emboss_needle: test-data/emboss_needleall

comparison test-data/emboss_needleall_out.pair @ 0:2f0dc62d0a19 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss commit 08f38b1f9b4241ba9037c64f732621efc628fd43

author	iuc
date	Mon, 20 Jan 2025 16:22:05 +0000
parents
children

comparison

equal deleted inserted replaced

--1:000000000000
+:2f0dc62d0a19
+########################################
+# Program: needleall
+# Rundate: Mon 16 Dec 2024 17:13:24
+# Commandline: needleall
+#    -asequence /tmp/saskia/tmpet25av5g/files/e/e/8/dataset_ee891bb1-6c31-453a-8e30-69544c761887.dat
+#    -bsequence /tmp/saskia/tmpet25av5g/files/0/7/0/dataset_07021fba-c6f2-478f-8665-0e6832dba409.dat
+#    -outfile /tmp/saskia/tmpet25av5g/job_working_directory/000/9/outputs/dataset_b9c62224-ff77-442f-a21f-1e30d4ffb6fc.dat
+#    -gapopen 10.0
+#    -gapextend 0.5
+#    -brief yes
+#    -aformat3 pair
+#    -auto
+#    -datafile EPAM30
+#    -endopen 13.37
+#    -endextend 2.5
+#    -minscore 1.0
+# Align_format: pair
+# Report_file: /tmp/saskia/tmpet25av5g/job_working_directory/000/9/outputs/dataset_b9c62224-ff77-442f-a21f-1e30d4ffb6fc.dat
+########################################
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          16/37 (43.2%)
+# Score: 61.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG----     33
+|.|      |||||     ||..|||..| .||
+FC12044_91407      1 GTT------AGCTC-----CCACCTTAAG-ATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Geno      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+.|      |||| ||        |||..|||.|
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCT     48
+|.||  ||..|||||  .||||.|      ||.
+FC12044_91407      1 ---GTTA--GCTCCCACCTTAAGATGT------TTA--------------     25
+Illumina_Geno     49 CTTCCGATCT     58
+FC12044_91407     26 ----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      11/47 (23.4%)
+# Similarity:    11/47 (23.4%)
+# Gaps:          35/47 (74.5%)
+# Score: 49.0
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACG--AGCTCTTCCGATCT-----------     34
+|  |||||  || |.||
+FC12044_91407      1 -------------------GTTAGCTC--CC-ACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Geno      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+.|      |||| ||        |||..|||.|
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          33/45 (73.3%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCC------GAG-------     32
+||| |||.      ||      .||
+FC12044_91407      1 -------------GTT-AGCT------CCCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Pair      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+.|      |||| ||        |||..|||.|
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCT     48
+|.||  ||..|||||  .||||.|      ||.
+FC12044_91407      1 ---GTTA--GCTCCCACCTTAAGATGT------TTA--------------     25
+Illumina_Pair     49 CTTCCGATCT     58
+FC12044_91407     26 ----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 67
+# Identity:      15/67 (22.4%)
+# Similarity:    15/67 (22.4%)
+# Gaps:          48/67 (71.6%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGT---CTCGGCATTCCTGCTGAAC     47
+||   |||               |
+FC12044_91407      1 --------------------------GTTAGCTC---------------C      9
+Illumina_Pair     48 CGCTCTTCCGATCT---     61
+|.| |||..|||.|
+FC12044_91407     10 CAC-CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Pair      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+.|      |||| ||        |||..|||.|
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          24/43 (55.8%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGT---CTCGGCATTCCTGCTGAACCGCTCTTCCGATCT---     37
+||   |||               ||.| |||..|||.|
+FC12044_91407      1 --GTTAGCTC---------------CCAC-CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       9/42 (21.4%)
+# Similarity:     9/42 (21.4%)
+# Gaps:          33/42 (78.6%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGAAC----------------     26
+||       |||  |||    |
+FC12044_91407      1 ----GT-------TAG--CTC----CCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      10/40 (25.0%)
+# Similarity:    10/40 (25.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAG-TCCGAC-------------     26
+|||    || |||.||
+FC12044_91407      1 -----------GTT----AGCTCCCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --------CAAGCAGAAGACGGCATACGA------     21
+|   |     ||  |.||.||
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATG---CCGTCTTCTGCTTG----     21
+||..|   ||..|||..| .||
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --------CAAGCAGAAGACGGCATACGA------     21
+|   |     ||  |.||.||
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+|.||  ||..|||||      ||.||| ||| ||
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAG-TCCGACGATC------------     32
+|||    || |||.||   |
+FC12044_91407      1 -------------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       7/37 (18.9%)
+# Similarity:     7/37 (18.9%)
+# Gaps:          28/37 (75.7%)
+# Score: 31.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGAAC----------------     21
+||. |.|||    |
+FC12044_91407      1 -------GTT-AGCTC----CCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          26/40 (65.0%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAG-TCCGAC------ATG----     29
+|||    || |||.||      |||
+FC12044_91407      1 -----------GTT----AGCTCCCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       9/36 (25.0%)
+# Similarity:     9/36 (25.0%)
+# Gaps:          24/36 (66.7%)
+# Score: 26.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---------CAAGC----AGAAGACGGCATACGANN     23
+||  |    |||.|.    .||
+FC12044_91407      1 GTTAGCTCCCA--CCTTAAGATGT----TTA-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATG---CCGTCTTCTGCTTG----     21
+||..|   ||..|||..| .||
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+#
+#
+#=======================================
+Illumina_NlaI      1 --------CAAGCAGAAGACGGCATACGA------     21
+|   |     ||  |.||.||
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+|.||  ||..|||||      ||.||| ||| ||
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAG-TCCGAC------ATG----     32
+|||    || |||.||      |||
+FC12044_91407      1 --------------GTT----AGCTCCCACCTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+#
+#
+#=======================================
+Illumina_Smal      1 --------CAAGCAGAAGACGGCATACGA------     21
+|   |     ||  |.||.||
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      11/39 (28.2%)
+# Similarity:    11/39 (28.2%)
+# Gaps:          27/39 (69.2%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAG-TCCGACGATC------------     26
+|||    || |||.||   |
+FC12044_91407      1 -------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:           9/28 (32.1%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATG---CCGTCTTCTGCTTGT---     22
+||..|   ||..|||..| .|||
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+#
+#
+#=======================================
+Illumina_Smal      1 --------CAAGCAGAAGACGGCATACGA------     21
+|   |     ||  |.||.||
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+|.||  ||..|||||      ||.||| ||| ||
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAG-TCCGACGATC------------     32
+|||    || |||.||   |
+FC12044_91407      1 -------------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTATG-----CCGT-CTTCTGCTTG     33
+||| |.||     ||.| |.||. |||
+FC12044_91407      1 -----------CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+||||.|     |||..| |  |.|.|||
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 92.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGC     47
+|     |||   .|||.|..|||||        |
+FC12044_91407      1 ----------------C-----TCTGTGGCACCCCATCCCT--------C     21
+Illumina_Geno     48 TCTTCCGATCT     58
+.|||
+FC12044_91407     22 ACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          19/39 (48.7%)
+# Score: 61.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT-----     34
+|.  |.|.    |||  ||   |.|.|||   ||
+FC12044_91407      1 CT--CTGT----GGC--AC---CCCATCC---CTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+||||.|     |||..| |  |.|.|||
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 21.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATG----CCGAG---------     32
+|   ||.|      ||    ||.|.
+FC12044_91407      1 -----------C---TCTG------TGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+||||.|     |||..| |  |.|.|||
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 92.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGC     47
+|     |||   .|||.|..|||||        |
+FC12044_91407      1 ----------------C-----TCTGTGGCACCCCATCCCT--------C     21
+Illumina_Pair     48 TCTTCCGATCT     58
+.|||
+FC12044_91407     22 ACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      16/64 (25.0%)
+# Similarity:    16/64 (25.0%)
+# Gaps:          42/64 (65.6%)
+# Score: 86.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTC---GGCATTCCTGCTGAAC     47
+|||   ||||..||..|    |
+FC12044_91407      1 ----------------------------CTCTGTGGCACCCCATC----C     18
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+|.|.|||
+FC12044_91407     19 CTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+||||.|     |||..| |  |.|.|||
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      16/40 (40.0%)
+# Similarity:    16/40 (40.0%)
+# Gaps:          18/40 (45.0%)
+# Score: 86.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTC---GGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+|||   ||||..||..|    ||.|.|||
+FC12044_91407      1 ----CTCTGTGGCACCCCATC----CCTCACTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAA--------CTCTGAAC--     26
+|  .||||.|.|        |||   ||
+FC12044_91407      1 ------C--TCTGTGGCACCCCATCCCTC---ACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       8/40 (20.0%)
+# Similarity:     8/40 (20.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGT------CCGAC--------     26
+|| |.||      ||..|
+FC12044_91407      1 --------------CT-CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      14/28 (50.0%)
+# Similarity:    14/28 (50.0%)
+# Gaps:          10/28 (35.7%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -TCGTATG-----CCGT-CTTCTGCTTG     21
+|| |.||     ||.| |.||. |||
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+|     ||| |||   .||  |    |||     ||.
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+Illumina_DpnI     43 GA     44
+FC12044_91407     26 --     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------     32
+|| |.||    ||  |.|||
+FC12044_91407      1 ----------------CT-CTGTGGCACC--CCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAA--------CTCTGAAC--     21
+|  .||||.|.|        |||   ||
+FC12044_91407      1 -C--TCTGTGGCACCCCATCCCTC---ACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          16/35 (45.7%)
+# Score: 44.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACA----GTCC--GACATG     29
+|    ||.|.|    .||    .|||  .||.|
+FC12044_91407      1 -C----TCTGTG----GCACCCCATCCCTCACTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          10/29 (34.5%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCAT-----ACGANN     23
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      14/28 (50.0%)
+# Similarity:    14/28 (50.0%)
+# Gaps:          10/28 (35.7%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGTATG-----CCGT-CTTCTGCTTG     21
+|| |.||     ||.| |.||. |||
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+|     ||| |||   .||  |    |||     ||.
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+Illumina_NlaI     43 GA     44
+FC12044_91407     26 --     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 46.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -----------CCGACAGGTTCAGAGTTCTACAGTCCGACATG     32
+||  ||   ||      |  |  ||  ||.|
+FC12044_91407      1 CTCTGTGGCACCC--CA---TC------C--C--TC--ACTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      11/38 (28.9%)
+# Similarity:    11/38 (28.9%)
+# Gaps:          25/38 (65.8%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAGT----CCGACGATC--------     26
+|| |.||    ||  |.|||
+FC12044_91407      1 ----------CT-CTGTGGCACC--CCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          11/29 (37.9%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_Smal      1 -TCGTATG-----CCGT-CTTCTGCTTGT     22
+|| |.||     ||.| |.||. |||
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+|.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+|     ||| |||   .||  |    |||     ||.
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+Illumina_Smal     43 GA     44
+FC12044_91407     26 --     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------     32
+|| |.||    ||  |.|||
+FC12044_91407      1 ----------------CT-CTGTGGCACC--CCATCCCTCACTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      12/40 (30.0%)
+# Similarity:    12/40 (30.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 37.5
+#
+#
+#=======================================
+Illumina_Geno      1 GAT-------CGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+|||       |...|.|   ||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAA---CGTA------------CATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+#
+#
+#=======================================
+Illumina_Geno      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+|   |.|||   || ||    .|||..|.|   |
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      13/69 (18.8%)
+# Similarity:    13/69 (18.8%)
+# Gaps:          55/69 (79.7%)
+# Score: 47.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA     39
+||| |.|||               ||||         ||
+FC12044_91407      1 GATTTTTTAACAAT-AAACG---------------TACA---------TA     25
+Illumina_Geno     40 CACGACGCTCTTCCGATCT     58
+FC12044_91407     26 -------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          31/45 (68.9%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----------CAAGCAGAAGACG-GCATACGAGCTCTTCCGATCT     34
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA----------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+#
+#
+#=======================================
+Illumina_Geno      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+|   |.|||   || ||    .|||..|.|   |
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          21/39 (53.8%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Pair      1 GAT-------CGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+|||       | .|..|.| ||.||     .|
+FC12044_91407      1 GATTTTTTAAC-AATAAAC-GTACA-----TA-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+#
+#
+#=======================================
+Illumina_Pair      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+|   |.|||   || ||    .|||..|.|   |
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      13/69 (18.8%)
+# Similarity:    13/69 (18.8%)
+# Gaps:          55/69 (79.7%)
+# Score: 47.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA     39
+||| |.|||               ||||         ||
+FC12044_91407      1 GATTTTTTAACAAT-AAACG---------------TACA---------TA     25
+Illumina_Pair     40 CACGACGCTCTTCCGATCT     58
+FC12044_91407     26 -------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 72
+# Identity:      11/72 (15.3%)
+# Similarity:    11/72 (15.3%)
+# Gaps:          58/72 (80.6%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Pair      1 ----------CAAGCAGAAGACG-GCATACGAGATCGGTCTCGGCATTCC     39
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---------------------     25
+Illumina_Pair     40 TGCTGAACCGCTCTTCCGATCT     61
+FC12044_91407     26 ----------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+#
+#
+#=======================================
+Illumina_Pair      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+|   |.|||   || ||    .|||..|.|   |
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          24/43 (55.8%)
+# Score: 28.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAAC------CGCTCTTCCGATCT     37
+|.|      .||     |.|||      ||..|.|   |
+FC12044_91407      1 -GAT------TTT-----TTAACAATAAACGTACAT---A---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGAAC-------     26
+|||        |.|..|||..|.|||
+FC12044_91407      1 GAT--------TTTTTAACAATAAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      14/33 (42.4%)
+# Similarity:    14/33 (42.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCT-ACAGT--CCG-AC---     26
+|.||     ||.| |||.|  .|| ||
+FC12044_91407      1 ---GATT-----TTTTAACAATAAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       6/37 (16.2%)
+# Similarity:     6/37 (16.2%)
+# Gaps:          28/37 (75.7%)
+# Score: 26.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------------TCGTATGCCGTCTTCTGCTTG     21
+.||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+||| |.||               ||.||      ||
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+Illumina_DpnI     40 TCCGA     44
+FC12044_91407     26 -----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          15/36 (41.7%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCT-ACAGTCCGACGATC---     32
+|.||     ||.| |||.| ..|||..|
+FC12044_91407      1 -----GATT-----TTTTAACAAT-AAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 47.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGAAC-------     21
+||.|.|..|||..|.|||
+FC12044_91407      1 ---GATTTTTTAACAATAAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      16/33 (48.5%)
+# Similarity:    16/33 (48.5%)
+# Gaps:          12/33 (36.4%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCT-ACAGT--CCG-ACATG     29
+|.||     ||.| |||.|  .|| ||||.
+FC12044_91407      1 ---GATT-----TTTTAACAATAAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------CAAGCAGAAGACG-GCATACGANN     23
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       6/37 (16.2%)
+# Similarity:     6/37 (16.2%)
+# Gaps:          28/37 (75.7%)
+# Score: 26.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------------TCGTATGCCGTCTTCTGCTTG     21
+.||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+||| |.||               ||.||      ||
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+Illumina_NlaI     40 TCCGA     44
+FC12044_91407     26 -----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          15/36 (41.7%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCT-ACAGT--CCG-ACATG     32
+|.||     ||.| |||.|  .|| ||||.
+FC12044_91407      1 ------GATT-----TTTTAACAATAAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------CAAGCAGAAGACG-GCATACGA     21
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          11/31 (35.5%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCT--ACAGTCCGACGATC---     26
+||.||.|  |||.| ..|||..|
+FC12044_91407      1 -----GATTTTTTAACAAT-AAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       6/38 (15.8%)
+# Similarity:     6/38 (15.8%)
+# Gaps:          29/38 (76.3%)
+# Score: 26.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------------TCGTATGCCGTCTTCTGCTTGT     22
+.||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------CAAGCAGAAGACG-GCATACGA     21
+|||    .|.||| .||||
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_Smal      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+||| |.||               ||.||      ||
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+Illumina_Smal     40 TCCGA     44
+FC12044_91407     26 -----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          15/36 (41.7%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCT-ACAGTCCGACGATC---     32
+|.||     ||.| |||.| ..|||..|
+FC12044_91407      1 -----GATT-----TTTTAACAAT-AAACGTACATA     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_Geno      1 GAT---CGGAAGAGCTCGTATGCCGTCTT---CTGCTTG     33
+|.|   |.|    |||       ||||||   ||.|
+FC12044_91407      1 GTTGCCCAG----GCT-------CGTCTTGAACTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+.||.|||. .|.||    ||||  ||.||
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      16/61 (26.2%)
+# Similarity:    16/61 (26.2%)
+# Gaps:          39/61 (63.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCT-ACACGACGCTC     49
+. ||.|||. .|.||    ||
+FC12044_91407      1 -----------------------------G-TTGCCCAGGCTCG----TC     16
+Illumina_Geno     50 TTCCGATCT--     58
+||  ||.||
+FC12044_91407     17 TT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          21/40 (52.5%)
+# Score: 69.0
+#
+#
+#=======================================
+Illumina_Geno      1 ------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+||.||     .||.|.|  ||.|||  |
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+.||.|||. .|.||    ||||  ||.||
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 46.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTT---CAG------CAGGAA-TGCCGAG     32
+|||   |||      |..||| | ||
+FC12044_91407      1 -------------GTTGCCCAGGCTCGTCTTGAACT-CC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+.||.|||. .|.||    ||||  ||.||
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      16/61 (26.2%)
+# Similarity:    16/61 (26.2%)
+# Gaps:          39/61 (63.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCT-ACACGACGCTC     49
+. ||.|||. .|.||    ||
+FC12044_91407      1 -----------------------------G-TTGCCCAGGCTCG----TC     16
+Illumina_Pair     50 TTCCGATCT--     58
+||  ||.||
+FC12044_91407     17 TT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      19/64 (29.7%)
+# Similarity:    19/64 (29.7%)
+# Gaps:          42/64 (65.6%)
+# Score: 83.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGAT---CGGTCTCGGCATTCCTGCTGAAC     47
+|.|   |.|.||||   |  ||  |||||
+FC12044_91407      1 ---------------------GTTGCCCAGGCTCG---T--CT--TGAAC     22
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+|||
+FC12044_91407     23 ------TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+.||.|||. .|.||    ||||  ||.||
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      17/43 (39.5%)
+# Similarity:    17/43 (39.5%)
+# Gaps:          24/43 (55.8%)
+# Score: 82.5
+#
+#
+#=======================================
+Illumina_Pair      1 ------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+|.|.||||   |  ||  |||||      |||
+FC12044_91407      1 GTTGCCCAGGCTCG---T--CT--TGAAC------TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          19/35 (54.3%)
+# Score: 77.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---------GATCGTCGGACTGTAGAACTCTGAAC     26
+|.|||||      |.||||||    |
+FC12044_91407      1 GTTGCCCAGGCTCGTC------TTGAACTC----C     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 63.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -----ACAGGTTCAGAGTTCT---ACAGTCCGAC     26
+.||||.||.    |||   ||  |||
+FC12044_91407      1 GTTGCCCAGGCTCG----TCTTGAAC--TCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+||.||     .||.|.|  ||
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          16/31 (51.6%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGC-------CGTCTT---CTGCTTG     21
+|| |||       ||||||   ||.|
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+||.||     .||.|.|  ||
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+|.|.|     |||  |.|    ||.    |||   ||  |||
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -----CGACAGGTTCAGAGTTCT---ACAGTCCGACGATC     32
+|  ||||.||.    |||   ||  |||
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 61.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----------TCGGACTGTAGAACTCTGAAC     21
+|| |.|  |.||||||    |
+FC12044_91407      1 GTTGCCCAGGCTC-GTC--TTGAACTC----C     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 63.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----ACAGGTTCAGAGTTCT---ACAGTCCGACATG     29
+.||||.||.    |||   ||  |||
+FC12044_91407      1 GTTGCCCAGGCTCG----TCTTGAAC--TCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          20/34 (58.8%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ------CAAGCAGAAGACGGCATA-----CGANN     23
+||.||     .||.|.|.     |
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTTGAACTCC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          16/31 (51.6%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGC-------CGTCTT---CTGCTTG     21
+|| |||       ||||||   ||.|
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+||.||     .||.|.|  ||
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+|.|.|     |||  |.|    ||.    |||   ||  |||
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----CCGACAGGTTCAGAGTTCT---ACAGTCCGACATG     32
+||  ||||.||.    |||   ||  |||
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_Smal      1 ------CAAGCAGAAGACGGCATACGA-----     21
+||.||     .||.|.|  ||
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      15/34 (44.1%)
+# Similarity:    15/34 (44.1%)
+# Gaps:          17/34 (50.0%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTT---CAGAGT--TCT---ACAGTCCGACGATC     26
+|||   |||..|  |||   ||  |||
+FC12044_91407      1 GTTGCCCAGGCTCGTCTTGAAC--TCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          17/32 (53.1%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGC-------CGTCTT---CTGCTTGT     22
+|| |||       ||||||   ||.|
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_Smal      1 ------CAAGCAGAAGACGGCATACGA-----     21
+||.||     .||.|.|  ||
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+|.|.|     |||  |.|    ||.    |||   ||  |||
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Smal      1 -----CGACAGGTTCAGAGTTCT---ACAGTCCGACGATC     32
+|  ||||.||.    |||   ||  |||
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          16/37 (43.2%)
+# Score: 55.0
+#
+#
+#=======================================
+Illumina_Geno      1 -GATCGGAAGAGCTCGTATGCCGT--C-TTCTGCTTG     33
+||| .||||     |||.|  ||  | |.|||
+FC12044_91407      1 TGAT-TGAAG-----GTAGG--GTAGCATACTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||         |||. |
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATC---TA-CACTCTTTCCCTACACGACG     46
+||||.    ||      ||.|.   || ||         |||. |
+FC12044_91407      1 --TGATT----GA------AGGTAGGGTAGCA---------TACT-G---     25
+Illumina_Geno     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          27/43 (62.8%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----CAAGCAGAAGACG---GCATAC-GAGCTCTTCCGATCT     34
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG--------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||         |||. |
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      19/35 (54.3%)
+# Similarity:    19/35 (54.3%)
+# Gaps:          13/35 (37.1%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_Pair      1 -GATCGGAAG--AGCGGTTCAGCAGGAATGCCGAG     32
+||| .||||  || |||  |||    ||.|.|
+FC12044_91407      1 TGAT-TGAAGGTAG-GGT--AGC----ATACTG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||         |||. |
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATC---TA-CACTCTTTCCCTACACGACG     46
+||||.    ||      ||.|.   || ||         |||. |
+FC12044_91407      1 --TGATT----GA------AGGTAGGGTAGCA---------TACT-G---     25
+Illumina_Pair     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          38/62 (61.3%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGA-AGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG     49
+.|| .||.||  || |     |||   .||||. |||
+FC12044_91407      1 -----TGATTGAAGG--TA-G-----GGT---AGCATA-CTG--------     25
+Illumina_Pair     50 CTCTTCCGATCT     61
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||         |||. |
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      10/49 (20.4%)
+# Similarity:    10/49 (20.4%)
+# Gaps:          36/49 (73.5%)
+# Score: 38.0
+#
+#
+#=======================================
+Illumina_Pair      1 ------------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+.|||   .||||. |||
+FC12044_91407      1 TGATTGAAGGTAGGGT---AGCATA-CTG--------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          11/31 (35.5%)
+# Score: 49.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -----GATCGTCGGACTGTAGAACTCTGAAC     26
+||..||.||   ||||.|..|||
+FC12044_91407      1 TGATTGAAGGTAGG---GTAGCATACTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------ACAGGTTCAGAGTT-C-TACAGTCCGAC     26
+| ||||  ||.||. | |||.|
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -------TCGTATGCCGT--C-TTCTGCTTG     21
+..|||.|  ||  | |.|||
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+||||.    ||        ||||  ||.||. | |||.|
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTT-C-TACAGTCCGACGATC     32
+.|| ||||  ||.||. | |||.|
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------TCGGACTGTAGAACTCTGAAC     21
+|.||   ||||.|..|||
+FC12044_91407      1 TGATTGAAGGTAGG---GTAGCATACTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ------ACAGGTTCAGAGTT-C-TACAGTCCGACATG     29
+| ||||  ||.||. | |||.|
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          16/32 (50.0%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----CAAGCAGAAGACG---GCATAC-GANN     23
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -------TCGTATGCCGT--C-TTCTGCTTG     21
+..|||.|  ||  | |.|||
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+||||.    ||        ||||  ||.||. | |||.|
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 46.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----CCGACAGGTTCAGAGTT-C-TACAGTCCGACATG     32
+|| ||||  ||.||. | |||.|
+FC12044_91407      1 TGATT--GA-AGGT--AGGGTAGCATACTG---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_Smal      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      11/37 (29.7%)
+# Similarity:    11/37 (29.7%)
+# Gaps:          23/37 (62.2%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 ---------GTTCAGAGTT-C-TACAGTCCGACGATC     26
+||  ||.||. | |||.|
+FC12044_91407      1 TGATTGAAGGT--AGGGTAGCATACTG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          17/32 (53.1%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_Smal      1 -------TCGTATGCCGT--C-TTCTGCTTGT     22
+..|||.|  ||  | |.|||
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_Smal      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+.|||  |.||  |   |||||| |
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+||||.    ||        ||||  ||.||. | |||.|
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----CGACAGGTTCAGAGTT-C-TACAGTCCGACGATC     32
+.|| ||||  ||.||. | |||.|
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTAT---GCCG-----TCTTCTGCTTG     33
+||||..||   ||.|     .|  |||
+FC12044_91407      1 ----------GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+||   |||.||              ||
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCA------CCGAGATCTACACTCTTTCCCTACACGA     44
+|| .|||      |.|||.   |.|       |||.
+FC12044_91407      1 ---------GC-TCCAATAGCGCAGAGG---AAA-------CCTG-----     25
+Illumina_Geno     45 CGCTCTTCCGATCT     58
+FC12044_91407     26 --------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          27/43 (62.8%)
+# Score: 58.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----CAA----GCAGAAGACGGCATACGAGCTCTTCCGATCT-     34
+|||    |||||.|     |.||             ||
+FC12044_91407      1 GCTCCAATAGCGCAGAGG-----AAAC-------------CTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+||   |||.||              ||
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      20/33 (60.6%)
+# Similarity:    20/33 (60.6%)
+# Gaps:           9/33 (27.3%)
+# Score: 68.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCC-GAG     32
+|.|| .||.||||   ||| |||||. || |
+FC12044_91407      1 GCTC-CAATAGCG---CAG-AGGAAA-CCTG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+||   |||.||              ||
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCA------CCGAGATCTACACTCTTTCCCTACACGA     44
+|| .|||      |.|||.   |.|       |||.
+FC12044_91407      1 ---------GC-TCCAATAGCGCAGAGG---AAA-------CCTG-----     25
+Illumina_Pair     45 CGCTCTTCCGATCT     58
+FC12044_91407     26 --------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      14/69 (20.3%)
+# Similarity:    14/69 (20.3%)
+# Gaps:          52/69 (75.4%)
+# Score: 64.0
+#
+#
+#=======================================
+Illumina_Pair      1 ----CAA----GCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGC     42
+|||    |||||.|                        |..||||
+FC12044_91407      1 GCTCCAATAGCGCAGAGG------------------------AAACCTG-     25
+Illumina_Pair     43 TGAACCGCTCTTCCGATCT     61
+FC12044_91407     26 -------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+||   |||.||              ||
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      16/44 (36.4%)
+# Similarity:    16/44 (36.4%)
+# Gaps:          26/44 (59.1%)
+# Score: 61.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATT--CCTGCTG----AACC-GCTCTTCCGATCT     37
+|  |||  ||.|  |  ||.|    |||| |
+FC12044_91407      1 -G--CTC--CAATAGC--GCAGAGGAAACCTG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAG---------AACTCTGAAC     26
+|.||      |..|||         ||| |||
+FC12044_91407      1 GCTC------CAATAGCGCAGAGGAAAC-CTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      12/35 (34.3%)
+# Similarity:    12/35 (34.3%)
+# Gaps:          19/35 (54.3%)
+# Score: 31.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------ACAG-GTTCAGAG--TTCTACAGTCCGAC     26
+|.|| |  |||||  ..|  |.|
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --TCGTAT---GCCG-----TCTTCTGCTTG     21
+||..||   ||.|     .|  |||
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+. |.||.|.|| |  |||||  ..|  |.|
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          21/39 (53.8%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CGACAG-GTTCAGAG--TTCTACAGTCCGACGATC     32
+|.|.|| |  |||||  ..|  |.|
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --TCGGACTGTAG---------AACTCTGAAC     21
+||   |..|||         ||| |||
+FC12044_91407      1 GCTC---CAATAGCGCAGAGGAAAC-CTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      12/38 (31.6%)
+# Similarity:    12/38 (31.6%)
+# Gaps:          22/38 (57.9%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTC-CG--------ACATG     29
+|  ||.||.|. ||        ||.||
+FC12044_91407      1 -----------G--CTCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      12/34 (35.3%)
+# Similarity:    12/34 (35.3%)
+# Gaps:          20/34 (58.8%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----CAA----GCAGAAGA---CGGCATACGANN     23
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_NlaI      1 --TCGTAT---GCCG-----TCTTCTGCTTG     21
+||..||   ||.|     .|  |||
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+. |.||.|.|| |  |||||  ..|  |.|
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          15/36 (41.7%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CCGACAG-GTTCAGAGTTCTACAGTCCGACATG     32
+||.|.|| |  |||||.     |..||    ||
+FC12044_91407      1 GCTCCAATAGCG--CAGAGG-----AAACC----TG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       9/39 (23.1%)
+# Similarity:     9/39 (23.1%)
+# Gaps:          27/39 (69.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGA---CG-------ATC---     26
+.|  |||.|   ||       |.|
+FC12044_91407      1 ------------GC--TCCAATAGCGCAGAGGAAACCTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          17/32 (53.1%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_Smal      1 --TCGTAT---GCCG-----TCTTCTGCTTGT     22
+||..||   ||.|     .|  |||
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+|||    |||||.||   |.|
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+. |.||.|.|| |  |||||  ..|  |.|
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          21/39 (53.8%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----CGACAG-GTTCAGAG--TTCTACAGTCCGACGATC     32
+|.|.|| |  |||||  ..|  |.|
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       8/50 (16.0%)
+# Similarity:     8/50 (16.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG-----------------     33
+|    |||||||
+FC12044_91407      1 ---------------------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+||| |||..|| .||
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      10/70 (14.3%)
+# Similarity:    10/70 (14.3%)
+# Gaps:          57/70 (81.4%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-C     49
+||| |
+FC12044_91407      1 ---------------------------------------------GCTGC      5
+Illumina_Geno     50 TTCCGA-TCT----------     58
+||..|| .||
+FC12044_91407      6 TTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          27/43 (62.8%)
+# Score: 47.0
+#
+#
+#=======================================
+Illumina_Geno      1 ----C-----AAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+|     |.||.||    ||||.  |||
+FC12044_91407      1 GCTGCTTGGGAGGCTGA----GGCAG--GAG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+||| |||..|| .||
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Pair      1 ---GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+|.|.||.|| ||.|.  .||||||.
+FC12044_91407      1 GCTGCTTGGGAG-GCTGA--GGCAGGAG-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+||| |||..|| .||
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      10/70 (14.3%)
+# Similarity:    10/70 (14.3%)
+# Gaps:          57/70 (81.4%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-C     49
+||| |
+FC12044_91407      1 ---------------------------------------------GCTGC      5
+Illumina_Pair     50 TTCCGA-TCT----------     58
+||..|| .||
+FC12044_91407      6 TTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      13/70 (18.6%)
+# Similarity:    13/70 (18.6%)
+# Gaps:          54/70 (77.1%)
+# Score: 47.0
+#
+#
+#=======================================
+Illumina_Pair      1 ----C-----AAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTG     41
+|     |.||.||    ||||.  |||
+FC12044_91407      1 GCTGCTTGGGAGGCTGA----GGCAG--GAG-------------------     25
+Illumina_Pair     42 CTGAACCGCTCTTCCGATCT     61
+FC12044_91407     26 --------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+||| |||..|| .||
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      13/45 (28.9%)
+# Similarity:    13/45 (28.9%)
+# Gaps:          28/45 (62.2%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCT---GAACCGCTCTTCCGA-TCT----     37
+.   |||||   ||.  |||     || .|.
+FC12044_91407      1 ----------G---CTGCTTGGGAG--GCT-----GAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      10/39 (25.6%)
+# Similarity:    10/39 (25.6%)
+# Gaps:          27/39 (69.2%)
+# Score: 40.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACT-------CTGA-AC-----     26
+.|||     ||       |||| .|
+FC12044_91407      1 ---------GCTG-----CTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTT------CAGAGTTCTACAGTCCGAC     26
+.|.|.||      |.|||    .|||   ||.
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCTTG-----------------     21
+|    |||||||
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|.|.|      ||| ||     |.||||   ||
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+Illumina_DpnI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 40.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -CGAC-----AGGTTCAGAGTTCTACAGTCCGACGATC     32
+|..|     |||  |.|||    .|||   || |
+FC12044_91407      1 GCTGCTTGGGAGG--CTGAG----GCAG---GA-G---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 40.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAACT-------CTGA-AC-----     21
+.|||     ||       |||| .|
+FC12044_91407      1 ----GCTG-----CTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          16/35 (45.7%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTT------CAGAGTTCTACAGTCCGACATG     29
+.|.|.||      |.|||    .|||   ||   |
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GA---G     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          28/38 (73.7%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------------C--AAGCAGAAGACGGCATACGANN     23
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCTTG-----------------     21
+|    |||||||
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|.|.|      ||| ||     |.||||   ||
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+Illumina_NlaI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      14/38 (36.8%)
+# Similarity:    14/38 (36.8%)
+# Gaps:          19/38 (50.0%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTT------CAGAGTTCTACAGTCCGACATG     32
+.|.|.||      |.|||    .|||   ||   |
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGAG----GCAG---GA---G     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------------C--AAGCAGAAGACGGCATACGA     21
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---G-TT------CAGAGTTCTACAGTCCGACGATC     26
+| ||      |.|||    .|||   || |
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GA-G---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       9/38 (23.7%)
+# Similarity:     9/38 (23.7%)
+# Gaps:          29/38 (76.3%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCCGTCTTCTGCTTG------T----------     22
+|    |||||||      |
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------------C--AAGCAGAAGACGGCATACGA     21
+|  |.||||.||
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|.|.|      ||| ||     |.||||   ||
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+Illumina_Smal     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 40.0
+#
+#
+#=======================================
+Illumina_Smal      1 -CGAC-----AGGTTCAGAGTTCTACAGTCCGACGATC     32
+|..|     |||  |.|||    .|||   || |
+FC12044_91407      1 GCTGCTTGGGAGG--CTGAG----GCAG---GA-G---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          26/42 (61.9%)
+# Score: 52.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGT---ATGC------CGTCTTCTGCTTG     33
+|||.||  |   ||.|      ||.||
+FC12044_91407      1 -------AGACCT--TTGGATACAATGAACGACT--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_Geno      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+||   ||||      |||     ||||  ||
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          49/66 (74.2%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TAC-----AC     42
+||| |      ||||      |||     ||
+FC12044_91407      1 -------------------AGA-C------CTTT---GGATACAATGAAC     21
+Illumina_Geno     43 GACGCTCTTCCGATCT     58
+||  ||
+FC12044_91407     22 GA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      17/41 (41.5%)
+# Similarity:    17/41 (41.5%)
+# Gaps:          23/41 (56.1%)
+# Score: 63.0
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGAC----GGCATAC---GAGCTCTTCCGATCT     34
+||||    || ||||   ||.      ||| ||
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAA------CGA-CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_Geno      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+||   ||||      |||     ||||  ||
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          17/37 (45.9%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGC----GGTTCAGCAGGAATGCCGAG-     32
+|||.|    |.|.||  |.|||   |||.
+FC12044_91407      1 -------AGACCTTTGGATACA--ATGAA---CGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_Pair      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+||   ||||      |||     ||||  ||
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          49/66 (74.2%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TAC-----AC     42
+||| |      ||||      |||     ||
+FC12044_91407      1 -------------------AGA-C------CTTT---GGATACAATGAAC     21
+Illumina_Pair     43 GACGCTCTTCCGATCT     58
+||  ||
+FC12044_91407     22 GA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          46/66 (69.7%)
+# Score: 74.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGAC----GGCATACGA-GATCGGTCTCGGCATTCCTGCTGA     45
+||||    || ||||.| ||.| |.||
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAAC-GACT---------------     25
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+FC12044_91407     26 ----------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_Pair      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+||   ||||      |||     ||||  ||
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      12/45 (26.7%)
+# Similarity:    12/45 (26.7%)
+# Gaps:          28/45 (62.2%)
+# Score: 52.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCC------TGC--TGAACCGCTCTTCCGATCT     37
+|..||      |.|  |||||..||
+FC12044_91407      1 ----------AGACCTTTGGATACAATGAACGACT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          13/32 (40.6%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGA-CTGTAGA-ACTCTGAAC----     26
+.|| ||.|.|| ||..|||||
+FC12044_91407      1 -------AGACCTTTGGATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTC-------TACA--GTCCGAC-     26
+|||   |       ||||  |..||||
+FC12044_91407      1 --------AGA---CCTTTGGATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+||||    || ||||.|
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------TCGTATGC------CGTCTTCTGCTTG     21
+|.|.||.|      ||.||
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+||||    || ||||.|
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+. ||||         ||..||    ||||  |..|||
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTC-------TACAGTCCG-ACGATC-     32
+|||   |       ||||.|  | |||| |
+FC12044_91407      1 ----------AGA---CCTTTGGATACAAT--GAACGA-CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGA-CTGTAGA-ACTCTGAAC----     21
+.|| ||.|.|| ||..|||||
+FC12044_91407      1 --AGACCTTTGGATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      13/38 (34.2%)
+# Similarity:    13/38 (34.2%)
+# Gaps:          22/38 (57.9%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTC-------TACA--GTCCGACATG     29
+|||   |       ||||  |..||||.
+FC12044_91407      1 --------AGA---CCTTTGGATACAATGAACGACT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 46.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGAC----GGCATACGANN-------     23
+||||    || ||||.|..
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ------TCGTATGC------CGTCTTCTGCTTG     21
+|.|.||.|      ||.||
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+||||    || ||||.|
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+. ||||         ||..||    ||||  |..|||
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          17/37 (45.9%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CCGACAGGTTCAGAGTTCTACA--GTCCGACATG     32
+||      ||..||    ||||  |..||||.
+FC12044_91407      1 AGACC------TTTGGA----TACAATGAACGACT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGAC----GGCATACGA---------     21
+||||    || ||||.|
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTC-------TACAGTCCG-ACGATC-     26
+|||   |       ||||.|  | |||| |
+FC12044_91407      1 ----AGA---CCTTTGGATACAAT--GAACGA-CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          21/34 (61.8%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_Smal      1 ------TCGTATGC------CGTCTTCTGCTTGT     22
+|.|.||.|      ||.||
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGAC----GGCATACGA---------     21
+||||    || ||||.|
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+. ||||         ||..||    ||||  |..|||
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTC-------TACAGTCCG-ACGATC-     32
+|||   |       ||||.|  | |||| |
+FC12044_91407      1 ----------AGA---CCTTTGGATACAAT--GAACGA-CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          30/44 (68.2%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+||   |.||.||     |||||
+FC12044_91407      1 AGGGAATTTTAGA---GGAGGGC-----TGCCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+|     |||   ||.|.|| |..||.|||
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      15/62 (24.2%)
+# Similarity:    15/62 (24.2%)
+# Gaps:          41/62 (66.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+|||..||  |.|      |||..||.|              ||
+FC12044_91407      1 AGGGAATTTTA--GAG------GAGGGCTGC--------------CG---     25
+Illumina_Geno     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          19/39 (48.7%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCAT-----ACGAGCTCTTCCGATCT     34
+||  ||.||     |.|||..||.|||
+FC12044_91407      1 --------AG--GGAATTTTAGAGGAGGGCTGCCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+|     |||   ||.|.|| |..||.|||
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 61.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGG---TTCAGCAGGAA---TGCCGAG     32
+|| ||   ||.|| ||||.   |||||
+FC12044_91407      1 ---------AG-GGAATTTTAG-AGGAGGGCTGCCG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+|     |||   ||.|.|| |..||.|||
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      15/62 (24.2%)
+# Similarity:    15/62 (24.2%)
+# Gaps:          41/62 (66.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Pair      1 ----AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+|||..||  |.|      |||..||.|              ||
+FC12044_91407      1 AGGGAATTTTA--GAG------GAGGGCTGC--------------CG---     25
+Illumina_Pair     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      20/61 (32.8%)
+# Similarity:    20/61 (32.8%)
+# Gaps:          36/61 (59.0%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+||  ||.||...|||  ||.   ||       ||||  |||
+FC12044_91407      1 --------AG--GGAATTTTAGA--GGA---GG-------GCTG--CCG-     25
+Illumina_Pair     51 TCTTCCGATCT     61
+FC12044_91407     26 -----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+|     |||   ||.|.|| |..||.|||
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      14/46 (30.4%)
+# Similarity:    14/46 (30.4%)
+# Gaps:          30/46 (65.2%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCT---------GCTGAACCGCTCTTCCGATCT     37
+.|    ||.|||  |         ||||  |||
+FC12044_91407      1 -AG----GGAATT--TTAGAGGAGGGCTG--CCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:       9/41 (22.0%)
+# Similarity:     9/41 (22.0%)
+# Gaps:          31/41 (75.6%)
+# Score: 28.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --------------GATCGTCGGACTGTAGAACTCTGAAC-     26
+||     ||.|||     |      |
+FC12044_91407      1 AGGGAATTTTAGAGGA-----GGGCTG-----C------CG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTA--------CAGTCCGAC     26
+|||    ||.||.||        |.| |||
+FC12044_91407      1 --AGG----GAATTTTAGAGGAGGGCTG-CCG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAG-------CAGAAGACGGCATACGA     21
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --------TCGTA---------TGCCGTCTTCTGCTTG     21
+|  ||         |||||
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAG-------CAGAAGACGGCATACGA     21
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+|||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+Illumina_DpnI     43 GA     44
+|
+FC12044_91407     25 G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTA--------CAGTCCGACGATC     32
+|||    ||.||.||        |.| |||
+FC12044_91407      1 ----AGG----GAATTTTAGAGGAGGGCTG-CCG------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 22.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ------TCGGACTGTAGA-----ACT-CTGAAC-     21
+|     |.||||     .|| |    |
+FC12044_91407      1 AGGGAAT-----TTTAGAGGAGGGCTGC----CG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTA--------CAGTCCGACATG     29
+|||    ||.||.||        |.| |||
+FC12044_91407      1 --AGG----GAATTTTAGAGGAGGGCTG-CCG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          12/30 (40.0%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAG-------CAGAAGACGGCATACGANN     23
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_NlaI      1 --------TCGTA---------TGCCGTCTTCTGCTTG     21
+|  ||         |||||
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAG-------CAGAAGACGGCATACGA     21
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+|||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+Illumina_NlaI     43 GA     44
+|
+FC12044_91407     25 G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTA--------CAGTCCGACATG     32
+|||    ||.||.||        |.| |||
+FC12044_91407      1 -----AGG----GAATTTTAGAGGAGGGCTG-CCG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAG-------CAGAAGACGGCATACGA     21
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCA--GAGTTCTA--------CAGTCCGACGATC     26
+|  ||.||.||        |.| |||
+FC12044_91407      1 ----AGGGAATTTTAGAGGAGGGCTG-CCG------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       8/39 (20.5%)
+# Similarity:     8/39 (20.5%)
+# Gaps:          31/39 (79.5%)
+# Score: 34.5
+#
+#
+#=======================================
+Illumina_Smal      1 --------TCGTA---------TGCCGTCTTCTGCTTGT     22
+|  ||         |||||
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAG-------CAGAAGACGGCATACGA     21
+||       .|||.||.|||...||
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+|||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+Illumina_Smal     43 GA     44
+|
+FC12044_91407     25 G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTA--------CAGTCCGACGATC     32
+|||    ||.||.||        |.| |||
+FC12044_91407      1 ----AGG----GAATTTTAGAGGAGGGCTG-CCG------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          28/43 (65.1%)
+# Score: 50.0
+#
+#
+#=======================================
+Illumina_Geno      1 ----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+|.||.|    ||| |      ||| ||
+FC12044_91407      1 TCTCCATGTTGGTCAG----GCT-G------GTC-TC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+||  |||.|     .|| |  |||     |.|||
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 65.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCT     48
+|||.|| |.||  ||        |.|||
+FC12044_91407      1 ----------------------TCTCCA-TGTTGGTC--------AGGCT     19
+Illumina_Geno     49 CTTCCGATCT-     58
+|.|||
+FC12044_91407     20 -----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      13/44 (29.5%)
+# Similarity:    13/44 (29.5%)
+# Gaps:          29/44 (65.9%)
+# Score: 53.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----CAAG-----CAGAAGACGGCATACGAGCTCTTCCGATCT-     34
+||.|     |||              |||     |.|||
+FC12044_91407      1 TCTCCATGTTGGTCAG--------------GCT-----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+||  |||.|     .|| |  |||     |.|||
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Pair      1 ----------GATCGGAAGAGC-GGT-TCAGCAGGAATGCCGAG     32
+|.||.|    || ||| ||
+FC12044_91407      1 TCTCCATGTTGGTCAG----GCTGGTCTC---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+||  |||.|     .|| |  |||     |.|||
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 65.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCT     48
+|||.|| |.||  ||        |.|||
+FC12044_91407      1 ----------------------TCTCCA-TGTTGGTC--------AGGCT     19
+Illumina_Pair     49 CTTCCGATCT-     58
+|.|||
+FC12044_91407     20 -----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      16/66 (24.2%)
+# Similarity:    16/66 (24.2%)
+# Gaps:          46/66 (69.7%)
+# Score: 81.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCAT-----TCCTGCTGA     45
+||||  |||     ||..||||.
+FC12044_91407      1 ---------------------------TCTC--CATGTTGGTCAGGCTGG     21
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+.   |||
+FC12044_91407     22 T---CTC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+||  |||.|     .|| |  |||     |.|||
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      16/42 (38.1%)
+# Similarity:    16/42 (38.1%)
+# Gaps:          22/42 (52.4%)
+# Score: 81.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCAT-----TCCTGCTGAACCGCTCTTCCGATCT     37
+||||  |||     ||..||||..   |||
+FC12044_91407      1 ---TCTC--CATGTTGGTCAGGCTGGT---CTC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 64.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -------GATCGTCGGACTGTAGAACTCTGAAC     26
+|.|.|||.|.||   |..|||
+FC12044_91407      1 TCTCCATGTTGGTCAGGCT---GGTCTC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      10/38 (26.3%)
+# Similarity:    10/38 (26.3%)
+# Gaps:          25/38 (65.8%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACA-----GTCCGAC-------     26
+|||.||     |||.|.|
+FC12044_91407      1 -------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------------CAAGCAGAAGACGGCATACGA     21
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 46.0
+#
+#
+#=======================================
+Illumina_DpnI      1 --TC---GTATG--CCGTCT--TCTGCTTG     21
+||   || ||  |.|.||  ||| |
+FC12044_91407      1 TCTCCATGT-TGGTCAGGCTGGTCT-C---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------------CAAGCAGAAGACGGCATACGA     21
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+. |.||      |.||||  |.|.  ||| |
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 64.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--     32
+|||.||     |||.|.| |.||
+FC12044_91407      1 ---------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_NlaI      1 --TCGGAC-TGTAGAACT--CTGAAC--     21
+||   | |||.|..|.  |||..|
+FC12044_91407      1 TCTC---CATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          24/39 (61.5%)
+# Score: 56.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACA-----GTCCGACATG-----     29
+|||.||     |||.|.| ||
+FC12044_91407      1 -------------TCTCCATGTTGGTCAGGC-TGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          24/36 (66.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCATACGANN     23
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 46.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --TC---GTATG--CCGTCT--TCTGCTTG     21
+||   || ||  |.|.||  ||| |
+FC12044_91407      1 TCTCCATGT-TGGTCAGGCTGGTCT-C---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCATACGA     21
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+. |.||      |.||||  |.|.  ||| |
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CC------GACAGGTTCAGAGTTCTACAGTCCGACATG     32
+||      |.||||  |.|.  ||| |
+FC12044_91407      1 TCTCCATGTTGGTCAGG--CTGG--TCT-C-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------------CAAGCAGAAGACGGCATACGA     21
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      13/34 (38.2%)
+# Similarity:    13/34 (38.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 64.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACA-----GTCCGAC-GATC--     26
+|||.||     |||.|.| |.||
+FC12044_91407      1 ---------TCTCCATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          11/29 (37.9%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCCGTCT---TCT-GCTTGT---     22
+|| |   ||.|.|   ||. |||.||
+FC12044_91407      1 TC-T---CCATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------------CAAGCAGAAGACGGCATACGA     21
+||.||.|  |.|     .|
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+. |.||      |.||||  |.|.  ||| |
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 64.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--     32
+|||.||     |||.|.| |.||
+FC12044_91407      1 ---------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_Geno      1 -GA---TCGGAAGAGCTCGTATG--CCGTCTTCTGCTTG     33
+||   |||  |||   ||.|.|  |||.|
+FC12044_91407      1 TGAACGTCG--AGA---CGCAAGGCCCGCC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+|..||     |||||.   |  |||. |
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      13/68 (19.1%)
+# Similarity:    13/68 (19.1%)
+# Gaps:          53/68 (77.9%)
+# Score: 70.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTAC     40
+||| |||.|||          ||.||
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+Illumina_Geno     41 ACGACGCTCTTCCGATCT     58
+FC12044_91407     26 ------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          17/38 (44.7%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAA-GACGGCATACG---AGCTCTTCCGATCT     34
+.||| |.||  |.|||   .||    |||. |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGC----CCGC-C-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+|..||     |||||.   |  |||. |
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          15/36 (41.7%)
+# Score: 56.0
+#
+#
+#=======================================
+Illumina_Pair      1 -GA---TCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+||   |||  ||| ||   ||  |||...|||
+FC12044_91407      1 TGAACGTCG--AGA-CG---CA--AGGCCCGCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+|..||     |||||.   |  |||. |
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      13/68 (19.1%)
+# Similarity:    13/68 (19.1%)
+# Gaps:          53/68 (77.9%)
+# Score: 70.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTAC     40
+||| |||.|||          ||.||
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+Illumina_Pair     41 ACGACGCTCTTCCGATCT     58
+FC12044_91407     26 ------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      21/61 (34.4%)
+# Similarity:    21/61 (34.4%)
+# Gaps:          36/61 (59.0%)
+# Score: 85.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+.||  |||    .||||| ||  |..|||            ||||
+FC12044_91407      1 -----TGA--ACG----TCGAGA-CG--CAAGGC------------CCGC     24
+Illumina_Pair     51 TCTTCCGATCT     61
+|
+FC12044_91407     25 -C---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+|..||     |||||.   |  |||. |
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      15/45 (33.3%)
+# Similarity:    15/45 (33.3%)
+# Gaps:          28/45 (62.2%)
+# Score: 61.0
+#
+#
+#=======================================
+Illumina_Pair      1 ----CGGTCTCG----GCATTCCTGCTGAACCGCTCTTCCGATCT     37
+||   |||    |||.   .||    |||| |
+FC12044_91407      1 TGAACG---TCGAGACGCAA---GGC----CCGC-C---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -GATCGTCGGACTGTAGAACTCTGAAC-----     26
+||.|||||      || ||.|....|
+FC12044_91407      1 TGAACGTCG------AG-ACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:          11/31 (35.5%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ---ACAGGTTCAGAGTTCTACA--GTCCGAC     26
+||.   || ||| .| .||  |.|||.|
+FC12044_91407      1 TGAACG---TC-GAG-AC-GCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+.||| |.||  |.||| |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ------TCGT-----ATG--CCGTCTTCTGCTTG     21
+|||.     |.|  |||.|
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+.||| |.||  |.||| |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+||| |||.|  ||| ||    |||.|
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+Illumina_DpnI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 54.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTTCTAC---AGTCCGACGATC-     32
+||.|       |||    ||   ||.||  ||  |
+FC12044_91407      1 TGAACGTC-------GAG----ACGCAAGGCC--CG--CC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      10/35 (28.6%)
+# Similarity:    10/35 (28.6%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAAC-TCTGA-AC------------     21
+.|||| || || ||
+FC12044_91407      1 ---------TGAACGTC-GAGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      15/34 (44.1%)
+# Similarity:    15/34 (44.1%)
+# Gaps:          14/34 (41.2%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---ACAGGTTCAGAGTTCTACA--GTCCGACATG     29
+||.   || ||| .| .||  |.|||.|
+FC12044_91407      1 TGAACG---TC-GAG-AC-GCAAGGCCCGCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -------CAA---GCAGAAGACGGCATACGANN     23
+|.|   ||| |.|.|.||   |
+FC12044_91407      1 TGAACGTCGAGACGCA-AGGCCCGC---C----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ------TCGT-----ATG--CCGTCTTCTGCTTG     21
+|||.     |.|  |||.|
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+.||| |.||  |.||| |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+||| |||.|  ||| ||    |||.|
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+Illumina_NlaI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          17/37 (45.9%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CCGACAGGTTCAGAGTTCTACA--GTCCGACATG     32
+.||.|       ||| .| .||  |.|||.|
+FC12044_91407      1 TGAACGTC-------GAG-AC-GCAAGGCCCGCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAA-GACGGCATACG-A---------     21
+.||| |.||  |.||| |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Smal      1 -----GTTCAGAGTTCTAC---AGTCCGACGATC-     26
+| || |||    ||   ||.||  ||  |
+FC12044_91407      1 TGAACG-TC-GAG----ACGCAAGGCC--CG--CC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          23/35 (65.7%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_Smal      1 ------TCGT-----ATG--CCGTCTTCTGCTTGT     22
+|||.     |.|  |||.|
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAA-GACGGCATACG-A---------     21
+.||| |.||  |.||| |
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+||| |||.|  ||| ||    |||.|
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+Illumina_Smal     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 54.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----CGACAGGTTCAGAGTTCTAC---AGTCCGACGATC-     32
+||.|       |||    ||   ||.||  ||  |
+FC12044_91407      1 TGAACGTC-------GAG----ACGCAAGGCC--CG--CC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          30/44 (68.2%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+|  |||..|.||              |||   |
+FC12044_91407      1 CTGTCCCCACGG--CGGGGGGGC--------------CTG---G     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+||.||||  ||||.|      ||         ||
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      15/66 (22.7%)
+# Similarity:    15/66 (22.7%)
+# Gaps:          49/66 (74.2%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC-----     45
+||.||||  ||||.|
+FC12044_91407      1 ------------------------------CTGTCCC--CACGGCGGGGG     18
+Illumina_Geno     46 -GCTCTTCCGATCT--     58
+||         ||
+FC12044_91407     19 GGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      12/42 (28.6%)
+# Similarity:    12/42 (28.6%)
+# Gaps:          25/42 (59.5%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_Geno      1 ------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT--     34
+|   |     |||||....|.||         ||
+FC12044_91407      1 CTGTCCC---C-----ACGGCGGGGGGGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+||.||||  ||||.|      ||         ||
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          15/36 (41.7%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGT----TCAGCAGGAATGCCGAG     32
+|.||    .|.||.||...|||..|
+FC12044_91407      1 -----------CTGTCCCCACGGCGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+||.||||  ||||.|      ||         ||
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      15/66 (22.7%)
+# Similarity:    15/66 (22.7%)
+# Gaps:          49/66 (74.2%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC-----     45
+||.||||  ||||.|
+FC12044_91407      1 ------------------------------CTGTCCC--CACGGCGGGGG     18
+Illumina_Pair     46 -GCTCTTCCGATCT--     58
+||         ||
+FC12044_91407     19 GGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 67
+# Identity:      17/67 (25.4%)
+# Similarity:    17/67 (25.4%)
+# Gaps:          48/67 (71.6%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_Pair      1 ------CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTG     44
+|   |     ||||    ||.|   ||    |||       |||
+FC12044_91407      1 CTGTCCC---C-----ACGG----CGGG---GG----GGC-------CTG     24
+Illumina_Pair     45 AACCGCTCTTCCGATCT     61
+.
+FC12044_91407     25 G----------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+||.||||  ||||.|      ||         ||
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      13/47 (27.7%)
+# Similarity:    13/47 (27.7%)
+# Gaps:          32/47 (68.1%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGT---CTCGGCATT-------CCTGCTGAACCGCTCTTCCGATCT     37
+|.||   |.||||          ||||  |
+FC12044_91407      1 CTGTCCCCACGGC---GGGGGGGCCTG--G-----------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 38.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATC-GT-----CGGACTGTAGAACTCTGAAC     26
+| ||     ||| |.|..|..| |||.
+FC12044_91407      1 ---CTGTCCCCACGG-CGGGGGGGC-CTGG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       7/42 (16.7%)
+# Similarity:     7/42 (16.7%)
+# Gaps:          33/42 (78.6%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTC----CGAC------------     26
+|.|||    ||.|
+FC12044_91407      1 -----------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------CA-AGCAGAAGACGGCATACGA     21
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 29.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---TCGTATGCCGTCTTCTGCTTG-----------     21
+||     ||  | .|.||  |
+FC12044_91407      1 CTGTC-----CC--C-ACGGC--GGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------CA-AGCAGAAGACGGCATACGA     21
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+| |.|| || ||.|   |.|.|      .|.||  |
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGT-CCGACGATC------------     32
+|.|| ||.|||. |
+FC12044_91407      1 -------------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      10/29 (34.5%)
+# Similarity:    10/29 (34.5%)
+# Gaps:          12/29 (41.4%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --------TCGGACTGTAGAACTCTGAAC     21
+.||| |.|..|..| |||.
+FC12044_91407      1 CTGTCCCCACGG-CGGGGGGGC-CTGG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       9/42 (21.4%)
+# Similarity:     9/42 (21.4%)
+# Gaps:          30/42 (71.4%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCC------------GACATG-     29
+|.||||            |.|.||
+FC12044_91407      1 -----------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          14/31 (45.2%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------CA-AGCAGAAGACGGCATACGANN     23
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 29.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---TCGTATGCCGTCTTCTGCTTG-----------     21
+||     ||  | .|.||  |
+FC12044_91407      1 CTGTC-----CC--C-ACGGC--GGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------CA-AGCAGAAGACGGCATACGA     21
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+| |.|| || ||.|   |.|.|      .|.||  |
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAGTCC------------GACATG-     32
+|.||||            |.|.||
+FC12044_91407      1 --------------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------CA-AGCAGAAGACGGCATACGA     21
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       9/39 (23.1%)
+# Similarity:     9/39 (23.1%)
+# Gaps:          27/39 (69.2%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAGT-CCGACGATC------------     26
+|.|| ||.|||. |
+FC12044_91407      1 -------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      10/31 (32.3%)
+# Similarity:    10/31 (32.3%)
+# Gaps:          15/31 (48.4%)
+# Score: 27.5
+#
+#
+#=======================================
+Illumina_Smal      1 ---TCGTATGCCGTCTTCTG------CTTGT     22
+||     ||..|..|.|      ||.|
+FC12044_91407      1 CTGTC-----CCCACGGCGGGGGGGCCTGG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------CA-AGCAGAAGACGGCATACGA     21
+|| .||.|..|  |||.|. |
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+| |.|| || ||.|   |.|.|      .|.||  |
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGT-CCGACGATC------------     32
+|.|| ||.|||. |
+FC12044_91407      1 -------------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          12/35 (34.3%)
+# Score: 79.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCC--GTCTTCTGCTTG     33
+||.|..|||.||..||  |.||| ||
+FC12044_91407      1 -----GATGTACTCTTACACCCAGACTT-TG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+||.||       |||||         ||...||
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 93.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+|||.|||.||       |||||
+FC12044_91407      1 --------------------GATGTACTCT-------TACAC--------     15
+Illumina_Geno     51 TCCGATCT---     58
+||...||
+FC12044_91407     16 -CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          23/41 (56.1%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTT----CCGATCT---     34
+||.|      ||    |||||    ||...||
+FC12044_91407      1 ------GATG------TA----CTCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+||.||       |||||         ||...||
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          21/39 (53.8%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTC-AGCAGGAATGCCGAG------     32
+||.|..|   || ..||      ||.||
+FC12044_91407      1 -----GATGTAC---TCTTACA------CCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+||.||       |||||         ||...||
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 93.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+|||.|||.||       |||||
+FC12044_91407      1 --------------------GATGTACTCT-------TACAC--------     15
+Illumina_Pair     51 TCCGATCT---     58
+||...||
+FC12044_91407     16 -CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      19/65 (29.2%)
+# Similarity:    19/65 (29.2%)
+# Gaps:          44/65 (67.7%)
+# Score: 69.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGT-CTCGGCATTCCTGCTGAACCG     49
+|||  || |||    ||.|      |||
+FC12044_91407      1 ---------------------GAT--GTACTC----TTAC------ACC-     16
+Illumina_Pair     50 CTCTTCCGATCT---     61
+|.|| ||
+FC12044_91407     17 -----CAGA-CTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+||.||       |||||         ||...||
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      13/44 (29.5%)
+# Similarity:    13/44 (29.5%)
+# Gaps:          26/44 (59.1%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTCTT----CCGATCT---     37
+|.||.|   |||||    ||...||
+FC12044_91407      1 ----------------GATGTA---CTCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      13/37 (35.1%)
+# Similarity:    13/37 (35.1%)
+# Gaps:          23/37 (62.2%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGA-AC----------     26
+|| |||   |||||.| ||
+FC12044_91407      1 --------GA-TGT---ACTCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          21/36 (58.3%)
+# Score: 63.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGA-GTTC---TACAGTCC--GAC----     26
+|| ||.|   ||||  ||  |||
+FC12044_91407      1 ---------GATGTACTCTTACA--CCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+||.| || .|.|||     ||
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -------TCGTATGCC--GTCTTCTGCTTG     21
+||.||..||  |.||| ||
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+||.| || .|.|||     ||
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+.||| |||    .|   ||||        ||||.|| |.
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGA-GTTC---TACAGTCC--GAC---GATC     32
+|| ||.|   ||||  ||  |||   |
+FC12044_91407      1 -----------GATGTACTCTTACA--CCCAGACTTTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          18/32 (56.2%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGA-AC----------     21
+|| |||   |||||.| ||
+FC12044_91407      1 ---GA-TGT---ACTCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          18/36 (50.0%)
+# Score: 65.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGA-GTTC---TACAGTCC--GAC-ATG     29
+|| ||.|   ||||  ||  ||| .||
+FC12044_91407      1 ---------GATGTACTCTTACA--CCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      10/35 (28.6%)
+# Similarity:    10/35 (28.6%)
+# Gaps:          22/35 (62.9%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCATAC-----------GANN     23
+||.| || .|.|||           |
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -------TCGTATGCC--GTCTTCTGCTTG     21
+||.||..||  |.||| ||
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+||.| || .|.|||     ||
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+.||| |||    .|   ||||        ||||.|| |.
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 65.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGA-GTTC---TACAGTCC--GAC-ATG     32
+|| ||.|   ||||  ||  ||| .||
+FC12044_91407      1 ------------GATGTACTCTTACA--CCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+||.| || .|.|||     ||
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---GTTCAGAGTTC-TACAGTCC--GAC---GATC     26
+||.|     || ||||  ||  |||   |
+FC12044_91407      1 GATGTAC-----TCTTACA--CCCAGACTTTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          15/31 (48.4%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_Smal      1 -------TCGTATGCC--GTCTTCTGCTTGT     22
+||.||..||  |.||| ||
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+||.| || .|.|||     ||
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+.||| |||    .|   ||||        ||||.|| |.
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGA-GTTC---TACAGTCC--GAC---GATC     32
+|| ||.|   ||||  ||  |||   |
+FC12044_91407      1 -----------GATGTACTCTTACA--CCCAGACTTTG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      14/42 (33.3%)
+# Similarity:    14/42 (33.3%)
+# Gaps:          26/42 (61.9%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATC---GGAAGA-----GCTCGTATGCC-GTCTTCTGCTTG     33
+||   ||..||     ||||     || ||
+FC12044_91407      1 --TCAAGGGTGGATCTTGGCTC-----CCAGT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||       .||||         |  ||||  ||..|
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 57.5
+#
+#
+#=======================================
+Illumina_Geno      1 --AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT     48
+||.|.|             .|||||            |.      |||
+FC12044_91407      1 TCAAGGGT-------------GGATCT------------TG------GCT     19
+Illumina_Geno     49 CTTCCGATCT     58
+|  ||..|
+FC12044_91407     20 C--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          11/35 (31.4%)
+# Score: 63.0
+#
+#
+#=======================================
+Illumina_Geno      1 -CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+|||| .|..||  .|.|   .||||  ||..|
+FC12044_91407      1 TCAAG-GGTGGA--TCTT---GGCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||       .||||         |  ||||  ||..|
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          13/35 (37.1%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCA--GCAGGAATGCCGAG-     32
+||  |||.|.||.||.  ||.      ||.||
+FC12044_91407      1 --TC--AAGGGTGGATCTTGGCT------CCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||       .||||         |  ||||  ||..|
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 57.5
+#
+#
+#=======================================
+Illumina_Pair      1 --AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT     48
+||.|.|             .|||||            |.      |||
+FC12044_91407      1 TCAAGGGT-------------GGATCT------------TG------GCT     19
+Illumina_Pair     49 CTTCCGATCT     58
+|  ||..|
+FC12044_91407     20 C--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      18/62 (29.0%)
+# Similarity:    18/62 (29.0%)
+# Gaps:          38/62 (61.3%)
+# Score: 74.0
+#
+#
+#=======================================
+Illumina_Pair      1 -CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG     49
+||||                 |.|.|.|||.|||  |||  |.|.
+FC12044_91407      1 TCAAG-----------------GGTGGATCTTGGC--TCC--CAGT----     25
+Illumina_Pair     50 CTCTTCCGATCT     61
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+.||       .||||         |  ||||  ||..|
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      19/41 (46.3%)
+# Similarity:    19/41 (46.3%)
+# Gaps:          20/41 (48.8%)
+# Score: 65.0
+#
+#
+#=======================================
+Illumina_Pair      1 -C---GGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+|   |||   || ||  ||  ||    ||||  ||..|
+FC12044_91407      1 TCAAGGGT---GG-AT--CT--TG----GCTC--CCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTC--GGACTGTAGAACT---CTGAAC-----     26
+||  ||   ||.||.||   ||   |
+FC12044_91407      1 -----TCAAGG---GTGGATCTTGGCT---CCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 58.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTC-AGAGT---TCTA------CAGTCCGAC     26
+|| ||.||   |||.      ||||
+FC12044_91407      1 ------TCAAGGGTGGATCTTGGCTCCCAGT-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+|||| .|..|| |  ||| |.|.|
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_DpnI      1 TC--GTATGCCG-TCTT--CTGCTTG-     21
+||  |..||  | ||||  ||.|..|
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+|||| .|..|| |  ||| |.|.|
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+|| ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+Illumina_DpnI     41 CCGA     44
+FC12044_91407     26 ----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTC-AGAGT---TCTA--CAGTCCGACGATC     32
+|| ||.||   |||.  |  |||  |..|
+FC12044_91407      1 --------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          16/31 (51.6%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TC--GGACTGTAGAACT---CTGAAC-----     21
+||  ||   ||.||.||   ||   |
+FC12044_91407      1 TCAAGG---GTGGATCTTGGCT---CCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          18/36 (50.0%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTC-AGAGT---TCTA--CAGTCCGACA-TG     29
+|| ||.||   |||.  |  |||  || |
+FC12044_91407      1 ------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          10/29 (34.5%)
+# Score: 38.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -CAAGCAGAAGA-C--GGCATAC--GANN     23
+|||| .|..|| |  ||| |.|  |.
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TC--GTATGCCG-TCTT--CTGCTTG-     21
+||  |..||  | ||||  ||.|..|
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+|||| .|..|| |  ||| |.|.|
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+|| ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+Illumina_NlaI     41 CCGA     44
+FC12044_91407     26 ----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTC-AGAGT---TCTA--CAGTCCGACA-TG     32
+|| ||.||   |||.  |  |||  || |
+FC12044_91407      1 ---------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_Smal      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+|||| .|..|| |  ||| |.|.|
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      15/32 (46.9%)
+# Similarity:    15/32 (46.9%)
+# Gaps:          13/32 (40.6%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTC-AGAGT---TCTA--CAGTCCGACGATC     26
+|| ||.||   |||.  |  |||  |..|
+FC12044_91407      1 --TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      15/27 (55.6%)
+# Similarity:    15/27 (55.6%)
+# Gaps:           7/27 (25.9%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_Smal      1 TC--GTATGCCG-TCTT--CTGCTTGT     22
+||  |..||  | ||||  ||.|..||
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_Smal      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+|||| .|..|| |  ||| |.|.|
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+|| ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+Illumina_Smal     41 CCGA     44
+FC12044_91407     26 ----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 60.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTC-AGAGT---TCTA--CAGTCCGACGATC     32
+|| ||.||   |||.  |  |||  |..|
+FC12044_91407      1 --------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          18/38 (47.4%)
+# Score: 63.5
+#
+#
+#=======================================
+Illumina_Geno      1 GAT--CGGAAGAGCTCGTATGCCGTCTT---CTGCTTG     33
+|  ||..|||| |  |.|||  ||||   |
+FC12044_91407      1 --TTGCGACAGAG-T--TTTGC--TCTTGTCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+||      .||||        |||||  |||
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 59
+# Identity:      20/59 (33.9%)
+# Similarity:    20/59 (33.9%)
+# Gaps:          35/59 (59.3%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTC     49
+|.  |||| ||  |||.|.|  .||||| |||
+FC12044_91407      1 -----TT--GCGA-CA--GAGTTTT--GCTCTTGTCC-------------     25
+Illumina_Geno     50 TTCCGATCT     58
+FC12044_91407     26 ---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          23/41 (56.1%)
+# Score: 69.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGA-----GCTCT--TCCGATCT     34
+..| ||.||   ||     |||||  |||
+FC12044_91407      1 -------TTG-CGACA---GAGTTTTGCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+||      .||||        |||||  |||
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          13/35 (37.1%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_Pair      1 GAT--CGGAAGAGCGGTTCAGCAGGAATG-CCGAG     32
+|  ||..|||   |||..||.  ..|| ||
+FC12044_91407      1 --TTGCGACAGA---GTTTTGCT--CTTGTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+||      .||||        |||||  |||
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 59
+# Identity:      20/59 (33.9%)
+# Similarity:    20/59 (33.9%)
+# Gaps:          35/59 (59.3%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTC     49
+|.  |||| ||  |||.|.|  .||||| |||
+FC12044_91407      1 -----TT--GCGA-CA--GAGTTTT--GCTCTTGTCC-------------     25
+Illumina_Pair     50 TTCCGATCT     58
+FC12044_91407     26 ---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 63
+# Identity:      19/63 (30.2%)
+# Similarity:    19/63 (30.2%)
+# Gaps:          40/63 (63.5%)
+# Score: 77.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+..| ||.||   |||.|           ||           ||
+FC12044_91407      1 -------TTG-CGACA---GAGTT-----------TT-----------GC     17
+Illumina_Pair     51 TCT--TCCGATCT     61
+|||  |||
+FC12044_91407     18 TCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+||      .||||        |||||  |||
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      15/46 (32.6%)
+# Similarity:    15/46 (32.6%)
+# Gaps:          30/46 (65.2%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCT--CGGCA-----TTCCTGCTGAACCGCTCT--TCCGATCT     37
+|  ||.||     ||           |||||  |||
+FC12044_91407      1 -----TTGCGACAGAGTTTT-----------GCTCTTGTCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:           7/29 (24.1%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GAT--CGTCGGACTGTAGAACTCTGAAC-     26
+|  ||.|.||.|.|.|  ||||...|
+FC12044_91407      1 --TTGCGACAGAGTTTTG--CTCTTGTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTT----CAGAGTTCTAC---AGTCCGAC     26
+||    |||||||.|.|   .||||
+FC12044_91407      1 -----TTGCGACAGAGTTTTGCTCTTGTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGC--C---GTCTT-CTGCTTG---     21
+.|||  |   ||.|| || ||||
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+|.  ||||             |||||||.|.|   .||||
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          21/39 (53.8%)
+# Score: 86.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ---CGACAG-GTT---CAGAGTTCTACAGTCCGACGATC     32
+|||||| |||   |     |||  .||||
+FC12044_91407      1 TTGCGACAGAGTTTTGC-----TCT--TGTCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      13/28 (46.4%)
+# Similarity:    13/28 (46.4%)
+# Gaps:          10/28 (35.7%)
+# Score: 49.0
+#
+#
+#=======================================
+Illumina_NlaI      1 T--CGGACTG----TAGAACTCTGAAC-     21
+|  | |||.|    |.|  ||||...|
+FC12044_91407      1 TTGC-GACAGAGTTTTG--CTCTTGTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      15/36 (41.7%)
+# Similarity:    15/36 (41.7%)
+# Gaps:          18/36 (50.0%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTT----CAGAGTTCTAC---AGTCCGACATG     29
+||    |||||||.|.|   .||||
+FC12044_91407      1 -----TTGCGACAGAGTTTTGCTCTTGTCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       9/36 (25.0%)
+# Similarity:     9/36 (25.0%)
+# Gaps:          24/36 (66.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CAAGCAGA----------AGACGGCATACGANN     23
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 56.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGC--C---GTCTT-CTGCTTG---     21
+.|||  |   ||.|| || ||||
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+|.  ||||             |||||||.|.|   .||||
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTT----CAGAGTTCTAC---AGTCCGACATG     32
+||    |||||||.|.|   .||||
+FC12044_91407      1 --------TTGCGACAGAGTTTTGCTCTTGTCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---CAAGCAGA----------AGACGGCATACGA     21
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTT----CAGAGTTCTAC---AGTCCGACGATC     26
+||    |||||||.|.|   .||||
+FC12044_91407      1 -TTGCGACAGAGTTTTGCTCTTGTCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      15/30 (50.0%)
+# Similarity:    15/30 (50.0%)
+# Gaps:          13/30 (43.3%)
+# Score: 63.5
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGC--C---GTCTT-CTGCTTGT--     22
+.|||  |   ||.|| || |||||
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---CAAGCAGA----------AGACGGCATACGA     21
+|.| ||||          .|.|  |
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+|.  ||||             |||||||.|.|   .||||
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          21/39 (53.8%)
+# Score: 86.5
+#
+#
+#=======================================
+Illumina_Smal      1 ---CGACAG-GTT---CAGAGTTCTACAGTCCGACGATC     32
+|||||| |||   |     |||  .||||
+FC12044_91407      1 TTGCGACAGAGTTTTGC-----TCT--TGTCC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAG----AGCTC---GTATGCCGTCTTCTGCTTG     33
+||   .|    |||||   | |.||||.|
+FC12044_91407      1 --TC---TGCTCCAGCTCCAAG-ACGCCGCC---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+|||. |||  ||.||.||||| | .||
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      19/60 (31.7%)
+# Similarity:    19/60 (31.7%)
+# Gaps:          37/60 (61.7%)
+# Score: 99.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCT     48
+|||.|      |||  ||.||.|||||
+FC12044_91407      1 ----------------------TCTGC------TCCAGCTCCAAGACGC-     21
+Illumina_Geno     49 CTTCCGATCT     58
+| .||
+FC12044_91407     22 C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      15/44 (34.1%)
+# Similarity:    15/44 (34.1%)
+# Gaps:          29/44 (65.9%)
+# Score: 61.5
+#
+#
+#=======================================
+Illumina_Geno      1 ------CAAGCAG----AAGACGGCATACGAGCTCTTCCGATCT     34
+|   |||    ||||| ||   ||       ||
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGAC-GC---CG-------CC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+|||. |||  ||.||.||||| | .||
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------     32
+||     .||  |.||||.      ||.||
+FC12044_91407      1 --TC-----TGC--TCCAGCT------CCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+|||. |||  ||.||.||||| | .||
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      19/60 (31.7%)
+# Similarity:    19/60 (31.7%)
+# Gaps:          37/60 (61.7%)
+# Score: 99.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCT     48
+|||.|      |||  ||.||.|||||
+FC12044_91407      1 ----------------------TCTGC------TCCAGCTCCAAGACGC-     21
+Illumina_Pair     49 CTTCCGATCT     58
+| .||
+FC12044_91407     22 C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      18/66 (27.3%)
+# Similarity:    18/66 (27.3%)
+# Gaps:          46/66 (69.7%)
+# Score: 92.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCT----GA-     45
+|||  ||  |||.|||    ||
+FC12044_91407      1 ---------------------------TCT--GC--TCCAGCTCCAAGAC     19
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+.|||| |
+FC12044_91407     20 GCCGC-C---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+|||. |||  ||.||.||||| | .||
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      18/42 (42.9%)
+# Similarity:    18/42 (42.9%)
+# Gaps:          22/42 (52.4%)
+# Score: 92.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCT----GA-ACCGCTCTTCCGATCT     37
+|||  ||  |||.|||    || .|||| |
+FC12044_91407      1 ---TCT--GC--TCCAGCTCCAAGACGCCGC-C---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATC-G-TCGGACTGTAGAACTCTGA-AC------     26
+|| | ||   |.|     |||..| ||
+FC12044_91407      1 --TCTGCTC---CAG-----CTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          19/35 (54.3%)
+# Score: 72.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAG-TCC--GAC------     26
+||.|    ||.||| |||  |||
+FC12044_91407      1 ------TCTG----CTCCAGCTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCT---TG--------     21
+||   |||  ||  |.|||   .|
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+||.|    ||.||| |||.|
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+Illumina_DpnI     45 ----     44
+FC12044_91407     22 CGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 77.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----     32
+||.|    ||.||| |||  ||||  |
+FC12044_91407      1 --------TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTG-T--AGAACTCTGA-AC------     21
+.||| |  ||  |||..| ||
+FC12044_91407      1 ----TCTGCTCCAG--CTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          20/37 (54.1%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAG-TCC--GACATG-----     29
+||.|    ||.||| |||  |||  |
+FC12044_91407      1 ------TCTG----CTCCAGCTCCAAGAC--GCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          22/35 (62.9%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ------CAAGCAG----AAGACG--GCATACGANN     23
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 51.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCT---TG--------     21
+||   |||  ||  |.|||   .|
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+||.|    ||.||| |||.|
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+Illumina_NlaI     45 ----     44
+FC12044_91407     22 CGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAG-TCC--GACATG-----     32
+||.|    ||.||| |||  |||  |
+FC12044_91407      1 ---------TCTG----CTCCAGCTCCAAGAC--GCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Smal      1 ------CAAGCAG----AAGACG--GCATACGA     21
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      16/33 (48.5%)
+# Similarity:    16/33 (48.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 77.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAG-TCC--GACGATC----     26
+||.|    ||.||| |||  ||||  |
+FC12044_91407      1 --TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          17/32 (53.1%)
+# Score: 50.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCCGTCTTCTGCT---TGT-------     22
+||   |||  ||  |.|||   .|.
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Smal      1 ------CAAGCAG----AAGACG--GCATACGA     21
+|   |||    ||||||  ||   |
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+||.|    ||.||| |||.|
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+Illumina_Smal     45 ----     44
+FC12044_91407     22 CGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 77.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----     32
+||.|    ||.||| |||  ||||  |
+FC12044_91407      1 --------TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      12/37 (32.4%)
+# Similarity:    12/37 (32.4%)
+# Gaps:          16/37 (43.2%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAA----GAGCTCGTATGCCGTCTTCTGCTTG     33
+..||||.    |.||..|.|.|.||
+FC12044_91407      1 -TACGGAGCCGCGGGCGGGAAAGGCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+|||. || ||    | ||..|.
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 69.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGC     47
+|||||.| ||.|   ||.||                  |.|.||
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-     25
+Illumina_Geno     48 TCTTCCGATCT     58
+FC12044_91407     26 -----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:       9/46 (19.6%)
+# Similarity:     9/46 (19.6%)
+# Gaps:          33/46 (71.7%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----------CAAGCAG--AAGACGGCATACGAGCTCTTCCGATCT     34
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG---------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+|||. || ||    | ||..|.
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      17/32 (53.1%)
+# Similarity:    17/32 (53.1%)
+# Gaps:           7/32 (21.9%)
+# Score: 75.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+..||||...||||    ||.||||.|.||
+FC12044_91407      1 -TACGGAGCCGCGG----GCGGGAAAGGCG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+|||. || ||    | ||..|.
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 69.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGC     47
+|||||.| ||.|   ||.||                  |.|.||
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-     25
+Illumina_Pair     48 TCTTCCGATCT     58
+FC12044_91407     26 -----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      17/64 (26.6%)
+# Similarity:    17/64 (26.6%)
+# Gaps:          42/64 (65.6%)
+# Score: 56.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAAC---     47
+|||| ||.|   |.|||       ||.|.|.
+FC12044_91407      1 ----------------TACG-GAGC---CGCGG-------GCGGGAAAGG     23
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+||
+FC12044_91407     24 CG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+|||. || ||    | ||..|.
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      11/48 (22.9%)
+# Similarity:    11/48 (22.9%)
+# Gaps:          34/48 (70.8%)
+# Score: 45.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTCTT---C--------CGATCT     37
+|.|.||.||||       |        ||
+FC12044_91407      1 ---------------TACGGAGCCGC----GGGCGGGAAAGGCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 35.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----GAT-CGTCGGACTGTAGAACTCTGAA---C-     26
+||. || |||.|.|         |||   |
+FC12044_91407      1 TACGGAGCCG-CGGGCGG---------GAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       9/40 (22.5%)
+# Similarity:     9/40 (22.5%)
+# Gaps:          29/40 (72.5%)
+# Score: 44.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTCCGAC--------------     26
+|.|.|||         ||| |
+FC12044_91407      1 -----TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -TCGTATGCCGTCTTC-TGCTTG---------     21
+.||.| ||||    | .||  |
+FC12044_91407      1 TACGGA-GCCG----CGGGC--GGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+|||||.| ||.|.|.|.||   |.||       |  ||
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      11/42 (26.2%)
+# Similarity:    11/42 (26.2%)
+# Gaps:          27/42 (64.3%)
+# Score: 52.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGTCCGACGATC----------     32
+|.|.|||         ||| ||..|
+FC12044_91407      1 -------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGGA-CTGTAGAACTCTGAAC----------     21
+.|||| |       |.| |..|
+FC12044_91407      1 TACGGAGC-------CGC-GGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      10/40 (25.0%)
+# Similarity:    10/40 (25.0%)
+# Gaps:          26/40 (65.0%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-----------     29
+|.|.|||         ||| |..|
+FC12044_91407      1 -----TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          22/35 (62.9%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------CAAGCAG--AAGACGGCATACGANN     23
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGTATGCCGTCTTC-TGCTTG---------     21
+.||.| ||||    | .||  |
+FC12044_91407      1 TACGGA-GCCG----CGGGC--GGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+|||||.| ||.|.|.|.||   |.||       |  ||
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      10/43 (23.3%)
+# Similarity:    10/43 (23.3%)
+# Gaps:          29/43 (67.4%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAGTCCGACATG-----------     32
+|.|.|||         ||| |..|
+FC12044_91407      1 --------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------CAAGCAG--AAGACGGCATACGA     21
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 52.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGACGATC----------     26
+|.|.|||         ||| ||..|
+FC12044_91407      1 -TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      11/30 (36.7%)
+# Similarity:    11/30 (36.7%)
+# Gaps:          13/30 (43.3%)
+# Score: 28.5
+#
+#
+#=======================================
+Illumina_Smal      1 -TCGTATGCCGTCTTC-TGCTTGT------     22
+.||.| ||||    | .||..|.
+FC12044_91407      1 TACGGA-GCCG----CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------CAAGCAG--AAGACGGCATACGA     21
+|..||.|  |||.||
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+|||||.| ||.|.|.|.||   |.||       |  ||
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      11/42 (26.2%)
+# Similarity:    11/42 (26.2%)
+# Gaps:          27/42 (64.3%)
+# Score: 52.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGTCCGACGATC----------     32
+|.|.|||         ||| ||..|
+FC12044_91407      1 -------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_Geno      1 --------GATCGGAAGAGCTCG--TATGCCGTCTTCTGCTTG     33
+|.||  |||    ||  ||| || |
+FC12044_91407      1 CCTCCCAGGTTC--AAG----CGATTAT-CC-T----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+| |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      18/64 (28.1%)
+# Similarity:    18/64 (28.1%)
+# Gaps:          45/64 (70.3%)
+# Score: 73.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TACA--CGAC     45
+||               ||||   |.||  |||
+FC12044_91407      1 ----------------CC---------------TCCCAGGTTCAAGCGA-     18
+Illumina_Geno     46 GCTCTTCCGAT-CT     58
+||   || ||
+FC12044_91407     19 ----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      13/46 (28.3%)
+# Similarity:    13/46 (28.3%)
+# Gaps:          33/46 (71.7%)
+# Score: 61.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTC-----TTC---CGAT----CT     34
+|   |||     |||   ||||    ||
+FC12044_91407      1 ------------------C---CTCCCAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+| |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 55.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGC------GGTTC-AGCAGGAATG-CCGAG     32
+|      ||||| |||  ||.|. ||.
+FC12044_91407      1 -----------CCTCCCAGGTTCAAGC--GATTATCCT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+| |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      18/64 (28.1%)
+# Similarity:    18/64 (28.1%)
+# Gaps:          45/64 (70.3%)
+# Score: 73.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TACA--CGAC     45
+||               ||||   |.||  |||
+FC12044_91407      1 ----------------CC---------------TCCCAGGTTCAAGCGA-     18
+Illumina_Pair     46 GCTCTTCCGAT-CT     58
+||   || ||
+FC12044_91407     19 ----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      15/71 (21.1%)
+# Similarity:    15/71 (21.1%)
+# Gaps:          56/71 (78.9%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+|||      ||
+FC12044_91407      1 -------------------------------------CCT------CC--      5
+Illumina_Pair     51 TC---TTC---CGAT----CT     61
+|   |||   ||||    ||
+FC12044_91407      6 -CAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+| |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          32/47 (68.1%)
+# Score: 70.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTC---TTC---CGAT----CT     37
+|||      ||   |   |||   ||||    ||
+FC12044_91407      1 -------------CCT------CC---CAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       7/42 (16.7%)
+# Similarity:     7/42 (16.7%)
+# Gaps:          33/42 (78.6%)
+# Score: 32.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------------GATCGTCGGACTGTAGAACTCTGAAC     26
+|||..||   ||
+FC12044_91407      1 CCTCCCAGGTTCAAGCGATTATC---CT--------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      16/31 (51.6%)
+# Similarity:    16/31 (51.6%)
+# Gaps:          11/31 (35.5%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----ACAGGTTC-AGAGTTCTACAGTCCGAC     26
+.||||||| ||.|.| ||   |||.
+FC12044_91407      1 CCTCCCAGGTTCAAGCGAT-TA---TCCT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+|   ||      ||  ||..|||
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGCCGTC-----TTC-TGC--TTG----     21
+|| ||     ||| .||  ||.
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+|   ||      ||  ||..|||
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+||.||  ||||||| ||.|.| ||   |||.
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--     32
+|  |||||||| ||          |||..|||
+FC12044_91407      1 CCTCC--CAGGTTCA-AG----------CGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:       8/31 (25.8%)
+# Similarity:     8/31 (25.8%)
+# Gaps:          16/31 (51.6%)
+# Score: 31.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------TCGGACTGTAGAACTCTGAAC     21
+||...| |...|.| ||
+FC12044_91407      1 CCTCCCAGGTTCAAGC-GATTATC-CT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          14/34 (41.2%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----ACAGGTTC-AGAGTTCTACAGTCCGACATG     29
+.||||||| ||.|.| ||   |||    |
+FC12044_91407      1 CCTCCCAGGTTCAAGCGAT-TA---TCC----T-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       7/34 (20.6%)
+# Similarity:     7/34 (20.6%)
+# Gaps:          20/34 (58.8%)
+# Score: 37.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -----------CAAGCAGAAGACGGCATACGANN     23
+|||||......|  |.
+FC12044_91407      1 CCTCCCAGGTTCAAGCGATTATC--CT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 45.5
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGCCGTC-----TTC-TGC--TTG----     21
+|| ||     ||| .||  ||.
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+|   ||      ||  ||..|||
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+||.||  ||||||| ||.|.| ||   |||.
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      19/36 (52.8%)
+# Similarity:    19/36 (52.8%)
+# Gaps:          15/36 (41.7%)
+# Score: 84.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---CCGACAGGTTC-AGAGTTCTACAGTCCGACATG     32
+||  ||||||| ||.|.| ||   |||    |
+FC12044_91407      1 CCTCC--CAGGTTCAAGCGAT-TA---TCC----T-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_Smal      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+|   ||      ||  ||..|||
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 54.5
+#
+#
+#=======================================
+Illumina_Smal      1 --------GTTCAGAGTTCTACAGTCCGACGATC--     26
+||||| ||          |||..|||
+FC12044_91407      1 CCTCCCAGGTTCA-AG----------CGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          19/33 (57.6%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCCGTC-----TTC-TGC--TTGT---     22
+|| ||     ||| .||  ||.|
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_Smal      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+|   ||      ||  ||..|||
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+||.||  ||||||| ||.|.| ||   |||.
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 76.0
+#
+#
+#=======================================
+Illumina_Smal      1 ----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--     32
+|  |||||||| ||          |||..|||
+FC12044_91407      1 CCTCC--CAGGTTCA-AG----------CGATTATCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGT-ATGCCGTCTTCTGCTTG---------     33
+|| |||.||.|  |.||  |
+FC12044_91407      1 --------------GTCATGGCGGC--CCGC--GCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Geno      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+.||     |     ||| .|.||    .||
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_Geno      1 --AATGATACGGCGACCAC-CGAGATCTACACTCTTTCCCTACACGA-CG     46
+.|||  .||||  ||.| ||.|                     || ||
+FC12044_91407      1 GTCATG--GCGGC--CCGCGCGGG---------------------GAGCG     25
+Illumina_Geno     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          29/44 (65.9%)
+# Score: 46.0
+#
+#
+#=======================================
+Illumina_Geno      1 --CAAGCAGAAGACGGCATAC--------GAGCTCTTCCGATCT     34
+|      |.|.||||   |        ||||.
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Geno      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+.||     |     ||| .|.||    .||
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTC---AGCAGGAATGCCGAG     32
+.||  |.| ||||  |   .||.||.| | ||
+FC12044_91407      1 -GTC--ATG-GCGG--CCCGCGCGGGGA-G-CG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Pair      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+.||     |     ||| .|.||    .||
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_Pair      1 --AATGATACGGCGACCAC-CGAGATCTACACTCTTTCCCTACACGA-CG     46
+.|||  .||||  ||.| ||.|                     || ||
+FC12044_91407      1 GTCATG--GCGGC--CCGCGCGGG---------------------GAGCG     25
+Illumina_Pair     47 CTCTTCCGATCT     58
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      14/70 (20.0%)
+# Similarity:    14/70 (20.0%)
+# Gaps:          54/70 (77.1%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCT---CGGCATTCCTGCTGAAC     47
+|||.   ||||            |
+FC12044_91407      1 --------------------------GTCATGGCGGC------------C     12
+Illumina_Pair     48 CGCTCTTC------CGATCT     61
+|||   .|      ||
+FC12044_91407     13 CGC---GCGGGGAGCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Pair      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+.||     |     ||| .|.||    .||
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      14/46 (30.4%)
+# Similarity:    14/46 (30.4%)
+# Gaps:          30/46 (65.2%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCT---CGGCATTCCTGCTGAACCGCTCTTC------CGATCT     37
+|||.   ||||            ||||   .|      ||
+FC12044_91407      1 --GTCATGGCGGC------------CCGC---GCGGGGAGCG----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGT--CGGACTGTAGAACTC----TGAAC-     26
+.||.|  |||.|       |.|    .||.|
+FC12044_91407      1 -GTCATGGCGGCC-------CGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTCCGAC----------     26
+|  |||..|     |.|.||| |
+FC12044_91407      1 ---G--TCATGG-----CGGCCCG-CGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_DpnI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+|      |.|.||||   |        ||
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -TCGTATGCCGTCTTCTGCTTG---------     21
+||  |||.||.|  |.||  |
+FC12044_91407      1 GTC--ATGGCGGC--CCGC--GCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_DpnI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+|      |.|.||||   |        ||
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+.|.||  ||||.|| | || |.||    |||          ||
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 45.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACA-GGTTCAGAGTTCTACAGTCCGACGATC--------     32
+|.|| ||            |.|.||| ||  |
+FC12044_91407      1 -GTCATGG------------CGGCCCG-CG--CGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 26.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ----T--CGGACTGTAGAACTC----TGAAC-     21
+|  |||.|       |.|    .||.|
+FC12044_91407      1 GTCATGGCGGCC-------CGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       5/48 (10.4%)
+# Similarity:     5/48 (10.4%)
+# Gaps:          42/48 (87.5%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-------------------     29
+|.||||
+FC12044_91407      1 -----------------------GTCATGGCGGCCCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          20/34 (58.8%)
+# Score: 35.5
+#
+#
+#=======================================
+Illumina_NlaI      1 --CAAGCAGAAGACGGC---------ATACGANN     23
+|      |.|.||||         ...||
+FC12044_91407      1 GTC------ATGGCGGCCCGCGCGGGGAGCG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGTATGCCGTCTTCTGCTTG---------     21
+||  |||.||.|  |.||  |
+FC12044_91407      1 GTC--ATGGCGGC--CCGC--GCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+|      |.|.||||   |        ||
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+.|.||  ||||.|| | || |.||    |||          ||
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -----------CCG-ACAGGTTCAGAGTTCTACAGTCCGACATG     32
+||| .|.||    |||          ||
+FC12044_91407      1 GTCATGGCGGCCCGCGCGGG----GAG----------CG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Smal      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+|      |.|.||||   |        ||
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      13/34 (38.2%)
+# Similarity:    13/34 (38.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGACGATC--------     26
+| |||..|     |.|.||| ||  |
+FC12044_91407      1 G-TCATGG-----CGGCCCG-CG--CGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      12/34 (35.3%)
+# Similarity:    12/34 (35.3%)
+# Gaps:          21/34 (61.8%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Smal      1 -TCGTATG-----CCGTCTTC------TGCTTGT     22
+||  |||     |||    |      .||  |
+FC12044_91407      1 GTC--ATGGCGGCCCG----CGCGGGGAGC--G-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+#
+#
+#=======================================
+Illumina_Smal      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+|      |.|.||||   |        ||
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+.|.||  ||||.|| | || |.||    |||          ||
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 45.0
+#
+#
+#=======================================
+Illumina_Smal      1 CGACA-GGTTCAGAGTTCTACAGTCCGACGATC--------     32
+|.|| ||            |.|.||| ||  |
+FC12044_91407      1 -GTCATGG------------CGGCCCG-CG--CGGGGAGCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          30/44 (68.2%)
+# Score: 57.5
+#
+#
+#=======================================
+Illumina_Geno      1 -------GATC----GGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+|.||    .|||||| |||
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAG-TCG------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+||       ||||.      |.||     ||
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGA-GATCTACACTCTTTCCCTACACGA-----     44
+||.|. |.|      ||||.      |.||
+FC12044_91407      1 ---------------ACAGTGGGT------TCTTA------AAGAAGAGT     23
+Illumina_Geno     45 CGCTCTTCCGATCT     58
+||
+FC12044_91407     24 CG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      11/48 (22.9%)
+# Similarity:    11/48 (22.9%)
+# Gaps:          37/48 (77.1%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Geno      1 ----------C--AAGCAGAAGA--CGGCATACGAGCTCTTCCGATCT     34
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG---------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+||       ||||.      |.||     ||
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      17/36 (47.2%)
+# Similarity:    17/36 (47.2%)
+# Gaps:          15/36 (41.7%)
+# Score: 58.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTC----AGCAGGAATGCCGAG     32
+.|   ||.| |||||    || |.||.|  ||
+FC12044_91407      1 --AC---AGTG-GGTTCTTAAAG-AAGAGT--CG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+||       ||||.      |.||     ||
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGA-GATCTACACTCTTTCCCTACACGA-----     44
+||.|. |.|      ||||.      |.||
+FC12044_91407      1 ---------------ACAGTGGGT------TCTTA------AAGAAGAGT     23
+Illumina_Pair     45 CGCTCTTCCGATCT     58
+||
+FC12044_91407     24 CG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      14/68 (20.6%)
+# Similarity:    14/68 (20.6%)
+# Gaps:          50/68 (73.5%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGG---CATACGAGA----TCGGTCTCGGCATTCCTGCT     43
+.|||.    ||   |.|| .|||    |||
+FC12044_91407      1 ---ACAGT----GGGTTCTTA-AAGAAGAGTCG-----------------     25
+Illumina_Pair     44 GAACCGCTCTTCCGATCT     61
+FC12044_91407     26 ------------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+||       ||||.      |.||     ||
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          16/39 (41.0%)
+# Score: 40.5
+#
+#
+#=======================================
+Illumina_Pair      1 -CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGA-TCT     37
+|.||   || .|||.|...|||          || ||.
+FC12044_91407      1 ACAGT---GG-GTTCTTAAAGAA----------GAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      12/35 (34.3%)
+# Similarity:    12/35 (34.3%)
+# Gaps:          19/35 (54.3%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCT----GAA----C-     26
+||.||.|.. |||    |||    |
+FC12044_91407      1 ---------ACAGTGGGT-TCTTAAAGAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      15/36 (41.7%)
+# Similarity:    15/36 (41.7%)
+# Gaps:          21/36 (58.3%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACA---GGTTC-------AGAGTTCTACAGTCCGAC     26
+|||   |||||       |||||         ||
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGT---------CG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       7/36 (19.4%)
+# Similarity:     7/36 (19.4%)
+# Gaps:          26/36 (72.2%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ---------TCGTA------TGCCGTCTTCTGCTTG     21
+||.||      .|.||
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGTCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+|||   |||||       |||||
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+Illumina_DpnI     41 CCGA     44
+||
+FC12044_91407     24 -CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGTCCGACGA-TC-     32
+||||    .|.|||||..|.   ||.|| ||
+FC12044_91407      1 --ACAG----TGGGTTCTTAAA---GAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 48.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACTGTAGAACTCT----GAA----C-     21
+||.||.|.. |||    |||    |
+FC12044_91407      1 ----ACAGTGGGT-TCTTAAAGAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          24/39 (61.5%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACA---GGTTC-------AGAGTTCTACAGTCCGACATG     29
+|||   |||||       |||||         ||
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGT---------CG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      11/37 (29.7%)
+# Similarity:    11/37 (29.7%)
+# Gaps:          26/37 (70.3%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------C--AAGCAGAAGA--CGGCATACGANN     23
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       7/36 (19.4%)
+# Similarity:     7/36 (19.4%)
+# Gaps:          26/36 (72.2%)
+# Score: 24.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---------TCGTA------TGCCGTCTTCTGCTTG     21
+||.||      .|.||
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGTCG-----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+|||   |||||       |||||
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+Illumina_NlaI     41 CCGA     44
+||
+FC12044_91407     24 -CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      15/42 (35.7%)
+# Similarity:    15/42 (35.7%)
+# Gaps:          27/42 (64.3%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACA---GGTTC-------AGAGTTCTACAGTCCGACATG     32
+|||   |||||       |||||         ||
+FC12044_91407      1 ---ACAGTGGGTTCTTAAAGAAGAGT---------CG-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      15/30 (50.0%)
+# Similarity:    15/30 (50.0%)
+# Gaps:           9/30 (30.0%)
+# Score: 57.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGA--GTTCTACAGTCCGACGA-TC-     26
+.|||.  |||||..|.   ||.|| ||
+FC12044_91407      1 --ACAGTGGGTTCTTAAA---GAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       7/38 (18.4%)
+# Similarity:     7/38 (18.4%)
+# Gaps:          29/38 (76.3%)
+# Score: 25.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCCGTCTTCTG------CTT--------GT--     22
+.|.|      |||        ||
+FC12044_91407      1 -------------ACAGTGGGTTCTTAAAGAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+|  ||  ||||||  ||
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+|||   |||||       |||||
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+Illumina_Smal     41 CCGA     44
+||
+FC12044_91407     24 -CG-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 67.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGTCCGACGA-TC-     32
+||||    .|.|||||..|.   ||.|| ||
+FC12044_91407      1 --ACAG----TGGGTTCTTAAA---GAAGAGTCG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          16/37 (43.2%)
+# Score: 77.5
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGC-CGTCTT--CTGCTTG-     33
+|.||  ||.|       || ||.|||  |  ||||
+FC12044_91407      1 -AACG--AGGG-------GCGCGACTTGAC--CTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+| ||||    ||| .|||  ||.||
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          41/62 (66.1%)
+# Score: 65.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATAC----GGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+.||    ||||     |||          |||         |||
+FC12044_91407      1 -----AACGAGGGGCG-----CGA----------CTT---------GAC-     20
+Illumina_Geno     47 CTCTTCCGATCT     58
+|||  |.
+FC12044_91407     21 --CTT--GG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          15/37 (40.5%)
+# Score: 64.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT---     34
+|.| ||.|  |||  .|||   |||  ||.||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGA---CTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+| ||||    ||| .|||  ||.||
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:           9/33 (27.3%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG-     32
+|.| ||.|.|||   |..|..||   ||..|
+FC12044_91407      1 -AAC-GAGGGGCG---CGACTTGA---CCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+| ||||    ||| .|||  ||.||
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          41/62 (66.1%)
+# Score: 65.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATAC----GGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+.||    ||||     |||          |||         |||
+FC12044_91407      1 -----AACGAGGGGCG-----CGA----------CTT---------GAC-     20
+Illumina_Pair     47 CTCTTCCGATCT     58
+|||  |.
+FC12044_91407     21 --CTT--GG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          38/62 (61.3%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCAT-TCCTGCTGAACCG     49
+.|||||   ||.|.||.|.| .|||  ||.
+FC12044_91407      1 ----------------AACGAG---GGGCGCGACTTGACCT--TGG----     25
+Illumina_Pair     50 CTCTTCCGATCT     61
+FC12044_91407     26 ------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+| ||||    ||| .|||  ||.||
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      13/47 (27.7%)
+# Similarity:    13/47 (27.7%)
+# Gaps:          32/47 (68.1%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAAC------CGC-TCTTCCGATCT---     37
+|||      ||| .|||  ||.||
+FC12044_91407      1 --------------------AACGAGGGGCGCGACTT--GACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:          11/31 (35.5%)
+# Score: 56.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGT----CG-GACTGTAGAACTCTGAAC     26
+|.||.    || |||  |.||.|| ||.
+FC12044_91407      1 -AACGAGGGGCGCGAC--TTGACCT-TGG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      11/39 (28.2%)
+# Similarity:    11/39 (28.2%)
+# Gaps:          27/39 (69.2%)
+# Score: 39.5
+#
+#
+#=======================================
+Illumina_DpnI      1 -AC-AGGTTCAGAGTTCTACAGTC-CGAC----------     26
+|| |||              |.| ||||
+FC12044_91407      1 AACGAGG--------------GGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA-----------     21
+|.| ||.|  |||  .|||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -TCGT-ATGC-CGTCTT--CTGCTTG-     21
+.||. ..|| ||.|||  |  ||||
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA-----------     21
+|.| ||.|  |||  .|||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+.||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+Illumina_DpnI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          25/41 (61.0%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --CGACAGGTTCAGAGTTCTACAGTC-CGAC--GATC----     32
+||  |||              |.| ||||  ||.|
+FC12044_91407      1 AACG--AGG--------------GGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCG--------GACTGTAGAACTCTGAAC     21
+.||        |||  |.||.|| ||.
+FC12044_91407      1 AACGAGGGGCGCGAC--TTGACCT-TGG--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          24/39 (61.5%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -AC-AGGTTCAGAGTTCTACAGTC-CGACATG-------     29
+|| |||              |.| ||||.||
+FC12044_91407      1 AACGAGG--------------GGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          14/31 (45.2%)
+# Score: 37.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAG---ACGGCAT-AC----GANN     23
+|.| ||.|   .||.|.| ||    |
+FC12044_91407      1 --AAC-GAGGGGCGCGACTTGACCTTGG---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 60.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGT-ATGC-CGTCTT--CTGCTTG-     21
+.||. ..|| ||.|||  |  ||||
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA-----------     21
+|.| ||.|  |||  .|||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+.||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+Illumina_NlaI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 49.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGAC-AGGTTCAGAGTTCTACAGTC-CGACATG-------     32
+.|| |||              |.| ||||.||
+FC12044_91407      1 --AACGAGG--------------GGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA-----------     21
+|.| ||.|  |||  .|||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 37.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTAC---AGTC-CGAC--GATC----     26
+.||   .|.| ||||  ||.|
+FC12044_91407      1 -----------AACGAGGGGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           7/27 (25.9%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Smal      1 -TCGT-ATGC-CGTCTT--CTGCTTGT     22
+.||. ..|| ||.|||  |  ||||.
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA-----------     21
+|.| ||.|  |||  .|||
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+.||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+Illumina_Smal     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          25/41 (61.0%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 --CGACAGGTTCAGAGTTCTACAGTC-CGAC--GATC----     32
+||  |||              |.| ||||  ||.|
+FC12044_91407      1 AACG--AGG--------------GGCGCGACTTGACCTTGG     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          30/44 (68.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCTCGTAT---GCCGTCTTCTG-----CTTG---     33
+|.|   .||  |  |.|     ||||
+FC12044_91407      1 ---------------TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+|||||| ||.|   ||.|| |||  |..|
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GACGC     47
+|||||| ||.|   ||.||
+FC12044_91407      1 -------------------------------TTTCCC-ACCCCAGGAAGC     18
+Illumina_Geno     48 TCTTCCGATCT     58
+|||  |..|
+FC12044_91407     19 -CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          27/43 (62.8%)
+# Score: 48.5
+#
+#
+#=======================================
+Illumina_Geno      1 ---------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+|   |||.|           ||| |||  |..|
+FC12044_91407      1 TTTCCCACCC---CAGGA-----------AGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+|||||| ||.|   ||.|| |||  |..|
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTT-------CAGCAGGAATGCCGAG---     32
+||       |  |||||| |||..|
+FC12044_91407      1 --------------TTTCCCACCC--CAGGAA-GCCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+|||||| ||.|   ||.|| |||  |..|
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GACGC     47
+|||||| ||.|   ||.||
+FC12044_91407      1 -------------------------------TTTCCC-ACCCCAGGAAGC     18
+Illumina_Pair     48 TCTTCCGATCT     58
+|||  |..|
+FC12044_91407     19 -CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      15/68 (22.1%)
+# Similarity:    15/68 (22.1%)
+# Gaps:          50/68 (73.5%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACC--     48
+.||||  |   |||
+FC12044_91407      1 ----------------------------------TTTCC--C---ACCCC     11
+Illumina_Pair     49 -----GCTCTTCCGATCT     61
+|| |||  |..|
+FC12044_91407     12 AGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+|||||| ||.|   ||.|| |||  |..|
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      15/44 (34.1%)
+# Similarity:    15/44 (34.1%)
+# Gaps:          26/44 (59.1%)
+# Score: 67.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACC-------GCTCTTCCGATCT     37
+.||||  |   |||       || |||  |..|
+FC12044_91407      1 ----------TTTCC--C---ACCCCAGGAAGC-CTT--GGAC-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGT--------CGGACTGTAGAA--CTCTGAAC     26
+|        |   |.|  |||  || ||.||
+FC12044_91407      1 -----TTTCCCACCC---CAG--GAAGCCT-TGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTAC-------AGTCC---GAC     26
+.|||      |.||       || ||   |||
+FC12044_91407      1 ----TTTC------CCACCCCAGGAAG-CCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTAT---GCCGTCTTCTG-----CTTG---     21
+|.|   .||  |  |.|     ||||
+FC12044_91407      1 ---TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+.|.|     ||||| .||||.. |      ||   ||
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          31/44 (70.5%)
+# Score: 44.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---------CGACAGGTTCAGAGTTCTACAGTCC---GACGATC     32
+|  ||||.  ||           ||   |||
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --TC--------GGA--CTGTAGAACTCTGAAC     21
+||        |||  |       || ||.||
+FC12044_91407      1 TTTCCCACCCCAGGAAGC-------CT-TGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      13/38 (34.2%)
+# Similarity:    13/38 (34.2%)
+# Gaps:          22/38 (57.9%)
+# Score: 44.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCC---GA---CATG---     29
+.|||      |.||   ||   ||   |.||
+FC12044_91407      1 ----TTTC------CCAC---CCCAGGAAGCCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---------CAAGCAGAAGACGGCAT--ACGANN     23
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTAT---GCCGTCTTCTG-----CTTG---     21
+|.|   .||  |  |.|     ||||
+FC12044_91407      1 ---TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+.|.|     ||||| .||||.. |      ||   ||
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --------CCGACAGGTTCAGAGTTCTACAGTCC---GACATG     32
+||  ||||.  ||           ||   |||
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAGAGTTCTAC-------AGTCC---GACGATC     26
+.|||      |.||       || ||   |||
+FC12044_91407      1 TTTC------CCACCCCAGGAAG-CCTTGGAC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          23/35 (65.7%)
+# Score: 38.5
+#
+#
+#=======================================
+Illumina_Smal      1 --TC--------GTATGCC---GTCTTCTGCTTGT     22
+||        |.|.|||   |.|
+FC12044_91407      1 TTTCCCACCCCAGGAAGCCTTGGAC----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+|   |||.|..|  |.|  ||
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+.|.|     ||||| .||||.. |      ||   ||
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          31/44 (70.5%)
+# Score: 44.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---------CGACAGGTTCAGAGTTCTACAGTCC---GACGATC     32
+|  ||||.  ||           ||   |||
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      17/37 (45.9%)
+# Similarity:    17/37 (45.9%)
+# Gaps:          16/37 (43.2%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAG-CT-CGTATGCC--GTCTTCTGCTTG     33
+||     || || ||  ||||  |.|..||.|
+FC12044_91407      1 --TC-----AGCCTCCG--TGCCCAGCCCACTCC---     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+.||  || |.|.|||..|.| ||     |||
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 58
+# Identity:      18/58 (31.0%)
+# Similarity:    18/58 (31.0%)
+# Gaps:          33/58 (56.9%)
+# Score: 98.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+.|.|   ||.|||.|             |||..|.| ||
+FC12044_91407      1 ------TCAG---CCTCCGTG-------------CCCAGCCC-AC-----     22
+Illumina_Geno     51 TCCGATCT     58
+|||
+FC12044_91407     23 TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          13/36 (36.1%)
+# Score: 68.0
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT--     34
+.|.||.|.||.||.|..||.| ||
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCA-CTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+.||  || |.|.|||..|.| ||     |||
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          29/43 (67.4%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAG---CAGGAATGCCGAG--------     32
+||||   |.|   ||||.||
+FC12044_91407      1 ---------------TCAGCCTCCG---TGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+.||  || |.|.|||..|.| ||     |||
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 58
+# Identity:      18/58 (31.0%)
+# Similarity:    18/58 (31.0%)
+# Gaps:          33/58 (56.9%)
+# Score: 98.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+.|.|   ||.|||.|             |||..|.| ||
+FC12044_91407      1 ------TCAG---CCTCCGTG-------------CCCAGCCC-AC-----     22
+Illumina_Pair     51 TCCGATCT     58
+|||
+FC12044_91407     23 TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 63
+# Identity:      19/63 (30.2%)
+# Similarity:    19/63 (30.2%)
+# Gaps:          40/63 (63.5%)
+# Score: 99.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCT-CG-GCATTCCTGCTGAACC     48
+||.|.|| || ||   ||.||    ||
+FC12044_91407      1 -----------------------TCAGCCTCCGTGC---CCAGC----CC     20
+Illumina_Pair     49 GCTCTTCCGATCT     61
+.|||  |
+FC12044_91407     21 ACTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+.||  || |.|.|||..|.| ||     |||
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      18/40 (45.0%)
+# Similarity:    18/40 (45.0%)
+# Gaps:          18/40 (45.0%)
+# Score: 92.0
+#
+#
+#=======================================
+Illumina_Pair      1 -CGGTCT-CG-GCATTCCTGCTGAACCGCTCTTCCGATCT     37
+|.|.|| || ||   ||.||    ||.|||  |
+FC12044_91407      1 TCAGCCTCCGTGC---CCAGC----CCACTC--C------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 50.0
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACT--GT----AG--AACTCTGAAC     26
+||.|.||  ||    ||  .||||    |
+FC12044_91407      1 -----TCAGCCTCCGTGCCCAGCCCACTC----C     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 53.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAG-----GTTCAGAGTTCTACAGTCCGAC---     26
+.|||     ||.|      |  |||.|| ||
+FC12044_91407      1 TCAGCCTCCGTGC------C--CAGCCC-ACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+.|.||.|.||.
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCTTG-------------     21
+||   .||| ||     |.||
+FC12044_91407      1 TC---AGCC-TC-----CGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+.|.||.|.||.
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+.|.|   ||.|||.   |||   |      |.||  |||
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          19/38 (50.0%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAG-----GTTCAGAGTTCTACAGTCCGACGATC-     32
+.|||     ||.|      |  |||.|| ||  ||
+FC12044_91407      1 --TCAGCCTCCGTGC------C--CAGCCC-AC--TCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          12/29 (41.4%)
+# Score: 50.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGGACT--GT----AG--AACTCTGAAC     21
+||.|.||  ||    ||  .||||    |
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCCACTC----C     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      12/42 (28.6%)
+# Similarity:    12/42 (28.6%)
+# Gaps:          30/42 (71.4%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-------------     29
+||||    |  |  ||||   ||
+FC12044_91407      1 ------TCAG----C--C--TCCG---TGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       9/37 (24.3%)
+# Similarity:     9/37 (24.3%)
+# Gaps:          26/37 (70.3%)
+# Score: 30.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCA-TACGANN     23
+|.|||      |  || |.|
+FC12044_91407      1 TCAGCCTCCGTGCCCAGC------C--CACTCC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 43.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCTTG-------------     21
+||   .||| ||     |.||
+FC12044_91407      1 TC---AGCC-TC-----CGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA--------------     21
+.|.||.|.||.
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+.|.|   ||.|||.   |||   |      |.||  |||
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -------CCGA---CAGGTTCAGAGTTCTACAGTCCGACATG     32
+|||.   |||   |      |.||  |||
+FC12044_91407      1 TCAGCCTCCGTGCCCAG---C------CCAC--TCC------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+.|.||.|.||.
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      16/31 (51.6%)
+# Similarity:    16/31 (51.6%)
+# Gaps:          11/31 (35.5%)
+# Score: 59.0
+#
+#
+#=======================================
+Illumina_Smal      1 GTTCAG----AGTTCTACAGTCCGACGATC-     26
+||||    .||.| .|||.|| ||  ||
+FC12044_91407      1 --TCAGCCTCCGTGC-CCAGCCC-AC--TCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          15/31 (48.4%)
+# Score: 42.0
+#
+#
+#=======================================
+Illumina_Smal      1 ------T-CGTATGCC--GTCTTCTGCTTGT     22
+| ||  ||||  |.|..||.|
+FC12044_91407      1 TCAGCCTCCG--TGCCCAGCCCACTCC----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+.|.||.|.||.
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+.|.|   ||.|||.   |||   |      |.||  |||
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          19/38 (50.0%)
+# Score: 59.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAG-----GTTCAGAGTTCTACAGTCCGACGATC-     32
+.|||     ||.|      |  |||.|| ||  ||
+FC12044_91407      1 --TCAGCCTCCGTGC------C--CAGCCC-AC--TCC     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 44.0
+#
+#
+#=======================================
+Illumina_Geno      1 GATCGGAAGAGCT----C------GTATGCCGTCTTCTGCTTG     33
+.||||.|| |||    |      ||.
+FC12044_91407      1 -CTCGGGAG-GCTGAGGCAGGGGGGTT----------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+|.|  ||.|||    |       ||
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      10/71 (14.1%)
+# Similarity:    10/71 (14.1%)
+# Gaps:          59/71 (83.1%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC--GACGCT     48
+|.|  ||.|||
+FC12044_91407      1 ---------------------------------------CTCGGGAGGCT     11
+Illumina_Geno     49 ----C-------TTCCGATCT     58
+|       ||
+FC12044_91407     12 GAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          15/37 (40.5%)
+# Score: 43.5
+#
+#
+#=======================================
+Illumina_Geno      1 CAAGCAGAAGAC---GGCATACGAGCTCTTCCGATCT     34
+|.  |.|.||.|   ||||...|.|   ||
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGG---TT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+|.|  ||.|||    |       ||
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          13/35 (37.1%)
+# Score: 57.0
+#
+#
+#=======================================
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG---     32
+.||||.|| ||.|.  .|||||      |.|
+FC12044_91407      1 -CTCGGGAG-GCTGA--GGCAGG------GGGGTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+|.|  ||.|||    |       ||
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      10/71 (14.1%)
+# Similarity:    10/71 (14.1%)
+# Gaps:          59/71 (83.1%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC--GACGCT     48
+|.|  ||.|||
+FC12044_91407      1 ---------------------------------------CTCGGGAGGCT     11
+Illumina_Pair     49 ----C-------TTCCGATCT     58
+|       ||
+FC12044_91407     12 GAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      14/69 (20.3%)
+# Similarity:    14/69 (20.3%)
+# Gaps:          52/69 (75.4%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+|||||.|    .|||||.  ||
+FC12044_91407      1 ----------------------------CTCGGGA----GGCTGAG--GC     16
+Illumina_Pair     51 --------TCTTCCGATCT     61
+|
+FC12044_91407     17 AGGGGGGTT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+|.|  ||.|||    |       ||
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      14/45 (31.1%)
+# Similarity:    14/45 (31.1%)
+# Gaps:          28/45 (62.2%)
+# Score: 50.5
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGC--------TCTTCCGATCT     37
+|||||.|    .|||||.  ||        |
+FC12044_91407      1 ----CTCGGGA----GGCTGAG--GCAGGGGGGTT----------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGA-AC---------     26
+| ||||   |..|    |||| .|
+FC12044_91407      1 ---C-TCGG---GAGG----CTGAGGCAGGGGGGTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       8/40 (20.0%)
+# Similarity:     8/40 (20.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_DpnI      1 --------------ACAGGTTCAGAGTTCTACAGTCCGAC     26
+.||||   .|.|||
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 27.0
+#
+#
+#=======================================
+Illumina_DpnI      1 -TCGTATGCCGTCTTCT---GC-------TTG     21
+|||...|  |    ||   ||       ||
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|      ||| ||     |.||||   .|.|||
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+Illumina_DpnI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_DpnI      1 --CGACAGGTTCAGAGTTCTACAG------TCCGACGATC     32
+||..|||  |.|||    .|||      |
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGGACTGTAGAACTCTGA-AC---------     21
+||||   |..|    |||| .|
+FC12044_91407      1 CTCGG---GAGG----CTGAGGCAGGGGGGTT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:       8/43 (18.6%)
+# Similarity:     8/43 (18.6%)
+# Gaps:          32/43 (74.4%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_NlaI      1 --------------ACAGGTTCAGAGTTCTACAGTCCGACATG     29
+.||||   .|.|||
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGAC---GGCA-------TACGANN     23
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 27.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -TCGTATGCCGTCTTCT---GC-------TTG     21
+|||...|  |    ||   ||       ||
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|      ||| ||     |.||||   .|.|||
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+Illumina_NlaI     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          29/43 (67.4%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_NlaI      1 ---------CCGA--CAGGTTCAGAGTTCTACAGTCCGACATG     32
+|.||  ||||   .|.|||
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       9/40 (22.5%)
+# Similarity:     9/40 (22.5%)
+# Gaps:          29/40 (72.5%)
+# Score: 25.5
+#
+#
+#=======================================
+Illumina_Smal      1 --------GTTCAGAGTTCTACAG------TCCGACGATC     26
+|  |.|||    .|||      |
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          19/33 (57.6%)
+# Score: 27.0
+#
+#
+#=======================================
+Illumina_Smal      1 -TCGTATGCCGTCTTCT---GC-------TTGT     22
+|||...|  |    ||   ||       ||
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+|.  |.|.||.|   ||||       |
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+|      ||| ||     |.||||   .|.|||
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+Illumina_Smal     44 A     44
+FC12044_91407     26 -     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 42.5
+#
+#
+#=======================================
+Illumina_Smal      1 --CGACAGGTTCAGAGTTCTACAG------TCCGACGATC     32
+||..|||  |.|||    .|||      |
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      16/40 (40.0%)
+# Similarity:    16/40 (40.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 ---GATC-GGAA--G-AGCTCGTATGCCGTCTTCTGCTTG     33
+.||| .|||  | |||||     ||  ||
+FC12044_91407      1 CCAAATCTTGAATTGTAGCTC-----CC--CT--------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      15/65 (23.1%)
+# Similarity:    15/65 (23.1%)
+# Gaps:          47/65 (72.3%)
+# Score: 80.0
+#
+#
+#=======================================
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACG     43
+|| |.||||..|       |||   ||||
+FC12044_91407      1 ----------------CC-AAATCTTGAATTGTAGCTC---CCCT-----     25
+Illumina_Geno     44 ACGCTCTTCCGATCT     58
+FC12044_91407     26 ---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          19/39 (48.7%)
+# Score: 62.0
+#
+#
+#=======================================
+Illumina_Geno      1 -CAAG-C-AGAA--GACGGCATACGAGCTCTTCCGATCT     34
+|||. | .|||  |.         |||||  ||   ||
+FC12044_91407      1 CCAAATCTTGAATTGT---------AGCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_Geno      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 37.0
+#
+#
+#=======================================
+Illumina_Pair      1 ---GATC-GGAA--G-AGCGGTTCAGCAGGAATGCCGAG     32
+.||| .|||  | |||   ||  |       ||.
+FC12044_91407      1 CCAAATCTTGAATTGTAGC---TC--C-------CCT--     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      15/65 (23.1%)
+# Similarity:    15/65 (23.1%)
+# Gaps:          47/65 (72.3%)
+# Score: 80.0
+#
+#
+#=======================================
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACG     43
+|| |.||||..|       |||   ||||
+FC12044_91407      1 ----------------CC-AAATCTTGAATTGTAGCTC---CCCT-----     25
+Illumina_Pair     44 ACGCTCTTCCGATCT     58
+FC12044_91407     26 ---------------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      21/61 (34.4%)
+# Similarity:    21/61 (34.4%)
+# Gaps:          36/61 (59.0%)
+# Score: 74.0
+#
+#
+#=======================================
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+|  ||.|         |||.|  |.|     ||.|  ||
+FC12044_91407      1 -----------C--CAAA---------TCTTG--AAT-----TGTA--GC     19
+Illumina_Pair     51 TCTTCCGATCT     61
+||  ||   ||
+FC12044_91407     20 TC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_Pair      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      17/41 (41.5%)
+# Similarity:    17/41 (41.5%)
+# Gaps:          20/41 (48.8%)
+# Score: 66.0
+#
+#
+#=======================================
+Illumina_Pair      1 CGGTCTCGGC--ATTCCTGC--TGAACCGCTCTTCCGATCT     37
+|  |.||.||.  ||.|  ||||  ||   ||
+FC12044_91407      1 ---------CCAAATCTTGAATTGTA--GCTC--CC---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      15/32 (46.9%)
+# Similarity:    15/32 (46.9%)
+# Gaps:          13/32 (40.6%)
+# Score: 61.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ---GATCGTCGGACTGTAGAACTCTGAAC---     26
+.|||.| |.|.|||||  |||    |
+FC12044_91407      1 CCAAATCTT-GAATTGTAG--CTC----CCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:           9/30 (30.0%)
+# Score: 49.0
+#
+#
+#=======================================
+Illumina_DpnI      1 ACAGGTTC-AGAGTTCTA-CAGTCCGAC--     26
+|....|| .||.||.|| |  |||  |
+FC12044_91407      1 -CCAAATCTTGAATTGTAGC--TCC--CCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+|   ||.|.     |.|  ||
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       8/37 (21.6%)
+# Similarity:     8/37 (21.6%)
+# Gaps:          28/37 (75.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_DpnI      1 TCGTATGCC--GTCTT--------------CTGCTTG     21
+||  .||||              ||
+FC12044_91407      1 -------CCAAATCTTGAATTGTAGCTCCCCT-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+|   ||.|.     |.|  ||
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+||.|    .|| .||.||    ||.|   ||.
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_DpnI      1 CGACAGGTTC-AGAGTTCTA-CAGTCCGACGATC-     32
+|  || ..|| .||.||.|| |  |||  |   |
+FC12044_91407      1 C--CA-AATCTTGAATTGTAGC--TCC--C---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          16/31 (51.6%)
+# Score: 55.5
+#
+#
+#=======================================
+Illumina_NlaI      1 -----TC--GGACTGTAGAACTCTGAAC---     21
+||  |.|.|||||  |||    |
+FC12044_91407      1 CCAAATCTTGAATTGTAG--CTC----CCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:           8/31 (25.8%)
+# Score: 50.0
+#
+#
+#=======================================
+Illumina_NlaI      1 ACAGGTTC-AGAGTTCTA-CAGTCCGACATG     29
+|....|| .||.||.|| |  |||  |.|
+FC12044_91407      1 -CCAAATCTTGAATTGTAGC--TCC--CCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 20.0
+#
+#
+#=======================================
+Illumina_NlaI      1 -CAAG-C-AGAA--GA-----CGGCATACGANN     23
+|||. | .|||  |.     |  |.|
+FC12044_91407      1 CCAAATCTTGAATTGTAGCTCC--CCT------     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       8/37 (21.6%)
+# Similarity:     8/37 (21.6%)
+# Gaps:          28/37 (75.7%)
+# Score: 39.0
+#
+#
+#=======================================
+Illumina_NlaI      1 TCGTATGCC--GTCTT--------------CTGCTTG     21
+||  .||||              ||
+FC12044_91407      1 -------CCAAATCTTGAATTGTAGCTCCCCT-----     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA--------------     21
+|   ||.|.     |.|  ||
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+||.|    .|| .||.||    ||.|   ||.
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 62.5
+#
+#
+#=======================================
+Illumina_NlaI      1 CCGACAGGTTC-AGAGTTCTA-CAGTCCGACATG     32
+||.|    .|| .||.||.|| |  |||  |.|
+FC12044_91407      1 CCAA----ATCTTGAATTGTAGC--TCC--CCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+|   ||.|.     |.|  ||
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          13/32 (40.6%)
+# Score: 46.0
+#
+#
+#=======================================
+Illumina_Smal      1 ---GTTC-AGAGTTCTA-CAGTCCGACGATC-     26
+..|| .||.||.|| |  |||  |   |
+FC12044_91407      1 CCAAATCTTGAATTGTAGC--TCC--C---CT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          21/34 (61.8%)
+# Score: 45.0
+#
+#
+#=======================================
+Illumina_Smal      1 TCGTATGCC--GTCTTCTG-CTTGT---------     22
+||  .|||  || .||||
+FC12044_91407      1 -------CCAAATCT--TGAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+#
+#
+#=======================================
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+|   ||.|.     |.|  ||
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+#
+#
+#=======================================
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+||.|    .|| .||.||    ||.|   ||.
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+#
+#
+#=======================================
+Illumina_Smal      1 CGACAGGTTC-AGAGTTCTA-CAGTCCGACGATC-     32
+|  || ..|| .||.||.|| |  |||  |   |
+FC12044_91407      1 C--CA-AATCTTGAATTGTAGC--TCC--C---CT     25
+#---------------------------------------
+#---------------------------------------

Mercurial > repos > iuc > emboss_needle

comparison test-data/emboss_needleall_out.pair @ 0:2f0dc62d0a19 draft default tip