer":1
797 },
798 "PRIME analysis":{
799 "order":2,
800 "timer":32
801 },
802 "Total time":{
803 "order":0,
804 "timer":33
805 }
806 }
807 }