# HG changeset patch
# User iuc
# Date 1737390111 0
# Node ID 76373359fce2b0a4a2cda71c1621425e0a0dcb7d

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss commit 08f38b1f9b4241ba9037c64f732621efc628fd43

diff -r 000000000000 -r 76373359fce2 emboss_needleall.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/emboss_needleall.xml	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,97 @@
+<tool id="emboss_needleall" name="EMBOSS: needleall" version="@VERSION@+galaxy0" profile="@PROFILE@">
+  <description>Many-to-many Needleman-Wunsch global alignment</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="bio_tools" />
+  <expand macro="requirements" />
+  <version_command>needleall -version</version_command>
+  <command detect_errors="exit_code"><![CDATA[
+needleall
+-asequence '$asequence'
+-bsequence '$bsequence'
+-outfile '$out_file1'
+-gapopen $gapopen
+-gapextend $gapextend
+-brief $brief
+-aformat3 $out_format1
+-auto
+#if $datafile
+-datafile $datafile
+#end if
+#if $endgap.endweight == 'yes'
+-endopen $endgap.endopen
+-endextend $endgap.endextend
+#end if
+-minscore $minscore
+]]></command>
+  <inputs>
+    <param argument="-asequence" type="data" format="fasta,fastq" label="Sequence set 1" />
+    <param argument="-bsequence" type="data" format="fasta,fastq" label="Sequence set 2" />
+
+    <expand macro="scoring_matrix"/>
+    <expand macro="gap_penalties"/>
+    <expand macro="endgap_penalties"/>
+    <expand macro="param_brief"/>
+
+    <param argument="-minscore" type="float" value="1.0" min="-10.0" max="100.0" label="Minimum alignment score to report an alignment." help=""/>
+
+    <expand macro="choose_alignment_output_format"/>
+  </inputs>
+  <outputs>
+    <data name="out_file1" format="needle" label="${tool.name} on ${on_string}: alignment output">
+      <expand macro="change_alignment_output_format"/>
+    </data>
+  </outputs>
+  <tests>
+    <test>
+      <param name="asequence" value="emboss_needleall_input1.fa"/>
+      <param name="bsequence" value="emboss_needleall_input2.fq"/>
+      <param name="gapopen" value="10"/>
+      <param name="gapextend" value="0.5"/>
+      <param name="brief" value="yes"/>
+      <param name="out_format1" value="score"/>
+      <output name="out_file1" file="emboss_needleall_out.score" ftype="score"/>
+    </test>
+    <test><!-- test fasta output -->
+      <param name="asequence" value="emboss_needleall_input1.fa"/>
+      <param name="bsequence" value="emboss_needleall_input2.fq"/>
+      <param name="gapopen" value="10"/>
+      <param name="gapextend" value="0.5"/>
+      <param name="brief" value="yes"/>
+      <param name="out_format1" value="fasta"/>
+      <output name="out_file1" file="emboss_needleall_out.fasta" ftype="fasta"/>
+    </test>
+     <test><!-- test with pair output, endgap penalties and custom scoring matrix -->
+      <param name="asequence" value="emboss_needleall_input1.fa"/>
+      <param name="bsequence" value="emboss_needleall_input2.fq"/>
+      <param name="gapopen" value="10"/>
+      <param name="gapextend" value="0.5"/>
+      <conditional name="endgap">
+        <param name="endweight" value="yes"/>
+        <param name="endopen" value="13.37"/>
+        <param name="endextend" value="2.5"/>
+      </conditional>
+      <param name="brief" value="yes"/>
+      <param name="datafile" value="EPAM30"/>
+      <param name="out_format1" value="pair"/>
+      <output name="out_file1" file="emboss_needleall_out.pair" lines_diff="10" ftype="pair"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+
+needleall reads in two nucleotide or protein sequences inputs. Both can be one or more sequences. All sequences in the first input are aligned to all sequences in the second input.
+
+This tool uses the Needleman-Wunsch global alignment algorithm to find the optimum alignment (including gaps) of two sequences when considering their entire length.
+
+- **Optimal alignment:** Dynamic programming methods ensure the optimal global alignment by exploring all possible alignments and choosing the best.
+
+- **The Needleman-Wunsch algorithm** is a member of the class of algorithms that can calculate the best score and alignment in the order of mn steps, (where 'n' and 'm' are the lengths of the two sequences).
+
+- **Gap open penalty:** [10.0 for any sequence] The gap open penalty is the score taken away when a gap is created. The best value depends on the choice of comparison matrix. The default value assumes you are using the EBLOSUM62 matrix for protein sequences, and the EDNAFULL matrix for nucleotide sequences. (Floating point number from 1.0 to 100.0)
+
+- **Gap extension penalty:** [0.5 for any sequence] The gap extension, penalty is added to the standard gap penalty for each base or residue in the gap. This is how long gaps are penalized. Usually you will expect a few long gaps rather than many short gaps, so the gap extension penalty should be lower than the gap penalty. An exception is where one or both sequences are single reads with possible sequencing errors in which case you would expect many single base gaps. You can get this result by setting the gap open penalty to zero (or very low) and using the gap extension penalty to control gap scoring. (Floating point number from 0.0 to 10.0)
+
+  ]]></help>
+  <expand macro="citations" />
+</tool>
diff -r 000000000000 -r 76373359fce2 macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,159 @@
+<macros>
+    <token name="@PROFILE@">23.1</token>
+    <token name="@VERSION@">6.6.0</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">emboss</requirement>
+            <requirement type="package" version="5.26">perl</requirement>
+        </requirements>
+    </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">emboss</xref>
+        </xrefs>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1016/S0168-9525(00)02024-2</citation>
+            <citation type="doi">10.1101/gr.5578007</citation>
+            <yield />
+        </citations>
+    </xml>
+
+    <xml name="scoring_matrix">
+        <param argument="-datafile" type="select" optional="true" label="Scoring matrix" help="This is the scoring matrix used when comparing sequences. By default it is EBLOSUM62 (for proteins) or EDNAFULL (for nucleic sequences)">
+            <option value="EBLOSUM30">EBLOSUM30</option>
+            <option value="EBLOSUM35">EBLOSUM35</option>
+            <option value="EBLOSUM40">EBLOSUM40</option>
+            <option value="EBLOSUM45">EBLOSUM45</option>
+            <option value="EBLOSUM50">EBLOSUM50</option>
+            <option value="EBLOSUM55">EBLOSUM55</option>
+            <option value="EBLOSUM60">EBLOSUM60</option>
+            <option value="EBLOSUM62">EBLOSUM62</option>
+            <option value="EBLOSUM62-12">EBLOSUM62-12</option>
+            <option value="EBLOSUM65">EBLOSUM65</option>
+            <option value="EBLOSUM70">EBLOSUM70</option>
+            <option value="EBLOSUM75">EBLOSUM75</option>
+            <option value="EBLOSUM80">EBLOSUM80</option>
+            <option value="EBLOSUM85">EBLOSUM85</option>
+            <option value="EBLOSUM90">EBLOSUM90</option>
+            <option value="EBLOSUMN">EBLOSUMN</option>
+            <option value="EDNAFULL">EDNAFULL</option>
+            <option value="EDNAMAT">EDNAMAT</option>
+            <option value="EDNASIMPLE">EDNASIMPLE</option>
+            <option value="ENUC.4.2">ENUC.4.2</option>
+            <option value="ENUC.4.4">ENUC.4.4</option>
+            <option value="EPAM10">EPAM10</option>
+            <option value="EPAM100">EPAM100</option>
+            <option value="EPAM110">EPAM110</option>
+            <option value="EPAM120">EPAM120</option>
+            <option value="EPAM130">EPAM130</option>
+            <option value="EPAM140">EPAM140</option>
+            <option value="EPAM150">EPAM150</option>
+            <option value="EPAM160">EPAM160</option>
+            <option value="EPAM170">EPAM170</option>
+            <option value="EPAM180">EPAM180</option>
+            <option value="EPAM190">EPAM190</option>
+            <option value="EPAM20">EPAM20</option>
+            <option value="EPAM200">EPAM200</option>
+            <option value="EPAM210">EPAM210</option>
+            <option value="EPAM220">EPAM220</option>
+            <option value="EPAM230">EPAM230</option>
+            <option value="EPAM240">EPAM240</option>
+            <option value="EPAM250">EPAM250</option>
+            <option value="EPAM260">EPAM260</option>
+            <option value="EPAM270">EPAM270</option>
+            <option value="EPAM280">EPAM280</option>
+            <option value="EPAM290">EPAM290</option>
+            <option value="EPAM30">EPAM30</option>
+            <option value="EPAM300">EPAM300</option>
+            <option value="EPAM310">EPAM310</option>
+            <option value="EPAM320">EPAM320</option>
+            <option value="EPAM330">EPAM330</option>
+            <option value="EPAM340">EPAM340</option>
+            <option value="EPAM350">EPAM350</option>
+            <option value="EPAM360">EPAM360</option>
+            <option value="EPAM370">EPAM370</option>
+            <option value="EPAM380">EPAM380</option>
+            <option value="EPAM390">EPAM390</option>
+            <option value="EPAM40">EPAM40</option>
+            <option value="EPAM400">EPAM400</option>
+            <option value="EPAM410">EPAM410</option>
+            <option value="EPAM420">EPAM420</option>
+            <option value="EPAM430">EPAM430</option>
+            <option value="EPAM440">EPAM440</option>
+            <option value="EPAM450">EPAM450</option>
+            <option value="EPAM460">EPAM460</option>
+            <option value="EPAM470">EPAM470</option>
+            <option value="EPAM480">EPAM480</option>
+            <option value="EPAM490">EPAM490</option>
+            <option value="EPAM50">EPAM50</option>
+            <option value="EPAM500">EPAM500</option>
+            <option value="EPAM60">EPAM60</option>
+            <option value="EPAM70">EPAM70</option>
+            <option value="EPAM80">EPAM80</option>
+            <option value="EPAM90">EPAM90</option>
+            <option value="SSSUB">SSSUB</option>
+        </param>
+    </xml>
+
+    <xml name="param_brief">
+        <param argument="-brief" type="select" label="Brief identity and similarity">
+            <option value="yes">Yes</option>
+            <option value="no">No</option>
+        </param>
+    </xml>
+
+    <xml name="gap_penalties">
+        <param argument="-gapopen" type="float" value="10.0" min="1.0" max="100.0" label="Gap open penalty" />
+        <param argument="-gapextend" type="float" value="0.5" min="0.0" max="10.0"  label="Gap extension penalty" />
+    </xml>
+
+    <xml name="endgap_penalties">
+        <conditional name="endgap">
+            <param argument="-endweight" type="select" label="Apply end gap penalties?" help="">
+                <option value="yes">yes</option>
+                <option value="no" selected="true">no</option>
+            </param>
+            <when value="yes">
+                <param argument="-endopen" type="float" value="10.0" min="0.0" max="100.0" label="Penalty for creation of and end gap." help="The best value depends on the choice of comparison matrix. The default value assumes you are using the EBLOSUM62 matrix for protein sequences, and the EDNAFULL matrix for nucleotide sequences."/>
+                <param argument="-endextend" type="float" value="0.5" min="0.0" max="10.0" label="The end gap extensionpenalty" help="this penalty is added to the end gap penalty for each base or residue in the end gap."/>
+            </when>
+            <when value="no"/>
+        </conditional>
+    </xml>
+
+    <xml name="choose_alignment_output_format">
+        <param name="out_format1" type="select" label="Output alignment file format">
+            <option value="srspair">SRS pair (p)</option>
+            <option value="simple">Simple (m)</option>
+            <option value="fasta">FASTA (m)</option>
+            <option value="msf">MSF (m)</option>
+            <option value="srs">SRS (m)</option>
+            <option value="pair">Pair (p)</option>
+            <option value="markx0">Markx0 (p)</option>
+            <option value="markx1">Markx1 (p)</option>
+            <option value="markx2">Markx2 (p)</option>
+            <option value="markx3">Markx3 (p)</option>
+            <option value="markx10">Markx10 (p)</option>
+            <option value="score">Score (p)</option>
+        </param>
+    </xml>
+
+    <xml name="change_alignment_output_format">
+        <change_format>
+            <when input="out_format1" value="fasta" format="fasta"/>
+            <when input="out_format1" value="score" format="score"/>
+            <when input="out_format1" value="pair" format="pair"/>
+            <when input="out_format1" value="srspair" format="srspair"/>
+            <when input="out_format1" value="simple" format="simple"/>
+            <when input="out_format1" value="srs" format="srs"/>
+            <when input="out_format1" value="msf" format="msf"/>
+            <when input="out_format1" value="markx0" format="markx0"/>
+            <when input="out_format1" value="markx1" format="markx1"/>
+            <when input="out_format1" value="markx2" format="markx2"/>
+            <when input="out_format1" value="markx3" format="markx3"/>
+            <when input="out_format1" value="markx10" format="markx10"/>
+        </change_format>
+    </xml>
+</macros>
diff -r 000000000000 -r 76373359fce2 test-data/1.fasta
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/1.fasta	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,2 @@
+>hg17
+gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCC-------------------------------AAATACT-GCCACTGATGTCCTG-----ATGGAGGTA-------TGAA-------------------AACATCCACTAAAATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGATATTTGGggaaatt---ttgtatagactagctttcacgatgttagggaattattattgtgtgataatggtcttgcagttaca-cagaaattcttccttattttttgggaa---gcaccaaag----tagggat---aaaatgtcatgatgtgtgcaatacactttaaaatgtttttg-----ccaaaataatt----------------aatgaagc--aaatatggaaa-ataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcatttaaaaaaaaactttgagc-----tagacaccaggctatgagctaggagcatagcaatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa--------------------------------------------------ctc-aaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTA------CCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaattttccctg-ggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagttgatggccca-atccctgtcctct---taaaacctaagggaggagaTGGAAAGGGG-CACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATGGAGAGGCCCTAGTGGAAT-GGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTG-------CAATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta-aagggccaggtagaaaacattttaggctttctaagccaag--gcaaaat-tgaggatattacatgggtacttatacaacaagaataaacaatt---tacacaattttttgttgacagaattcaaaactttat----agacacagaaatgcaaatttcctgtaattttcccat-gagaactattcttct--tttgttttgttttgcgacAGGGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttcattttaatatggacacttatcagttcccaaataatacttttataattttttatgcctgtctttgctttaatctcttaatcctgttatcttcataagctaaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacagattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcaccttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaactataaggtctgactgcctgcggggtcgggcaaagggagccatatttttcttcttgcagagagcctataaatagacctgcaagtaggagagatattgctaatttcttttgctagcatggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctataaatggccgctctgggaatgtctatcctacgcaatggagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcagaccagttttctgctctcgaacactgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacacagacccttatcagtagttctcctttttgccctttgaagcatgtgatctactccctgttttacaccccctcaccttttgaaacccttaataaaaaacttgctggttt-gaggctcaggtgggcatcacagtactaccgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgacacttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCTGGTGCCCAACGTGGGAtactgagattacaagcatgagccactgcatctggcctcttcttttgatttttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtgg-caggctcggttcaccaacgtcatttgcagttccccgCTTTATGTTATGGgttttgttttgttttgtttttttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggctGGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCT-GCGCAGtggggaccagaataggcctg-------------------ggttcctagcccattgctattcctt----accagctgtggattctaaggaaagtcatttaacctcgctggaccttag-attcctcatccctgaaGCCCAAGGGTaaaacaaaacaaaacaaaacaaaacaaaccaaCCCATCATGTAAAGCGGGGAACTACAAACGATACAGGTGAAACATGCCTACCACACCACTCACAGGCT--ATGATGACAAAAACGTGGCTACATCTGGGACCACCCCCCAACCCCCACTTTGTACGTAGGAAATACGGAGTTGAGGATGGAGACCCACAGTATGTCCAGAGTGTCCCCAAAGGCCACAGTGCCCGCCTGGAGCCCTCCAGAGAGCGTGCACTCCCTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAACTCGATTCTCCGCGTGCCAGAGAAGGGGTGGGACTTCAGAACCCCCAACCCCGCAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAACCCTGGGCTTCCCTG------GCGTCCAGGGCCGTCGG-----------GGCCGAGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGACCAACGAGGGCGCAGCCGTATGCCCCAGCCCGCTCCGCGGAGCCCCTCACAGCCAcccccgccccgaccgcgccccgcgcggcTCGAAGCACCTTCCCAAGGGGCTGGTCCTTGC----------GCCATAGTCGCGCCGGAGCCTCTGGAGGGACATCAAGGATTTCTC-GCTCCTACCAGCCACCCCCAAATTTTTGGGAGGTACCCAAGGGTGCGCGCGTGGCTCCTGGCGCGCCGAGGCCCTCCCTCGAGGCCCCGCGAGGTGCACACTGC---------GGGCCCAGGGCTAGCAGCCGCCCGGCACGTCGCTACCCTGAGGGGCGGGGCGGGAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGTAGGAATCGCAGCGCCAGCGGTTGCAAGGTAAGGCCC-CGGCGCGCTCCTTCCTCCTTCTCTGCTGGTCTTTCTTGGCAGGCCACAGGGCCCCACACAACTCTGGATCCCGGGGAAACTGAGTCAGG-AGGGATGCAGGGCGGATGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAG-----TTCTAGCCAGATAGAAGGTTACCGGGAGCTGGGGAGCGTTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCA------GGACCTTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGACCCACCAACCTGGTGGCATTCGCAGAGCTGAGATGCATTGGAAATTGCCTTGGGCACATCCCCAAAGATCAGGATGTCCCACCCCAGTCTGAAGGAGA---TAAAGTTGGGGGTAGGAGAGACGCAG-ATGCAAGTGATCAGTCTC---AGTCCCAGACATTGCCTTGCTCTGCGGGTAGGAATTCAGGATTCATTTTCCAGGGAAG--------TTCCTGACCTCTGAATGAGAGGGGCTGTGTAAGGCCAATGCCTGGG-AGGAAGGCAAGGATGAGTAGAGGTGGGGGGAAACAAGTGTCAGGAAGA--------------------------------------------CTCAAA---------ATCTTC--------------------------------------------------------------CAGAGAAATTGT-----GCAGGGTCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCAT-ACAATGAGGTGTCTCTGGGGGTCAGAACTGG-----------------------TTATTAGGGAACTTCTAGCCAGGACTGCTAAATACGCGCTGTTGG---------CCCACCAGGCTCACCTATAGCCT-TCCTTCAGTCTGGGCTTGGTTTGGATTTCACTGTGGGTGCCATCGCCTTTACACTCCTGTTTCTATAGTTTAAAGATAGTGGTGCTTTGGGAAAG---TGACTCCTTAAATACAGTTAGGTCCAAGTGA-GACAAGTGGCCTGGCTGTCATTTCAGAATAGCAGCTTCCAAGAGG----------TGATTAATTTCTGTTGGAAGGGTGAT-CTTTGGGGAGGT--GGGTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAGGCTCTCT-----TCCTTTGCA--GTGCAGAATGACCTCTGGCAGCCGGAGTTGTGTTTGTT--------CTGTAGGATTCTGAGGTGGGCCATGGGCAGCTGGAACTGGG-----GAATTTTGCCAATCTCTTTCATATTAGGATTGTCTGCAGAACCAGATATGGAGG------CTTCTAGCAACGTGAGTGCTCCTGTTCTAATGCCCTTAGAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGAGACAAGGCAAGAGAGAAACAGT-----------------GGATGC--TTTTAGGTTCTTTCCCTTCCCAAGCAGTTGTGGACATTGGGCTGA-GGGGAACATTTCCACATTGGCTAAAGGAGCGTCCTCCTCATATTTTGTACATTTTATACCCAA--AATAA-CTCTTCTTGGTATTT-GGGGAAATATTTTCCTCCCCGTCC------------ATTCCAGGAAATGGCTCCAAGTGCCAAGGACAGAGCCAGGGAAGTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGCACGTCTGAGTGGCCCATGCAGAGCGTGGAGGTGGCCGCC----------------ACGGAACC-TGGGTCAATGT-CCCACCCCCG----CTTAGATGCCA-CCAGGGG--CGTGGGAGCCAAGGAG--AGAAGAGGGGCTCCAGGAAGGTAGAGTCCTTGTGTCTTGTGCATCTGTGAACAGCACTGGTATGATTTAAAGGAAAATTGAGCCAAATTTTCCGGCAGTCAGTT-----ACCCCATCCCCACCGGGGTAGGAGTCTGGCAGCCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAATTCTTCTTTGTCCACACAGTTGTCTCAGAGAAACAG--AGAGGTT-GTTTCTGCTTAAAAACAACACACTTGGTGTCTGGGCCCACAGACTCCTTTGCACTTATTCCACGTGTGACAGCCAATGTGCCTCGTTGCTTAGCAGACAGCATGTTACCGTCTTTCCTGCTCAGTTTGTTAG--------------CTCTATGGAATGGAATTTATAATCAATGCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGTGTACATTACATTTGC--TCTGGGG-TGCTCCAGGC--TGGGGGGTTGCCAAGGAAGAGAAGAGAAACCGCAGAGAAGAC---GGGAGGGCAGGGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGCTC---------ATGAAAGGGGCCACGGGCGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGG--AAGCTGAAGGGAATCCTGGCCCACCTGGGTGCTAGAGGGCACATAGGAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACGCTGAAGCATTTTCTGTCTTTATTAAG-------------ACAACTCCGTAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGATGCGACTTTAAGATGGGAGCAAGCGAACCATTGAGGAGGCAGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTTTCatttattcatgcaacagatatttaacgaagccctgccgtgttccaggcctgtgatagatgctggaacaggtacagaga----------tAc-------aggtgtcattaattgatcaggg--caacctctc---cttctgagt--cttgctggagcttcagatgc-ccctcacacagagctcgagggagcctc-aacaattgatcagaagtcaggcaccatggctcacgcatataatcccagcactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctggggcaacatggcaaaaccccatctctattaaaaaaaaaaaaagtaactggatgtgatggtacacacctgtagtcccagctacttgggaggctgagaggtgggagaattgcttgagcccgggaagtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcaagaccctgacacacacacacacacacacacacacacacacacagattagagctgaaacaggagtagaaacctatctg-tatctctgATGA-GATCAGATC---------TTTCTGATGAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAGAGAAAATCACTCACGCT-GGCCCTGTG--TTTTTCAAATTGTTTATTGTGATCAACATTTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCACGGTAAGGGTGAATTTT-ACTTCTTGACACTTATTTCTCTTACATGTATCTATCTGTCTC-----AAATGAAAAATATATTTAGAAAGTTGAAAGCTATCCAAGTGAGTATAAGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGGGAGGGC---------------------------CACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGGCT-AGGAAGGAGCACAGGCGGTGACCATACTCTGGCTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAGCCCTCAACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAGAAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAGGAAAGGGAGGAGAGAAGAGCCTCTTCGTCTCTTGCCTACCACTGGCCAGGCAATTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTGGGTAGGTTAGA-TCTCCCAGGAGGTCCCTACTAAACAGACTTAAGCCCGCAAAATTTTAGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACCAACTATGGCTTTCCCTAACTCCGGAGc------ttggcctggaatgccctgcttcccctctttcccctggggaacgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctccTCCCATCCCCGGAGTCCCT--CTTCCCCTTTGTTCTTTGGGTTCTATGCTTCTTCCCTCATAACTCCCACCAGGTTGTGTTAAAATGAGTTGTTCAAGGTCCTGTCTGTTCCACTAGATTCTGAGCAACTTGGAGAACGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCTTTTCTCATCCCCAAGTCCCTTCCAACTTGGAGTTATgaagaaaggaaggaaggaagggtgggagggaagaaCAGGAGGGGATCCCACAGG-AGAATGTGTATAGGGAGAGGACTCAGACTAGCTAAAGCTTTTCCCTCATAATTAATAGCAAATACCATGTTACCTGAATTTAATTCACAGTAGCATACAAAAGACTCGCTTTGTTCT-------CCCCA---------TTGATGTCATCAGAGG--------------------GCTGTGGG--------------CAGGCCTAATCTTGGCTCAGGAGGCCCTCCAGCCTGGATCTAAAGAGCAGCAGATGggccaggctcggtggctcatgcctgtaatcccagcattttgggaggccgaggcgggtggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcctgtatttccagctacccgggaggctgaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactctagcctgggcaacagagcaagactccgtcaaaaaaaaaataaaaaaataaaaaaataaaaaaaataaaGAGGAGCACACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCTG-CAATGGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACCAGCTTCTTAGGGAGG--TAGGAGGTG---------------GAGGGTGGGGTGC-GGGCCCTGCACACAACTGCCAAGTGAGGATGGGGGTGGG-GTCCACCTGAGGATAAGTAACAGTGAGGCTGGTGCAGAGGACCCAGGTGGAGGTAGACAGCAGAATTTGTGGTGGGGT--GGATGGCAC-ATTATATAAGCCTCTCTTGC------TGCCCTGT---TTACTGAGATTGTTTCAttatcttttttggcttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatcatacctcactgcagcctcgacatcctgggctcaggcaaacctcccaccttggcctcccaagtagctgggaccacaagcgtttgccaccacactcagctatttttatttttattttta--ttttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagcgatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagccACATTTCATCTGTGCAGCTCCAGGGGCTCCACATTCT-ACTCTTCTCATTTCTTCTCCAGGGTACCC----------ATGGCAAGGGATGAGGGT--AGAAGATGGGGCA--GCCAGGCCTTGATTAAAGGAGAAGGAAGGCAGCCTGTGGAGAGG---GCAGCC---C---AGGGAG---TGCAGAGAGAAGTGGGCCATGAGGGAGA---CAGCAGAGTGCAGGCTGCGTCC---CAAATGAGCATACAGCCCACTGTGAGCCCACC--ATCTTCCTAGA-GA--CCCCTCTCCTCTCC-AGGAGCTGCTTCAGTAGCACTCA---------GAGGAAAGAATGATGC--------TGTATCAACATTTCAGCAGCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAA--AACTGCTTTGGAAACTTCT---GGAGAGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCTTTCTTCCACCCCAACCCATGCTCTCCCCATGCT--CTCCTGCCACAGCTGCAGCGGGCCCCTGGGTCCTACATTTGCAG-CCCTTTGTCTCTGAGCT-----CAGACTTCCAATTCCAAGCGGCAGCTGGGCAGGCTCACCAGCATGT---CCAGCCAGTACTAGGACATCAGCAGGAGC----CCAACCACCTCTTTCCAAAATCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACATT-----------------TGCTCCTCAGGGTGCAGAAGGGAAAGCTTTGCCTCCCTTCCTGGTGCTCACTGCCCCTGCGATTCCAGCCCAAGCCCTCCCCGGCTCCTCACC----------CTGGTGTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttcttccacctctgc--------cagggctgc-cctctcctccaccttcacaaactcaattcctacccattctcaggtcccttatcaaatgccatctcctccatgatgcctccctgattccccTGCTGGAaataatggtgataacagctaag--gcattggggttggctacgtgccaggcaaggagttggcactttacatgctttatctcatttcagccacataacatcgacaggt-ggcattatgattcatatcatccccatctgatagccaggaaaactgagtcccagagaggttagc-cactttcctagggccCTGTGCTCTGACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCCAAGGCAT-TTCTTCATTTAAATGTTCTTCCTTGGCCAGGCGCAGTGGCTCAggcccaatgcggtggctcacgcctgtaatctcaacactttgggaggccgaggtgggcagataatctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaaaatgaggctgggcgtgatgactcacacctgtaatcccagcactttgggaggccaaggcaggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaatcctatctctattaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagccaaggttgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggatgaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaacactgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaataaaTGTTCTTCCTTGCAATGAAGTTAAATATGTAAATTCTCAAACCAGTTGCTTAAGGGCACAGTTTTGTTCTTTACCTATATTTTTAACAAATATTTTATGTAAGTAGTTGAC-AAAATCAAATACTGT-GTACACTACCGAGGCTTCCCTGGGAAAGCCATCAG-CCTCTGCCCCATCCCTTCCCACTCCTGATT-CCACTTTCCTGTGTTTCCATATCTTTTTCATGTCTGTTTCTGGCCCACAGTGGGCGATCAATACATGTTAGCCACCAACCATCAAACCTATATTGAGTAATTATGGTATGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaaagtaattgtggtttttaagagtaatggcaaaaacggcagttactttcgcaccaacTATTTGCTGCCTTGAATTATTCCTCCTCTC-CTCATCCCTAAACCCTGCTCCTCCCAGCCATTCTTCCTCCCCTTCTTGGGCCATGGCCAGGCCCCACCCAGGTACTAAGACTCAGGTGAACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTT--GGCATGTGTTAAGtcggttagcattaagtttggctgcatttagcagagacccaaaagaacagtgccttttaaaaggcagaggttatgtctctcacacacacccagcacaagtccaag-------------------------accagcatggcatctcagctccatcaa--cctcaggaaccgagctcctgcagctccctgccctgcagttgataaggtgaggtctttgtcctcctggttcaagatggtgctagaatgttggctaccatatctatagtccaggcatcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacaggttcctgagagctggcacaggacacttctgcttatatttcactggccagaacttagtcacatggtcacacctagttgggagactctgagaagtaa----agtatttattctagatggccatatccctacc-taagacttggagttttctatgactggggaagaacggaagacaagatattgggaaagactagcagcctctactaAAAGGGTGATCtgtgttgatgtgcgtgtgtgtgtgatgtttgtatg---agcatgtgtgt-tatgtgttgt--gtgtTGGTGGGGCA--GATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCCATAGGTTTCTCCTAAACCTGGCCT-CTCCTATTAGGCAGCCTTACTCAGCGGCAGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGTGGCCATTATTTGAGAGTGAC-----TATGACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAGGAGGGGGAAAGGAAAGGATGCTTTAAGGAAGCATCTTGCCAGGAGACACAAAGCTAACAAGAGTGGAGCCTGCAG----------------------------CTGGAGCCGCAGAGCCTAATCACTACACCCGCCCATCTCTGCTAGGGTTTCATGACTTCGTATCGGGGATTAGCAGTATTTAACTCTGTTGCACAAACATTTGGTGTA-----TTATTCAGGTAACAAGTAGCTAATAGAGGAAGTTTTACTTTTTTAAGACATAA--------------------ATTTGCCTTTTCCCAAATTACTTGGTACATAGTAC-TTTTCATGTTTGAAGTTGAGATGTGGGTACAATACCATAGCTTTATTCCAGAGCAGGGTATTTGTTTCCAAATGCCATGTTCCCAGCAGCTGCCCTTGACTGGGAATTGGGGTG-----TGATTTGGGCTTTTCCTTAAATCCTTGA-----GGAGCTGGA---GGGGTGGGTGGCTCGCACTCCTGCTTTctgg---------atctgaatc--------------ctgactctgtcatggacctgtt-tgactttgggcaagttgactcctattcctgagccccatat-ttttctcttctgtgaaattcagattaaaaA-AACATGGCTTTGATCAAACATTATAAATAATATATAGACAGACTGCTTGTTTTTATTGTATTGCCAG-AAATGAATCCTACTAATATTGCCATCTATGGACAGAAAATGTATTACCTGTCTTCATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTTACTGCCATCTCCAGAACCGTCATCCTAATATTTACTTACAT-TTTATTATTATTTCAGGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTATTACCTTT-TGCCTCATGTATCTCATTAAAATTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAGTTTCAAGCGTTCTGGGTGaatgtgttatgc--tctctcccgccaccatgtctttataccccctgatttctcagccact-atggcaaccactttctactcttagtagcccatatttag--tccaatccccagctcaggagacacttcttccaggg--agccccctgtgccttccagtagtatcttgtacctgccctttttgcaaagctctttcctcctggcttagaatggcccattgacctgtttgtttctcctattaaactgtaagccactcgagggtagagagcatctgttgttcaccattgcatcctcggtgctgagcactgcgtctgacatattatttagaaggtcagtaagtgctagtgggatTCAGGCTCCCAGTGGGTGGGAGAGAAAGGACGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGA-GTATCAGCAGGCTGGTGTGA-GGGAGAAATGCAGAGGATGGGTGAGTAGCA-----TAATCGCTAATGAT-AGGGTAATGATAGAGCACATTTCACAACACCTTt-aagccctttcacgtgcatcagataatttgatcctcataaaagcctagagatagatatattacagg-gatgaaggtggagtattttgtggttatgtgatatg-tttaaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatctttccCTCG-AGCATGCAATGAAGTCTACATCATCCCTACCATGTCCATTTGATCACACCCTGGCCTCACAGCTCTGTGGTCTACAGGATACCTCATGGTGGTTTTATTGACCAGACAATAATCCTCTTTCTAAGGGGATGCATTTCATTAATACATATGTAGATCATGAATTGTCTTTGACTTTGAGGGGATGGTAGC----CAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGGTAATGTGGTTGGTAATGTGAAGA-TGGGTGTATTCTGAGATACCGGCTCCTTGCAGTGTGTGGTTCCTTCTGTTTTCAGGCCC------AAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCACACACGGTAAGGAG---AGTATGCGGGGACAAA---GTAGAACTGCAGCCAGCCCAGCACTGGCTCCTAGTGGCACT-GGACC-CAGATAGtccaagaaacatttattgaacgcctcctgaatgccaggcacctactggaagctgagaaGGATTTGAAAGCACAGGGC-TCCACTCTTTCTGGTTGTTTCTTTTGGCCCCTCTGCCTGCTGAGATTCCAGGGGTTAGTGG--------------------------------------------------------TTCTAATTCTAAACCACTCCAAGAACATTTGATTTTGCTACATGTTTCCATTTAAAAATCATAGGATTTGggctgggtgtggtggcttgtacctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataaaaaatgttagctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgctccagcctgggtgacagagtgagaccttgtctcaaaataaataaataaataaataaaAGTCATAGGATTTgatcaggcatgatgggtcacatctgtaagcccattgctttaggaggccaaggtaggaggatcagttgaggccaggagttcaagaccagcctgggcaacatggcaagacctctctctctaatttttaaaaaaataaaaaTTAAAGATAAGAAAAAAATCATAGGATTCTCATGAGGCCTCACGTGCTTATTTTCAACCTACCAAGGGGAAACCCAGGCCTCAGCGATTAGCTGAGC----------CACATGCAGGCACAG------------------------CCACTG-----TCTCTTTCCTTCCTGTCCCCTCTGTCCCCACCTTCTGCGCTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAAGTTCCTTG----TGTCCCATTGGCAGGAA-CAAGACCCCCAGAAGCATCTCCTCAGGGC------CTCTA-----TCCCATCTC-TAGATGTGCTTGTCATTAGG-Gttct-------------tgtagttccagctgatctctggccctgccgctcaaagatacccaaaagagcgagtctaccctttttcacattcaaccctctactgatttgcaaatagcagtcagtgcccaccctggtcttttctctggggtccagcaggcctagaccttcagccattttcctgatgaGGTCTGTAtttgaaattaggaagattaagtttgaatcttcacacttctgat----gtctgtgagatcttcagcaagttccttact--gtctttaagccttgt-tttcatcatctggataatggggatatcacacacta-ttcacaaggttgttatgaggcctaaattagctaaagcaATTGAATCCTCCTTACCCCCTGCATGGAGCTCTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTTATGGTA-GTCTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGATAGAGTC-TTGGGCATTTTATA-GATAAAAACTCTT--GTCTCCtttaaaaataataaaaaaaaattaGCTGGGCATATTAGCCACTCAGCAAGACTGCACGTGATAGATCCCGAGTGCCCCACCTTGGGTGGTGTAATACACAATATCACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAGATG-GATGGGGAGAGCC--TCCCGG-AACTGGAGTCACTGGAGCA----------------------------GGGTTGGGGGGCCTCACTGAGGGTACGGCCTTGATCTCTAAGGAGGAGGGACTGCCTGGAAAAGC-TGACTGGGAGGGAGGACTCGGCTGGGGGTAGAAGGGA----------CTAGGGAAGGCTGGGGGTGGGGGTGCTTATGGAGGACCTCAGATGCCTGGGGAACAGACTCCACTAAATAAAACATATGAAACCATGGCTGGTTCTTCAGCAGAGGCCATGTAGAGAAAGGAATGACCTAGGAAAGTTGGCCTGGAAGTGGAGGGAAGGATGGTGTGGGAAAAGCAGGAA--------TCTCGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGG-ATACAAGGGCCTGAGCCAAAGTGGTGAGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACCCTCCATGCCCACGGGGAAGGCAGAGGGCTCT-GAGAGCGA--TTCCTCCCACATG-CT-GAGCACTTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTTTGGACTTCATTCCTGGGCTCCACCCCATCCTGACCTTATCCAAGATGGACCAGACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACGTGATCCAAATATCCAACGACCTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAGGTCACTCTTCCTGCAAGGACTACGTTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGATTGAAGAGCATTGCATGGACACCCCTTATCCAGGACTCTGTCAATT--TCCCTGACTCCTCTAAGCCACTCTTCCAAAGGCATAAGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTCACCAGGAAGGGGG-TCCACCC-AGCAAAGAGTGGGCTGCATCTGGGATTCCCACCAAGGTCTTCAGCCATCA---ACAAGAGTTGTCTTGTCCCCTCT-TGACCCATCT-----------------CCCCCTCACTGAATGCCTCAATGTGACCAGGGGTGATTTCAGAGAGGGCAGAGGGGTAGGCAGAGCCTTTGGATGACCA--GAACAAGGTTCCCTCTGAGAATTCCAAGGAGTTCCATGAAGACCACATCCACACACG--CAGGAACTCCC--AGCAACACAAGCTGGAA---GCACATGTTTATTTATTCTGCATTTTATTCTGGATGGATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCAGCCAGGGCCAGGGGTCTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTC-TGGCTGAGCTGAACCCA---TTTTGAGTGACT----CGAGGGTTGGG-TTCATCTGAGCAAGAGCTGGCAAAGGTGGCTCTCCAGTTAGTTCTCTCGTAACTGGTTTCATTTCTACTGTGACTGATGTTACATCACAGTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCCAAGGACCAGGTTATTTTAAAA---AGATTTGTTTTGTCAAGTGTCATATGTAGGTGTCTGCACCCAGGGGTGGG-GAATGTTTGGGCAGAAGGGAGAAGGATCTAGAATGTGTTTTCTGAATAACATTTGTGTGGTGGGTTCTTTGGAAGGAGTGAGA-TCATTTTCTTATCTTCTGCAATTGCTTAGGATGTTTTTCATGAAAA------------TAGCTCTTTCAG-GGGGGTTGTGAGGCCTGGCCAGGCACCCCCTGGAGAGAAGTTTCTGGCCCTGGCTGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAAAGGGCTGAAAGCCATTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGGGAGTGGTCTTTCCTATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAGCAGGGGTCCTTGGTGT-GACCCTCTGAATGGTCCAGGGTTGATCACACTCTGGGTTTATTACATGGCAG-----TGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCC-AAGCAAGGCCAAAATTACCAAAAATCTTGGGGGG--TTTTTACTC-CAGTGGTGAAGAAAACTCCTTTAGCAGG-TGGTCCTGAGACCT-GACAAGCACTGCTAGGCGAGTGCCAGGACTCCCCAGGCCAGGCCACCAGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTCTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAAC-TTTAAGactgagcacctgcttcatgctcagccctgactggtgctataggctggagaagctcacccaataaacattaagatt-gaggcctgccctcagggatcttgcattcccagtggTCAAACC-GCACTCACCCATGTGCCAAGGTGGGGTA-TTTACCACAGCAG--CTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGAGGGGGGCCGTGCCCAGGGGCCCACAGG-GAACCCTGCTTGCACTTTGTAACATGTTTA-----CTTTTCagggcatcttagctt---ctatta-----tagccacatccctttga---aacaagataactgagaatttaaaaataagaa-----aata--TGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAAATGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCATGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
diff -r 000000000000 -r 76373359fce2 test-data/2.fasta
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2.fasta	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,11 @@
+>Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;
+gttcgatgcc taaaatacct tcttttgtcc ctacacagac cacagttttc ctaatggctt
+tacaccgact agaaattctt gtgcaagcac taattgaaag cggttggcct agagtgttac
+cggtttgtat agctgagcgc gtctcttgcc ctgatcaaag gttcattttc tctactttgg
+aagacgttgt ggaagaatac aacaagtacg agtctctccc ccctggtttg ctgattactg
+gatacagttg taataccctt cgcaacaccg cgtaactatc tatatgaatt attttccctt
+tattatatgt agtaggttcg tctttaatct tcctttagca agtcttttac tgttttcgac
+ctcaatgttc atgttcttag gttgttttgg ataatatgcg gtcagtttaa tcttcgttgt
+ttcttcttaa aatatttatt catggtttaa tttttggttt gtacttgttc aggggccagt
+tcattattta ctctgtttgt atacagcagt tcttttattt ttagtatgat tttaatttaa
+aacaattcta atggtcaaaa a
\ No newline at end of file
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needle_out.fasta
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needle_out.fasta	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,676 @@
+>Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------------------------------gtt-
+-c----------gatgccta-aaataccttcttttg-----tcccta-------cacaga
+-------------------------ccac-------------------------------
+-------------------agt--------------------------------------
+--tttc-c--------------------------taatgg-ct-----ttacaccgacta
+gaaattct-----------------------------------------------tgtgc
+aa-gcac---------------------taattga--aagc-------------------
+-----------ggt--tgg-------------c-ctagagtgttac--------cggttt
+gtat---------------------------agc--------------tgagc-----gc
+-----------------gtctcttgcc--ctgatcaaaggtt-cattttctctactttgg
+aagacgttgt--------ggaa-----gaatacaacaagtacgagtc-----tctcc---
+-cc--------cctgg--tttgctgat----------------tactgg-----atac--
+-agttgtaatac-----ccttc-----------gcaac----------------------
+-ac----------cgcgtaact------atctatatg----------------------a
+att------attttccct-------------ttatt--------atatgt----------
+----agtaggt-------------tcgtctttaatctt----------------------
+-cc----------------------ttta---gcaag-----------------tctttt
+--------------------------------------------------------actg
+tt----ttc--------------------------gacc--------tcaatgttca---
+------tgttc-----tt-----------------------------aggttg------t
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+------cagttt----aatcttcgttgtt-tc----ttc------tta---------aaa
+t----attt------att----catg-----------------gtttaatttt------t
+ggtt-----------------------------tgtact----tgt---------tcagg
+ggcc----------agttc---------------------------attat-----ttac
+tctgtttgtat--ac----agcagtt-----------ctttt---atttttagtatg---
+---at---tttaat---ttaaaacaatt-----------cta---atg---gtca-----
+-----------aaaa---------------------------------------------
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+>hg17
+gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccag
+gctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagt
+caggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagcca
+ctaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTG
+ACTGGAGGAAGAGATG-CTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGA
+TGTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCATTTTTCATTAT
+TTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGATATTTGGggaaattttgtatagacta
+gctttcacgatgttagggaattattattgtgtgataatggtcttgcagttacac-----a
+gaaattcttccttattttttgggaagcaccaaagtagggataaaatgtcatgatgtgtgc
+aatacactttaaaatgtttttgccaaaataattaatgaagcaaatatggaaaataataat
+tattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtat
+gtttaaatttttcatttaaaaaaaaactttgagctagacaccaggctatgagctaggagc
+atagcaatgaccaaatagactcctaccaac---tcaaagaatgcacattctC-----TGG
+GAAAC-ATGTTTCCATTAGGAAGCCTCGAATGCAA----T--GTGACTGTGGTCTCCAGG
+ACCTGTGTGATCCTGGCTTTTCCTGTTCCCTCCGCATCATCACTGCAGGTGTGTTTTCCC
+AAGTTTTAA-ACATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGG
+TACATGAATATAACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCA
+attcagcaaattttccctgggcacccatgtgttcttggcactggaaaagtaccgggactg
+aaacagttgatggcccaatccctgtcctcttaaaacctaagggaggagaTGGAAAGGGGC
+ACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA
+AGGATGGAGAGGCCCTAGTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAG
+TTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATG
+TATGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggtagaaaacat
+tttaggctttctaagccaaggcaaaattgaggatattacatg-ggtacttatacaacaag
+aataaacaatttacacaatttt--ttgttgacagaattcaaaactttatagacacagaaa
+tgcaaatttcctgtaattttcccatgagaactattcttcttttgttttgttttgcgacAG
+GGTTGCGCtgatcctcccgcctcagtctccctaagtgctgagatgttgcaggaagtcagg
+gaccccgaacagagagatcggctggagccgtggcagaggaacataaattttgaagatttc
+a-ttttaatatggacacttatcagttcccaaataatacttttataattttt--tatgcct
+gtctttgctttaatctcttaatcctgttatcttcataagctaaggatgtacgtcacctca
+ggaccactgtgataattgtgttaactgtacagattgattgcaaaacatgtgtgtttgaac
+aatatgaaatcagtgcaccttgaaaaagagcagaataacagcaatttttagggaacaagg
+gaagacaactataaggtctgactgcctgcggggtcgggcaaagggagccatatttttctt
+cttgcagagagcctataaatagacctgcaagtaggagagatattgctaatttcttttgct
+agcatggaatattaatattaacaccctgggaaaggaatgcattcctggggggaggtctat
+aaatggccgctctgggaatgtctatcctacgcaatggagataaggactgagatacgccct
+ggtctcctgcagtaccctcaggcttactagggtggtgaaaaactccgccctggtaaattt
+gtggtcagaccagttttctgctctcgaacactgttttctgttgtttaagatgtttatcaa
+gacaatacgtgcaccgctgaacacagacccttatcagtagttctcctttttgccctttga
+agcatgtgatctactccctgttttacaccccctcaccttttgaaacccttaataaaaaac
+ttgctggtttgaggctcaggtgggcatcacagtactaccgatatgtgatgtcacccccgg
+cggcccagctgtaaaattcctctctttgtactctctctctttatttctcagccagctgac
+acttatggaaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataTCT
+GGTGCCCAACGTGGGAtactgagattacaagcatgagccactgcatctggcctcttcttt
+tgatttttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattac
+caaacccggcagtggcaggctcggttcaccaacgtcatttgcagttccccgCTTTATGTT
+ATGGgttttgttttgttttgttttttttattgagacagagtttcactcttgttgcccagg
+ctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccat
+tctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggcta
+attttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcc
+tgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagct
+accacgcctggctGGGTTGGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCTGCGCA
+Gtggggaccagaataggcctgggttcctagcccattgctattccttaccagctgtggatt
+ctaaggaaagtcatttaacctcgctggaccttagattcctcatccctgaaGCCCAAGGGT
+aaaacaaaacaaaacaaaacaaaacaaaccaaCCCATCATGTAAAGCGGGGAACTACAAA
+CGATACAGGTGAAACATGCCTACCACACCACTCACAGGCTATGATGACAAAAACGTGGCT
+ACATCTGGGACCACCCCCCAACCCCCACTTTGTACGTAGGAAATACGGAGTTGAGGATGG
+AGACCCACAGTATGTCCAGAGTGTCCCCAAAGGCCACAGTGCCCGCCTGGAGCCCTCCAG
+AGAGCGTGCACTCCCTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGGCTTGGAACTCGA
+TTCTCCGCGTGCCAGAGAAGGGGTGGGACTTCAGAACCCCCAACCCCGCAATCTGGGTCG
+GGGAGCCTGGCGCACTGCGGGCCGCTCCCTCTAACCCTGGGCTTCCCTGGCGTCCAGGGC
+CGTCGGGGCCGAGTCCCGATTCGCTCCCACCCCGAAGCCGCGCCAGGACCAACGAGGGCG
+CAGCCGTATGCCCCAGCCCGCTCCGCGGAGCCCCTCACAGCCAcccccgccccgaccgcg
+ccccgcgcggcTCGAAGCACCTTCCCAAGGGGCTGGTCCTTGCGCCATAGTCGCGCCGGA
+GCCTCTGGAGGGACATCAAGGATTTCTCGCTCCTACCAGCCACCCCCAAATTTTTGGGAG
+GTACCCAAGGGTGCGCGCGTGGCTCCTGGCGCGCCGAGGCCCTCCCTCGAGGCCCCGCGA
+GGTGCACACTGCGGGCCCAGGGCTAGCAGCCGCCCGGCACGTCGCTACCCTGAGGGGCGG
+GGCGGGAGCTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGATC
+GGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGTAGGAATCGCAGCGCCAGCGGT
+TGCAAGGTAAGGCCCCGGCGCGCTCCTTCCTCCTTCTCTGCTGGTCTTTCTTGGCAGGCC
+ACAGGGCCCCACACAACTCTGGATCCCGGGGAAACTGAGTCAGGAGGGATGCAGGGCGGA
+TGGCTTAGTTCTGGACTATGATAGCTTTGTACCGAGTTCTAGCCAGATAGAAGGTTACCG
+GGAGCTGGGGAGCGTTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCAGGACCTT
+GCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGACCCACCAACCTGGTGGCATTCGCAGA
+GCTGAGATGCATTGGAAATTGCCTTGGGCACATCCCCAAAGATCAGGATGTCCCACCCCA
+GTCTGAAGGAGATAAAGTTGGGGGTAGGAGAGACGCAGATGCAAGTGATCAGTCTCAGTC
+CCAGACATTGCCTTGCTCTGCGGGTAGGAATTCAGGATTCATTTTCCAGGGAAGTTCCTG
+ACCTCTGAATGAGAGGGGCTGTGTAAGGCCAATGCCTGGGAGGAAGGCAAGGATGAGTAG
+AGGTGGGGGGAAACAAGTGTCAGGAAGACTCAAAATCTTCCAGAGAAATTGTGCAGGGTC
+TTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTCTTTGCAATGCATACAATGAGGT
+GTCTCTGGGGGTCAGAACTGGTTATTAGGGAACTTCTAGCCAGGACTGCTAAATACGCGC
+TGTTGGCCCACCAGGCTCACCTATAGCCTTCCTTCAGTCTGGGCTTGGTTTGGATTTCAC
+TGTGGGTGCCATCGCCTTTACACTCCTGTTTCTATAGTTTAAAGATAGTGGTGCTTTGGG
+AAAGTGACTCCTTAAATACAGTTAGGTCCAAGTGAGACAAGTGGCCTGGCTGTCATTTCA
+GAATAGCAGCTTCCAAGAGGTGATTAATTTCTGTTGGAAGGGTGATCTTTGGGGAGGTGG
+GTGAAGAGCAGAGACTTGGTGGTACCGTTCCAGGAGCACAGGCTCTCTTCCTTTGCAGTG
+CAGAATGACCTCTGGCAGCCGGAGTTGTGTTTGTTCTGTAGGATTCTGAGGTGGGCCATG
+GGCAGCTGGAACTGGGGAATTTTGCCAATCTCTTTCATATTAGGATTGTCTGCAGAACCA
+GATATGGAGGCTTCTAGCAACGTGAGTGCTCCTGTTCTAATGCCCTTAGAAACAAGAAGG
+CCACACTGATCATTTCTCTCACTTAGGCAGGGAGACAAGGCAAGAGAGAAACAGTGGATG
+CTTTTAGGTTCTTTCCCTTCCCAAGCAGTTGTGGACATTGGGCTGAGGGGAACATTTCCA
+CATTGGCTAAAGGAGCGTCCTCCTCATATTTTGTACATTTTATACCCAAAATAACTCTTC
+TTGGTATTTGGGGAAATATTTTCCTCCCCGTCCATTCCAGGAAATGGCTCCAAGTGCCAA
+GGACAGAGCCAGGGAAGTTGCAATGAATTCCTGCCCGTCAGCCCCAGGCAGATGCCTTGC
+ACGTCTGAGTGGCCCATGCAGAGCGTGGAGGTGGCCGCCACGGAACCTGGGTCAATGTCC
+CACCCCCGCTTAGATGCCACCAGGGGCGTGGGAGCCAAGGAGAGAAGAGGGGCTCCAGGA
+AGGTAGAGTCCTTGTGTCTTGTGCATCTGTGAACAGCACTGGTATGATTTAAAGGAAAAT
+TGAGCCAAATTTTCCGGCAGTCAGTTACCCCATCCCCACCGGGGTAGGAGTCTGGCAGCC
+GCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAATTCTTCTTTGTCCACACAGTTG
+TCTCAGAGAAACAGAGAGGTTGTTTCTGCTTAAAAACAACACACTTGGTGTCTGGGCCCA
+CAGACTCCTTTGCACTTATTCCACGTGTGACAGCCAATGTGCCTCGTTGCTTAGCAGACA
+GCATGTTACCGTCTTTCCTGCTCAGTTTGTTAGCTCTATGGAATGGAATTTATAATCAAT
+GCCCATACCAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGTGTACATTA
+CATTTGCTCTGGGGTGCTCCAGGCTGGGGGGTTGCCAAGGAAGAGAAGAGAAACCGCAGA
+GAAGACGGGAGGGCAGGGCAGGGGTCTCTGAGAAGGGGAGGGGTCCCAGAGTGCAGGAGC
+AGGAGCCAGGCTCATGAAAGGGGCCACGGGCGGGAGTATCCAGGGACGGCAGTCAAGATG
+GAGCACAGCTTAGGAAGCTGAAGGGAATCCTGGCCCACCTGGGTGCTAGAGGGCACATAG
+GAAGTGCAGGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACGCTGAAGCATTTT
+CTGTCTTTATTAAGACAACTCCGTAAGAATTCCTGCTGGGCCAAAGTGAATTCTAGGATG
+CGACTTTAAGATGGGAGCAAGCGAACCATTGAGGAGGCAGGTTACCCTAGTTAGCCAATG
+CAGATCGAGAATGGGAAATCTTTCatttattcatgcaacagatatttaacgaagccctgc
+cgtgttccaggcctgtgatagatgctggaacaggtacagagatAcaggtgtcattaattg
+atcagggcaacctctccttctgagtcttgctggagcttcagatgcccctcacacagagct
+cgagggagcctcaacaattgatcagaagtcaggcaccatggctcacgcatataatcccag
+cactttgggaggccaaggcaggtggatcactggagcccaggagttccagatcagctgggg
+caacatggcaaaaccccatctctattaaaaaaaaaaaaagtaactggatgtgatggtaca
+cacctgtagtcccagctacttgggaggctgagaggtgggagaattgcttgagcccgggaa
+gtcgggggtccagtgagccttgatcacaccactgcactccagcctgagtgacagagcaag
+accctgacacacacacacacacacacacacacacacacacagattagagctgaaacagga
+gtagaaacctatctgtatctctgATGAGATCAGATCTTTCTGATGAACAGAAAGAATGTA
+ACCCCTGTACTCACACCCTCTCTGCTGGTTACATATGTTAACACGATTTCTCAAATGAGG
+CTTTTGGTTGCAAATAAGAGAAAATCACTCACGCTGGCCCTGTGTTTTTCAAATTGTTTA
+TTGTGATCAACATTTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCACGGTAAGG
+GTGAATTTTACTTCTTGACACTTATTTCTCTTACATGTATCTATCTGTCTCAAATGAAAA
+ATATATTTAGAAAGTTGAAAGCTATCCAAGTGAGTATAAGAAAAGAGTATCTCACCCTGA
+AGGCTAAGGACAGGGAGGGCCACCAGGCCTCACGAGGACCCAGGAACCACAAAGAAGGCT
+AGGAAGGAGCACAGGCGGTGACCATACTCTGGCTCAGTGGCTATGTGGGCTCTGGTCTCT
+CTCAGCTGTTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAGCCCTCAA
+CAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGAGAAGTTGATTGA
+CCCAATCAGGGTCAGGAGAAGGAAGGGAGGAGGAAAGGGAGGAGAGAAGAGCCTCTTCGT
+CTCTTGCCTACCACTGGCCAGGCAATTGTAGCCAAGGGGGCTGGAGTGTAAATGCAAACA
+TAGCCATCAAGGGTtgtgtatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTT
+GGGTAGGTTAGATCTCCCAGGAGGTCCCTACTAAACAGACTTAAGCCCGCAAAATTTTAG
+CTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCAAACCAACTATGG
+CTTTCCCTAACTCCGGAGcttggcctggaatgccctgcttcccctctttcccctggggaa
+cgcctgtccttcaggcctcagttcacacactgcctcccttgcaaagctctccTCCCATCC
+CCGGAGTCCCTCTTCCCCTTTGTTCTTTGGGTTCTATGCTTCTTCCCTCATAACTCCCAC
+CAGGTTGTGTTAAAATGAGTTGTTCAAGGTCCTGTCTGTTCCACTAGATTCTGAGCAACT
+TGGAGAACGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTCTTTTCTCATCCC
+CAAGTCCCTTCCAACTTGGAGTTATgaagaaaggaaggaaggaagggtgggagggaagaa
+CAGGAGGGGATCCCACAGGAGAATGTGTATAGGGAGAGGACTCAGACTAGCTAAAGCTTT
+TCCCTCATAATTAATAGCAAATACCATGTTACCTGAATTTAATTCACAGTAGCATACAAA
+AGACTCGCTTTGTTCTCCCCATTGATGTCATCAGAGGGCTGTGGGCAGGCCTAATCTTGG
+CTCAGGAGGCCCTCCAGCCTGGATCTAAAGAGCAGCAGATGggccaggctcggtggctca
+tgcctgtaatcccagcattttgggaggccgaggcgggtggatcacgaggtcaggagtttg
+agaccagcctggccaagatggtgaagcctcgtctctactaaaaatacaaaaattagccag
+gtgcggtggtgggcgcctgtatttccagctacccgggaggctgaggaggctgaggcagga
+gaatcgcttgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcactct
+agcctgggcaacagagcaagactccgtcaaaaaaaaaataaaaaaataaaaaaataaaaa
+aaataaaGAGGAGCACACATCTCTGCCCATCCTAACTCCCACTTTGACATTGAGGTCCCC
+AGGATGGAGGGTCTGCCTCCATCTGCCTTGTCCCCTGCAATGGTGGGAAGGTGATGGAGC
+TCAAGTCTAGAGGCCACCAGCTTCTTAGGGAGGTAGGAGGTGGAGGGTGGGGTGCGGGCC
+CTGCACACAACTGCCAAGTGAGGATGGGGGTGGGGTCCACCTGAGGATAAGTAACAGTGA
+GGCTGGTGCAGAGGACCCAGGTGGAGGTAGACAGCAGAATTTGTGGTGGGGTGGATGGCA
+CATTATATAAGCCTCTCTTGCTGCCCTGTTTACTGAGATTGTTTCAttatcttttttggc
+ttttgtttttaagagatggggtcttgctgtgtcacacaggctggagtgcactgtgtgatc
+atacctcactgcagcctcgacatcctgggctcaggcaaacctcccaccttggcctcccaa
+gtagctgggaccacaagcgtttgccaccacactcagctatttttatttttatttttattt
+tttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactcctgggctcaagc
+gatcctcctgccttggcctcccaaagccctgggattataggctgagccaccacacccagc
+cACATTTCATCTGTGCAGCTCCAGGGGCTCCACATTCTACTCTTCTCATTTCTTCTCCAG
+GGTACCCATGGCAAGGGATGAGGGTAGAAGATGGGGCAGCCAGGCCTTGATTAAAGGAGA
+AGGAAGGCAGCCTGTGGAGAGGGCAGCCCAGGGAGTGCAGAGAGAAGTGGGCCATGAGGG
+AGACAGCAGAGTGCAGGCTGCGTCCCAAATGAGCATACAGCCCACTGTGAGCCCACCATC
+TTCCTAGAGACCCCTCTCCTCTCCAGGAGCTGCTTCAGTAGCACTCAGAGGAAAGAATGA
+TGCTGTATCAACATTTCAGCAGCTCATCTTTTAACTCTAAGAAAATGGCAGCTCCTAAAT
+GTTCAAAACTGCTTTGGAAACTTCTGGAGAGAGGTTTTGCAGCTCAGGCAGACAGCTGAT
+CGCGGCCTTTCTTCCACCCCAACCCATGCTCTCCCCATGCTCTCCTGCCACAGCTGCAGC
+GGGCCCCTGGGTCCTACATTTGCAGCCCTTTGTCTCTGAGCTCAGACTTCCAATTCCAAG
+CGGCAGCTGGGCAGGCTCACCAGCATGTCCAGCCAGTACTAGGACATCAGCAGGAGCCCA
+ACCACCTCTTTCCAAAATCTCTCCTCATGTCTCTCCTAGTTTCCATCTCCATCCTTCTAG
+TCAGCCAGGCTGAAAACATTTGCTCCTCAGGGTGCAGAAGGGAAAGCTTTGCCTCCCTTC
+CTGGTGCTCACTGCCCCTGCGATTCCAGCCCAAGCCCTCCCCGGCTCCTCACCCTGGTGT
+CAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttcttccacctctgccagggctgcc
+ctctcctccaccttcacaaactcaattcctacccattctcaggtcccttatcaaatgcca
+tctcctccatgatgcctccctgattccccTGCTGGAaataatggtgataacagctaaggc
+attggggttggctacgtgccaggcaaggagttggcactttacatgctttatctcatttca
+gccacataacatcgacaggtggcattatgattcatatcatccccatctgatagccaggaa
+aactgagtcccagagaggttagccactttcctagggccCTGTGCTCTGACTCAAGCATAG
+CTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCATGACTTTCTTTGCTGAGTCACCC
+AAGGCATTTCTTCATTTAAATGTTCTTCCTTGGCCAGGCGCAGTGGCTCAggcccaatgc
+ggtggctcacgcctgtaatctcaacactttgggaggccgaggtgggcagataatctgagg
+tcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaa
+aaaaatgaggctgggcgtgatgactcacacctgtaatcccagcactttgggaggccaagg
+caggtggattacatgaggtcaggagttcgagaccagcctggccaacatggtgaaatccta
+tctctattaaaaatacaaaaaattagccaggcatggtggcaggcacctgtaatcccagct
+acttgggaggctgaggcaggaaaatggcttgaacccgggaggtggaggttgcagtgagcc
+aaggttgcaccattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaagaa
+aaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagctactcaggaggat
+gaagcaagagaattgcttgaacccaggaggcagagattacagtgagctgagatcacaaca
+ctgcactccagcctaggtaaagaacaagactccatctcaaaaataaataaataaaaataa
+aTGTTCTTCCTTGCAATGAAGTTAAATATGTAAATTCTCAAACCAGTTGCTTAAGGGCAC
+AGTTTTGTTCTTTACCTATATTTTTAACAAATATTTTATGTAAGTAGTTGACAAAATCAA
+ATACTGTGTACACTACCGAGGCTTCCCTGGGAAAGCCATCAGCCTCTGCCCCATCCCTTC
+CCACTCCTGATTCCACTTTCCTGTGTTTCCATATCTTTTTCATGTCTGTTTCTGGCCCAC
+AGTGGGCGATCAATACATGTTAGCCACCAACCATCAAACCTATATTGAGTAATTATGGTA
+TGTCAGGCACTATGCTCAATGAAATTGTAttaggcttgtacaaaagtaattgtggttttt
+aagagtaatggcaaaaacggcagttactttcgcaccaacTATTTGCTGCCTTGAATTATT
+CCTCCTCTCCTCATCCCTAAACCCTGCTCCTCCCAGCCATTCTTCCTCCCCTTCTTGGGC
+CATGGCCAGGCCCCACCCAGGTACTAAGACTCAGGTGAACCAAGGAAGACTTAATGCCCA
+CTCTTTTCTGATGCCCATGTTGGCATGTGTTAAGtcggttagcattaagtttggctgcat
+ttagcagagacccaaaagaacagtgccttttaaaaggcagaggttatgtctctcacacac
+acccagcacaagtccaagaccagcatggcatctcagctccatcaacctcaggaaccgagc
+tcctgcagctccctgccctgcagttgataaggtgaggtctttgtcctcctggttcaagat
+ggtgctagaatgttggctaccatatctatagtccaggcatcagaatggagcaagggatga
+aaaaggaagagatgaaggcacacgacaggttcctgagagctggcacaggacacttctgct
+tatatttcactggccagaacttagtcacatggtcacacctagttgggagactctgagaag
+taaagtatttattctagatggccatatccctacctaagacttggagttttctatgactgg
+ggaagaacggaagacaagatattgggaaagactagcagcctctactaAAAGGGTGATCtg
+tgttgatgtgcgtgtgtgtgtgatgtttgtatgagcatgtgtgttatgtgttgtgtgtTG
+GTGGGGCAGATTCTTGCGAGCACTTTGGTCTCAGATGGACCTGCTACCAGTTCTCTCTGC
+AGACCCCCATAGGTTTCTCCTAAACCTGGCCTCTCCTATTAGGCAGCCTTACTCAGCGGC
+AGCTTCTCAGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGCAT
+ATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAGGTATTAGAGGGT
+GGCCATTATTTGAGAGTGACTATGACCACAGTTAATCTGGTAATAAATTCTCTTGGGTAG
+GAGGGGGAAAGGAAAGGATGCTTTAAGGAAGCATCTTGCCAGGAGACACAAAGCTAACAA
+GAGTGGAGCCTGCAGCTGGAGCCGCAGAGCCTAATCACTACACCCGCCCATCTCTGCTAG
+GGTTTCATGACTTCGTATCGGGGATTAGCAGTATTTAACTCTGTTGCACAAACATTTGGT
+GTATTATTCAGGTAACAAGTAGCTAATAGAGGAAGTTTTACTTTTTTAAGACATAAATTT
+GCCTTTTCCCAAATTACTTGGTACATAGTACTTTTCATGTTTGAAGTTGAGATGTGGGTA
+CAATACCATAGCTTTATTCCAGAGCAGGGTATTTGTTTCCAAATGCCATGTTCCCAGCAG
+CTGCCCTTGACTGGGAATTGGGGTGTGATTTGGGCTTTTCCTTAAATCCTTGAGGAGCTG
+GAGGGGTGGGTGGCTCGCACTCCTGCTTTctggatctgaatcctgactctgtcatggacc
+tgtttgactttgggcaagttgactcctattcctgagccccatatttttctcttctgtgaa
+attcagattaaaaAAACATGGCTTTGATCAAACATTATAAATAATATATAGACAGACTGC
+TTGTTTTTATTGTATTGCCAGAAATGAATCCTACTAATATTGCCATCTATGGACAGAAAA
+TGTATTACCTGTCTTCATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATT
+TTACTGCCATCTCCAGAACCGTCATCCTAATATTTACTTACATTTTATTATTATTTCAGG
+CTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATACATTTAACTTTAT
+TACCTTTTGCCTCATGTATCTCATTAAAATTTTGCTGCTTAATCAAGGATCTGCATATTA
+TTTTAATTTTAGAATTCACAGTTCCAAGACTTTGAAAGTTTCAAGCGTTCTGGGTGaatg
+tgttatgctctctcccgccaccatgtctttataccccctgatttctcagccactatggca
+accactttctactcttagtagcccatatttagtccaatccccagctcaggagacacttct
+tccagggagccccctgtgccttccagtagtatcttgtacctgccctttttgcaaagctct
+ttcctcctggcttagaatggcccattgacctgtttgtttctcctattaaactgtaagcca
+ctcgagggtagagagcatctgttgttcaccattgcatcctcggtgctgagcactgcgtct
+gacatattatttagaaggtcagtaagtgctagtgggatTCAGGCTCCCAGTGGGTGGGAG
+AGAAAGGACGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGAGTATCAGCAGGCTGGTGTG
+AGGGAGAAATGCAGAGGATGGGTGAGTAGCATAATCGCTAATGATAGGGTAATGATAGAG
+CACATTTCACAACACCTTtaagccctttcacgtgcatcagataatttgatcctcataaaa
+gcctagagatagatatattacagggatgaaggtggagtattttgtggttatgtgatatgt
+ttaaaattatgcagtgagtaaatgactgggttcaaaccagaccttaaaagtctgttatct
+ttccCTCGAGCATGCAATGAAGTCTACATCATCCCTACCATGTCCATTTGATCACACCCT
+GGCCTCACAGCTCTGTGGTCTACAGGATACCTCATGGTGGTTTTATTGACCAGACAATAA
+TCCTCTTTCTAAGGGGATGCATTTCATTAATACATATGTAGATCATGAATTGTCTTTGAC
+TTTGAGGGGATGGTAGCCAGAGCAGAAAGCAAAGCTGATTTTCATCCCCGTCTGGTAATG
+TGGTTGGTAATGTGAAGATGGGTGTATTCTGAGATACCGGCTCCTTGCAGTGTGTGGTTC
+CTTCTGTTTTCAGGCCCAAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCTGT
+GCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGCCCATCCAAAAAG
+TCCAAGATGACACCAAAACCCTCATCAAGACAATTGTCACCAGGATCAATGACATTTCAC
+ACACGGTAAGGAGAGTATGCGGGGACAAAGTAGAACTGCAGCCAGCCCAGCACTGGCTCC
+TAGTGGCACTGGACCCAGATAGtccaagaaacatttattgaacgcctcctgaatgccagg
+cacctactggaagctgagaaGGATTTGAAAGCACAGGGCTCCACTCTTTCTGGTTGTTTC
+TTTTGGCCCCTCTGCCTGCTGAGATTCCAGGGGTTAGTGGTTCTAATTCTAAACCACTCC
+AAGAACATTTGATTTTGCTACATGTTTCCATTTAAAAATCATAGGATTTGggctgggtgt
+ggtggcttgtacctgtcatcccagcactttgggaggccaaagcaggaggatcattcgagc
+ccaagagttcgagaccagcctgggcagcatagggagaccccatctctacaaaaataataa
+aaaatgttagctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgagatg
+gaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatcatgccaccgtgc
+tccagcctgggtgacagagtgagaccttgtctcaaaataaataaataaataaataaaAGT
+CATAGGATTTgatcaggcatgatgggtcacatctgtaagcccattgctttaggaggccaa
+ggtaggaggatcagttgaggccaggagttcaagaccagcctgggcaacatggcaagacct
+ctctctctaatttttaaaaaaataaaaaTTAAAGATAAGAAAAAAATCATAGGATTCTCA
+TGAGGCCTCACGTGCTTATTTTCAACCTACCAAGGGGAAACCCAGGCCTCAGCGATTAGC
+TGAGCCACATGCAGGCACAGCCACTGTCTCTTTCCTTCCTGTCCCCTCTGTCCCCACCTT
+CTGCGCTCGCCTTCCTCCCTGACTTCACTTCCTTGAATCTTAGTGCCTACGACCAGAGGG
+AGCTGTGAAGTTCCTTGTGTCCCATTGGCAGGAACAAGACCCCCAGAAGCATCTCCTCAG
+GGCCTCTATCCCATCTCTAGATGTGCTTGTCATTAGGGttcttgtagttccagctgatct
+ctggccctgccgctcaaagatacccaaaagagcgagtctaccctttttcacattcaaccc
+tctactgatttgcaaatagcagtcagtgcccaccctggtcttttctctggggtccagcag
+gcctagaccttcagccattttcctgatgaGGTCTGTAtttgaaattaggaagattaagtt
+tgaatcttcacacttctgatgtctgtgagatcttcagcaagttccttactgtctttaagc
+cttgttttcatcatctggataatggggatatcacacactattcacaaggttgttatgagg
+cctaaattagctaaagcaATTGAATCCTCCTTACCCCCTGCATGGAGCTCTCTGGAGACT
+TCCACGTCTCCTGGTCATTGTGGGTGTCTTATGGTAGTCTTGGGCAGTTAGGGAGAAGTT
+AGGTGTCTGGAAGCAAAGATGGCTCAGAACTAGATAGAGTCTTGGGCATTTTATAGATAA
+AAACTCTTGTCTCCtttaaaaataataaaaaaaaattaGCTGGGCATATTAGCCACTCAG
+CAAGACTGCACGTGATAGATCCCGAGTGCCCCACCTTGGGTGGTGTAATACACAATATCA
+CGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGGGCAGATGGATGG
+GGAGAGCCTCCCGGAACTGGAGTCACTGGAGCAGGGTTGGGGGGCCTCACTGAGGGTACG
+GCCTTGATCTCTAAGGAGGAGGGACTGCCTGGAAAAGCTGACTGGGAGGGAGGACTCGGC
+TGGGGGTAGAAGGGACTAGGGAAGGCTGGGGGTGGGGGTGCTTATGGAGGACCTCAGATG
+CCTGGGGAACAGACTCCACTAAATAAAACATATGAAACCATGGCTGGTTCTTCAGCAGAG
+GCCATGTAGAGAAAGGAATGACCTAGGAAAGTTGGCCTGGAAGTGGAGGGAAGGATGGTG
+TGGGAAAAGCAGGAATCTCGGAGACCAGCTTAGAGGCTTGGCAGTCACCTGGGTGCAGGA
+TACAAGGGCCTGAGCCAAAGTGGTGAGGGAGGGTGGAAGGAGGCAGCCCAGAGAATGACC
+CTCCATGCCCACGGGGAAGGCAGAGGGCTCTGAGAGCGATTCCTCCCACATGCTGAGCAC
+TTGTTCTCCCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGGTT
+TGGACTTCATTCCTGGGCTCCACCCCATCCTGACCTTATCCAAGATGGACCAGACACTGG
+CAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGAAACGTGATCCAAATATCCAACG
+ACCTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCTCTAAGAGCTGCCACTTGC
+CCTGGGCCAGTGGCCTGGAGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCT
+ACTCCACAGAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGC
+AGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAGGTCACTCTTCCTGCAAGGACTACG
+TTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGATTGAAGAGCATTGCATGGACAC
+CCCTTATCCAGGACTCTGTCAATTTCCCTGACTCCTCTAAGCCACTCTTCCAAAGGCATA
+AGACCCTAAGCCTCCTTTTGCTTGAAACCAAAGATATATACACAGGATCCTATTCTCACC
+AGGAAGGGGGTCCACCCAGCAAAGAGTGGGCTGCATCTGGGATTCCCACCAAGGTCTTCA
+GCCATCAACAAGAGTTGTCTTGTCCCCTCTTGACCCATCTCCCCCTCACTGAATGCCTCA
+ATGTGACCAGGGGTGATTTCAGAGAGGGCAGAGGGGTAGGCAGAGCCTTTGGATGACCAG
+AACAAGGTTCCCTCTGAGAATTCCAAGGAGTTCCATGAAGACCACATCCACACACGCAGG
+AACTCCCAGCAACACAAGCTGGAAGCACATGTTTATTTATTCTGCATTTTATTCTGGATG
+GATTTGAAGCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCAGCCAGGGCCAGGGGTCT
+CCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTCTGGCTGAGCTGAACCCATTTTGAGT
+GACTCGAGGGTTGGGTTCATCTGAGCAAGAGCTGGCAAAGGTGGCTCTCCAGTTAGTTCT
+CTCGTAACTGGTTTCATTTCTACTGTGACTGATGTTACATCACAGTGTTTGCAATGGTGT
+TGCCCTGAGTGGATCTCCAAGGACCAGGTTATTTTAAAAAGATTTGTTTTGTCAAGTGTC
+ATATGTAGGTGTCTGCACCCAGGGGTGGGGAATGTTTGGGCAGAAGGGAGAAGGATCTAG
+AATGTGTTTTCTGAATAACATTTGTGTGGTGGGTTCTTTGGAAGGAGTGAGATCATTTTC
+TTATCTTCTGCAATTGCTTAGGATGTTTTTCATGAAAATAGCTCTTTCAGGGGGGTTGTG
+AGGCCTGGCCAGGCACCCCCTGGAGAGAAGTTTCTGGCCCTGGCTGACCCCAAAGAGCCT
+GGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAAAGGGCTGAAAGCCA
+TTTGTTGGGGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGGGAGTGGTCTTTCCTAT
+CATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAGCAGGGGTCCTTGGTGTGA
+CCCTCTGAATGGTCCAGGGTTGATCACACTCTGGGTTTATTACATGGCAGTGTTCCTATT
+TGGGGCTTGCATGCCAAATTGTAGTTCTTGTCTGATTGGCTCACCCAAGCAAGGCCAAAA
+TTACCAAAAATCTTGGGGGGTTTTTACTCCAGTGGTGAAGAAAACTCCTTTAGCAGGTGG
+TCCTGAGACCTGACAAGCACTGCTAGGCGAGTGCCAGGACTCCCCAGGCCAGGCCACCAG
+GATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGGTTTGGGGTCTGC
+CACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGGGTGGTGGATCTGTCCAAGGAAA
+CTTGAATCAAAGCAGTTAACTTTAAGactgagcacctgcttcatgctcagccctgactgg
+tgctataggctggagaagctcacccaataaacattaagattgaggcctgccctcagggat
+cttgcattcccagtggTCAAACCGCACTCACCCATGTGCCAAGGTGGGGTATTTACCACA
+GCAGCTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAATGGTATGAGCTGA
+GGGGGGCCGTGCCCAGGGGCCCACAGGGAACCCTGCTTGCACTTTGTAACATGTTTACTT
+TTCagggcatcttagcttctattatagccacatccctttgaaacaagataactgagaatt
+taaaaataagaaaataTGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCC
+ATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCC
+ATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAAATGACC
+CCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCATGAC
+CCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGAC
+CCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGAT
+GCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGAT
+GCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGAT
+GCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGAT
+GCTTTGCTTCAAATCCATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAA
+TAAAACGCA
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needle_out.markx10
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needle_out.markx10	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,866 @@
+########################################
+# Program: needle
+# Rundate: Mon 20 Jan 2025 11:47:46
+# Commandline: needle
+#    -asequence /tmp/saskia/tmpsg97cix0/files/8/d/8/dataset_8d81948c-002a-4a33-ae33-6042793fd219.dat
+#    -bsequence /tmp/saskia/tmpsg97cix0/files/f/b/9/dataset_fb94eaec-e786-4645-99b5-6936b8d9a907.dat
+#    -outfile /tmp/saskia/tmpsg97cix0/job_working_directory/000/15/outputs/dataset_6b349e2c-cff0-4ae4-a35c-c035f1bcf9bd.dat
+#    -gapopen 10.0
+#    -gapextend 0.5
+#    -brief yes
+#    -aformat3 markx10
+#    -auto
+# Align_format: markx10
+# Report_file: /tmp/saskia/tmpsg97cix0/job_working_directory/000/15/outputs/dataset_6b349e2c-cff0-4ae4-a35c-c035f1bcf9bd.dat
+########################################
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: FC12044_91407_8_200_406_24
+# 2: hg17
+# Matrix: EDNAFULL
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 20141
+# Identity:      21/20141 ( 0.1%)
+# Similarity:    21/20141 ( 0.1%)
+# Gaps:       20116/20141 (99.9%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+>>>FC12044_91407_8_200_406_24, 25 nt vs hg17, 20141 nt
+; mp_name: EMBOSS
+; mp_ver: 6.6.0.0
+; pg_name: needle
+; pg_ver: 6.6.0.0
+; pg_matrix: EDNAFULL
+; pg_gap-pen: -10.0 -0.5
+>>#1
+; sw_score: 60.5
+; sw_ident: 0.001
+; sw_overlap: 20141
+>FC12044_91407_8_200_406_24 ..
+; sq_len: 25
+; sq_type: D
+; al_start: 1
+; al_stop: 25
+; al_display_start: 1
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
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+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+----GTTAGCTCC-------CAC------------CTTAAGATGTTTA--
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
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+-----------------------------------------
+>hg17 ..
+; sq_len: 20141
+; sq_type: D
+; al_start: 1
+; al_stop: 20141
+; al_display_start: 1
+gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaa
+acaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGC
+CAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattat
+gagctaaataaatagtcttgggttaagccactaagttttaggcatagtgt
+gttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAA
+GAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGAT
+GTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCATT
+TTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGATATTTGG
+ggaaattttgtatagactagctttcacgatgttagggaattattattgtg
+tgataatggtcttgcagttacacagaaattcttccttattttttgggaag
+caccaaagtagggataaaatgtcatgatgtgtgcaatacactttaaaatg
+tttttgccaaaataattaatgaagcaaatatggaaaataataattattaa
+atctaggtgatgggtatattgtagttcactatagtattgcacacttttct
+gtatgtttaaatttttcatttaaaaaaaaactttgagctagacaccaggc
+tatgagctaggagcatagcaatgaccaaatagactcctaccaactcaaag
+aatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAA
+TGTGACTGTGGTCTCCAGGACCTGTGTGATCCTGGCTTTTCCTGTTCCCT
+CCGCATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTACCTTC
+CCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGTACATGAATATA
+ACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAat
+tcagcaaattttccctgggcacccatgtgttcttggcactggaaaagtac
+cgggactgaaacagttgatggcccaatccctgtcctcttaaaacctaagg
+gaggagaTGGAAAGGGGCACCCAACCCAGACTGAGAGACAGGAATTAGCT
+GCAAGGGGAACTAGGAAAAGCTTCTTTAAGGATGGAGAGGCCCTAGTGGA
+ATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCC
+ACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATGTA
+TGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggta
+gaaaacattttaggctttctaagccaaggcaaaattgaggatattacatg
+ggtacttatacaacaagaataaacaatttacacaattttttgttgacaga
+attcaaaactttatagacacagaaatgcaaatttcctgtaattttcccat
+gagaactattcttcttttgttttgttttgcgacAGGGTTGCGCtgatcct
+cccgcctcagtctccctaagtgctgagatgttgcaggaagtcagggaccc
+cgaacagagagatcggctggagccgtggcagaggaacataaattttgaag
+atttcattttaatatggacacttatcagttcccaaataatacttttataa
+ttttttatgcctgtctttgctttaatctcttaatcctgttatcttcataa
+gctaaggatgtacgtcacctcaggaccactgtgataattgtgttaactgt
+acagattgattgcaaaacatgtgtgtttgaacaatatgaaatcagtgcac
+cttgaaaaagagcagaataacagcaatttttagggaacaagggaagacaa
+ctataaggtctgactgcctgcggggtcgggcaaagggagccatatttttc
+ttcttgcagagagcctataaatagacctgcaagtaggagagatattgcta
+atttcttttgctagcatggaatattaatattaacaccctgggaaaggaat
+gcattcctggggggaggtctataaatggccgctctgggaatgtctatcct
+acgcaatggagataaggactgagatacgccctggtctcctgcagtaccct
+caggcttactagggtggtgaaaaactccgccctggtaaatttgtggtcag
+accagttttctgctctcgaacactgttttctgttgtttaagatgtttatc
+aagacaatacgtgcaccgctgaacacagacccttatcagtagttctcctt
+tttgccctttgaagcatgtgatctactccctgttttacaccccctcacct
+tttgaaacccttaataaaaaacttgctggtttgaggctcaggtgggcatc
+acagtactaccgatatgtgatgtcacccccggcggcccagctgtaaaatt
+cctctctttgtactctctctctttatttctcagccagctgacacttatgg
+aaaatagaaagaacctacgttgaaatattgggggcaggttcccccaataT
+CTGGTGCCCAACGTGGGAtactgagattacaagcatgagccactgcatct
+ggcctcttcttttgatttttttttttcaaacttttacaaatgtagaaacc
+attcttagcttttgggcattaccaaacccggcagtggcaggctcggttca
+ccaacgtcatttgcagttccccgCTTTATGTTATGGgttttgttttgttt
+tgttttttttattgagacagagtttcactcttgttgcccaggctgtagtg
+caatggtctgatcttggctcactgcaacctccacttcccaggttcaagcc
+attctcctgcctcagcctctcaagtagctgggattacagacactcaccac
+cacacctggctaattttgtatttttagtagagatgaggtttcaccatgtt
+ggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggc
+ctcccaaagtgctgggattacaggcttgagctaccacgcctggctGGGTT
+GGTTCTCAATGGAGTGGTTTGTTTTTGGAGCTGCTCTGCGCAGtggggac
+cagaataggcctgggttcctagcccattgctattccttaccagctgtgga
+ttctaaggaaagtcatttaacctcgctggaccttagattcctcatccctg
+aaGCCCAAGGGTaaaacaaaacaaaacaaaacaaaacaaaccaaCCCATC
+ATGTAAAGCGGGGAACTACAAACGATACAGGTGAAACATGCCTACCACAC
+CACTCACAGGCTATGATGACAAAAACGTGGCTACATCTGGGACCACCCCC
+CAACCCCCACTTTGTACGTAGGAAATACGGAGTTGAGGATGGAGACCCAC
+AGTATGTCCAGAGTGTCCCCAAAGGCCACAGTGCCCGCCTGGAGCCCTCC
+AGAGAGCGTGCACTCCCTGGGGTGCCAGCCAGAGACAACTTGCCCTGAGG
+CTTGGAACTCGATTCTCCGCGTGCCAGAGAAGGGGTGGGACTTCAGAACC
+CCCAACCCCGCAATCTGGGTCGGGGAGCCTGGCGCACTGCGGGCCGCTCC
+CTCTAACCCTGGGCTTCCCTGGCGTCCAGGGCCGTCGGGGCCGAGTCCCG
+ATTCGCTCCCACCCCGAAGCCGCGCCAGGACCAACGAGGGCGCAGCCGTA
+TGCCCCAGCCCGCTCCGCGGAGCCCCTCACAGCCAcccccgccccgaccg
+cgccccgcgcggcTCGAAGCACCTTCCCAAGGGGCTGGTCCTTGCGCCAT
+AGTCGCGCCGGAGCCTCTGGAGGGACATCAAGGATTTCTCGCTCCTACCA
+GCCACCCCCAAATTTTTGGGAGGTACCCAAGGGTGCGCGCGTGGCTCCTG
+GCGCGCCGAGGCCCTCCCTCGAGGCCCCGCGAGGTGCACACTGCGGGCCC
+AGGGCTAGCAGCCGCCCGGCACGTCGCTACCCTGAGGGGCGGGGCGGGAG
+CTGGCGCTAGAAATGCGCCGGGGCCTGCGGGGCAGTTGCGCAAGTTGTGA
+TCGGGCCGCTATAAGAGGGGCGGGCAGGCATGGAGCCCCGTAGGAATCGC
+AGCGCCAGCGGTTGCAAGGTAAGGCCCCGGCGCGCTCCTTCCTCCTTCTC
+TGCTGGTCTTTCTTGGCAGGCCACAGGGCCCCACACAACTCTGGATCCCG
+GGGAAACTGAGTCAGGAGGGATGCAGGGCGGATGGCTTAGTTCTGGACTA
+TGATAGCTTTGTACCGAGTTCTAGCCAGATAGAAGGTTACCGGGAGCTGG
+GGAGCGTTGGATTTGCTGCTGGGCTGTGCCGGTGCCCAGAAGGCAGGACC
+TTGCAGAACCAGCCAGGTCCCTGGGAGACTGTCAGACCCACCAACCTGGT
+GGCATTCGCAGAGCTGAGATGCATTGGAAATTGCCTTGGGCACATCCCCA
+AAGATCAGGATGTCCCACCCCAGTCTGAAGGAGATAAAGTTGGGGGTAGG
+AGAGACGCAGATGCAAGTGATCAGTCTCAGTCCCAGACATTGCCTTGCTC
+TGCGGGTAGGAATTCAGGATTCATTTTCCAGGGAAGTTCCTGACCTCTGA
+ATGAGAGGGGCTGTGTAAGGCCAATGCCTGGGAGGAAGGCAAGGATGAGT
+AGAGGTGGGGGGAAACAAGTGTCAGGAAGACTCAAAATCTTCCAGAGAAA
+TTGTGCAGGGTCTTACCAGATCTGTCCTCAAAGCCATGCAAATTGCCTTC
+TTTGCAATGCATACAATGAGGTGTCTCTGGGGGTCAGAACTGGTTATTAG
+GGAACTTCTAGCCAGGACTGCTAAATACGCGCTGTTGGCCCACCAGGCTC
+ACCTATAGCCTTCCTTCAGTCTGGGCTTGGTTTGGATTTCACTGTGGGTG
+CCATCGCCTTTACACTCCTGTTTCTATAGTTTAAAGATAGTGGTGCTTTG
+GGAAAGTGACTCCTTAAATACAGTTAGGTCCAAGTGAGACAAGTGGCCTG
+GCTGTCATTTCAGAATAGCAGCTTCCAAGAGGTGATTAATTTCTGTTGGA
+AGGGTGATCTTTGGGGAGGTGGGTGAAGAGCAGAGACTTGGTGGTACCGT
+TCCAGGAGCACAGGCTCTCTTCCTTTGCAGTGCAGAATGACCTCTGGCAG
+CCGGAGTTGTGTTTGTTCTGTAGGATTCTGAGGTGGGCCATGGGCAGCTG
+GAACTGGGGAATTTTGCCAATCTCTTTCATATTAGGATTGTCTGCAGAAC
+CAGATATGGAGGCTTCTAGCAACGTGAGTGCTCCTGTTCTAATGCCCTTA
+GAAACAAGAAGGCCACACTGATCATTTCTCTCACTTAGGCAGGGAGACAA
+GGCAAGAGAGAAACAGTGGATGCTTTTAGGTTCTTTCCCTTCCCAAGCAG
+TTGTGGACATTGGGCTGAGGGGAACATTTCCACATTGGCTAAAGGAGCGT
+CCTCCTCATATTTTGTACATTTTATACCCAAAATAACTCTTCTTGGTATT
+TGGGGAAATATTTTCCTCCCCGTCCATTCCAGGAAATGGCTCCAAGTGCC
+AAGGACAGAGCCAGGGAAGTTGCAATGAATTCCTGCCCGTCAGCCCCAGG
+CAGATGCCTTGCACGTCTGAGTGGCCCATGCAGAGCGTGGAGGTGGCCGC
+CACGGAACCTGGGTCAATGTCCCACCCCCGCTTAGATGCCACCAGGGGCG
+TGGGAGCCAAGGAGAGAAGAGGGGCTCCAGGAAGGTAGAGTCCTTGTGTC
+TTGTGCATCTGTGAACAGCACTGGTATGATTTAAAGGAAAATTGAGCCAA
+ATTTTCCGGCAGTCAGTTACCCCATCCCCACCGGGGTAGGAGTCTGGCAG
+CCGCAGCTCCATTCTGGCCAGTCGGCAGAGAGCCTTGAAATTCTTCTTTG
+TCCACACAGTTGTCTCAGAGAAACAGAGAGGTTGTTTCTGCTTAAAAACA
+ACACACTTGGTGTCTGGGCCCACAGACTCCTTTGCACTTATTCCACGTGT
+GACAGCCAATGTGCCTCGTTGCTTAGCAGACAGCATGTTACCGTCTTTCC
+TGCTCAGTTTGTTAGCTCTATGGAATGGAATTTATAATCAATGCCCATAC
+CAACATTTCACTAATATCATAGGAGATTTAGTCTCCATCTGGGTGTACAT
+TACATTTGCTCTGGGGTGCTCCAGGCTGGGGGGTTGCCAAGGAAGAGAAG
+AGAAACCGCAGAGAAGACGGGAGGGCAGGGCAGGGGTCTCTGAGAAGGGG
+AGGGGTCCCAGAGTGCAGGAGCAGGAGCCAGGCTCATGAAAGGGGCCACG
+GGCGGGAGTATCCAGGGACGGCAGTCAAGATGGAGCACAGCTTAGGAAGC
+TGAAGGGAATCCTGGCCCACCTGGGTGCTAGAGGGCACATAGGAAGTGCA
+GGAAGCAGACCAAGGTCCCCAAGAGAGGGAGACCTGGACGCTGAAGCATT
+TTCTGTCTTTATTAAGACAACTCCGTAAGAATTCCTGCTGGGCCAAAGTG
+AATTCTAGGATGCGACTTTAAGATGGGAGCAAGCGAACCATTGAGGAGGC
+AGGTTACCCTAGTTAGCCAATGCAGATCGAGAATGGGAAATCTTTCattt
+attcatgcaacagatatttaacgaagccctgccgtgttccaggcctgtga
+tagatgctggaacaggtacagagatAcaggtgtcattaattgatcagggc
+aacctctccttctgagtcttgctggagcttcagatgcccctcacacagag
+ctcgagggagcctcaacaattgatcagaagtcaggcaccatggctcacgc
+atataatcccagcactttgggaggccaaggcaggtggatcactggagccc
+aggagttccagatcagctggggcaacatggcaaaaccccatctctattaa
+aaaaaaaaaaagtaactggatgtgatggtacacacctgtagtcccagcta
+cttgggaggctgagaggtgggagaattgcttgagcccgggaagtcggggg
+tccagtgagccttgatcacaccactgcactccagcctgagtgacagagca
+agaccctgacacacacacacacacacacacacacacacacacagattaga
+gctgaaacaggagtagaaacctatctgtatctctgATGAGATCAGATCTT
+TCTGATGAACAGAAAGAATGTAACCCCTGTACTCACACCCTCTCTGCTGG
+TTACATATGTTAACACGATTTCTCAAATGAGGCTTTTGGTTGCAAATAAG
+AGAAAATCACTCACGCTGGCCCTGTGTTTTTCAAATTGTTTATTGTGATC
+AACATTTGAAAAAAGAGCCGAGACTCTCAAGAGTGCATTACCCACGGTAA
+GGGTGAATTTTACTTCTTGACACTTATTTCTCTTACATGTATCTATCTGT
+CTCAAATGAAAAATATATTTAGAAAGTTGAAAGCTATCCAAGTGAGTATA
+AGAAAAGAGTATCTCACCCTGAAGGCTAAGGACAGGGAGGGCCACCAGGC
+CTCACGAGGACCCAGGAACCACAAAGAAGGCTAGGAAGGAGCACAGGCGG
+TGACCATACTCTGGCTCAGTGGCTATGTGGGCTCTGGTCTCTCTCAGCTG
+TTCCATGCATATGAGGCCAAATGTGGCTACCCTAGAGCTTCTGAGCCCTC
+AACAGAGATGAACTGGACTCTCTGCAGCCCCACTCTAAATTCCTAAGAGA
+GAAGTTGATTGACCCAATCAGGGTCAGGAGAAGGAAGGGAGGAGGAAAGG
+GAGGAGAGAAGAGCCTCTTCGTCTCTTGCCTACCACTGGCCAGGCAATTG
+TAGCCAAGGGGGCTGGAGTGTAAATGCAAACATAGCCATCAAGGGTtgtg
+tatgtgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtCTCTTGGGTAGGT
+TAGATCTCCCAGGAGGTCCCTACTAAACAGACTTAAGCCCGCAAAATTTT
+AGCTCTCCAGCCTCACACACTCCACCCCTCTACCATATTGAATCTTCCCA
+AACCAACTATGGCTTTCCCTAACTCCGGAGcttggcctggaatgccctgc
+ttcccctctttcccctggggaacgcctgtccttcaggcctcagttcacac
+actgcctcccttgcaaagctctccTCCCATCCCCGGAGTCCCTCTTCCCC
+TTTGTTCTTTGGGTTCTATGCTTCTTCCCTCATAACTCCCACCAGGTTGT
+GTTAAAATGAGTTGTTCAAGGTCCTGTCTGTTCCACTAGATTCTGAGCAA
+CTTGGAGAACGAAGATCCAAACTTCGCTGCCTTTATTTCCTCCTTTGTTC
+TTTTCTCATCCCCAAGTCCCTTCCAACTTGGAGTTATgaagaaaggaagg
+aaggaagggtgggagggaagaaCAGGAGGGGATCCCACAGGAGAATGTGT
+ATAGGGAGAGGACTCAGACTAGCTAAAGCTTTTCCCTCATAATTAATAGC
+AAATACCATGTTACCTGAATTTAATTCACAGTAGCATACAAAAGACTCGC
+TTTGTTCTCCCCATTGATGTCATCAGAGGGCTGTGGGCAGGCCTAATCTT
+GGCTCAGGAGGCCCTCCAGCCTGGATCTAAAGAGCAGCAGATGggccagg
+ctcggtggctcatgcctgtaatcccagcattttgggaggccgaggcgggt
+ggatcacgaggtcaggagtttgagaccagcctggccaagatggtgaagcc
+tcgtctctactaaaaatacaaaaattagccaggtgcggtggtgggcgcct
+gtatttccagctacccgggaggctgaggaggctgaggcaggagaatcgct
+tgaacccgggaggcggaggttgcagtgagccgaggtcacgccactgcact
+ctagcctgggcaacagagcaagactccgtcaaaaaaaaaataaaaaaata
+aaaaaataaaaaaaataaaGAGGAGCACACATCTCTGCCCATCCTAACTC
+CCACTTTGACATTGAGGTCCCCAGGATGGAGGGTCTGCCTCCATCTGCCT
+TGTCCCCTGCAATGGTGGGAAGGTGATGGAGCTCAAGTCTAGAGGCCACC
+AGCTTCTTAGGGAGGTAGGAGGTGGAGGGTGGGGTGCGGGCCCTGCACAC
+AACTGCCAAGTGAGGATGGGGGTGGGGTCCACCTGAGGATAAGTAACAGT
+GAGGCTGGTGCAGAGGACCCAGGTGGAGGTAGACAGCAGAATTTGTGGTG
+GGGTGGATGGCACATTATATAAGCCTCTCTTGCTGCCCTGTTTACTGAGA
+TTGTTTCAttatcttttttggcttttgtttttaagagatggggtcttgct
+gtgtcacacaggctggagtgcactgtgtgatcatacctcactgcagcctc
+gacatcctgggctcaggcaaacctcccaccttggcctcccaagtagctgg
+gaccacaagcgtttgccaccacactcagctatttttatttttatttttat
+tttttttagagatggggtcttgctgtgtcgcccaggctggtcttgaactc
+ctgggctcaagcgatcctcctgccttggcctcccaaagccctgggattat
+aggctgagccaccacacccagccACATTTCATCTGTGCAGCTCCAGGGGC
+TCCACATTCTACTCTTCTCATTTCTTCTCCAGGGTACCCATGGCAAGGGA
+TGAGGGTAGAAGATGGGGCAGCCAGGCCTTGATTAAAGGAGAAGGAAGGC
+AGCCTGTGGAGAGGGCAGCCCAGGGAGTGCAGAGAGAAGTGGGCCATGAG
+GGAGACAGCAGAGTGCAGGCTGCGTCCCAAATGAGCATACAGCCCACTGT
+GAGCCCACCATCTTCCTAGAGACCCCTCTCCTCTCCAGGAGCTGCTTCAG
+TAGCACTCAGAGGAAAGAATGATGCTGTATCAACATTTCAGCAGCTCATC
+TTTTAACTCTAAGAAAATGGCAGCTCCTAAATGTTCAAAACTGCTTTGGA
+AACTTCTGGAGAGAGGTTTTGCAGCTCAGGCAGACAGCTGATCGCGGCCT
+TTCTTCCACCCCAACCCATGCTCTCCCCATGCTCTCCTGCCACAGCTGCA
+GCGGGCCCCTGGGTCCTACATTTGCAGCCCTTTGTCTCTGAGCTCAGACT
+TCCAATTCCAAGCGGCAGCTGGGCAGGCTCACCAGCATGTCCAGCCAGTA
+CTAGGACATCAGCAGGAGCCCAACCACCTCTTTCCAAAATCTCTCCTCAT
+GTCTCTCCTAGTTTCCATCTCCATCCTTCTAGTCAGCCAGGCTGAAAACA
+TTTGCTCCTCAGGGTGCAGAAGGGAAAGCTTTGCCTCCCTTCCTGGTGCT
+CACTGCCCCTGCGATTCCAGCCCAAGCCCTCCCCGGCTCCTCACCCTGGT
+GTCAGCTGGAAGCCACCATCTCCTAAACCCACCTGtgttcttccacctct
+gccagggctgccctctcctccaccttcacaaactcaattcctacccattc
+tcaggtcccttatcaaatgccatctcctccatgatgcctccctgattccc
+cTGCTGGAaataatggtgataacagctaaggcattggggttggctacgtg
+ccaggcaaggagttggcactttacatgctttatctcatttcagccacata
+acatcgacaggtggcattatgattcatatcatccccatctgatagccagg
+aaaactgagtcccagagaggttagccactttcctagggccCTGTGCTCTG
+ACTCAAGCATAGCTCTGAGGAACTCTAGCATTCATCAGTTTAAGCACCAT
+GACTTTCTTTGCTGAGTCACCCAAGGCATTTCTTCATTTAAATGTTCTTC
+CTTGGCCAGGCGCAGTGGCTCAggcccaatgcggtggctcacgcctgtaa
+tctcaacactttgggaggccgaggtgggcagataatctgaggtcaggagt
+tcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatac
+aaaaaaatgaggctgggcgtgatgactcacacctgtaatcccagcacttt
+gggaggccaaggcaggtggattacatgaggtcaggagttcgagaccagcc
+tggccaacatggtgaaatcctatctctattaaaaatacaaaaaattagcc
+aggcatggtggcaggcacctgtaatcccagctacttgggaggctgaggca
+ggaaaatggcttgaacccgggaggtggaggttgcagtgagccaaggttgc
+accattgcactccagcctgggcaaaaagagggaaacatcgtctaaaaaag
+aaaaaaaaaaaattagccaggctgggtggtgcatgcccgtaattccagct
+actcaggaggatgaagcaagagaattgcttgaacccaggaggcagagatt
+acagtgagctgagatcacaacactgcactccagcctaggtaaagaacaag
+actccatctcaaaaataaataaataaaaataaaTGTTCTTCCTTGCAATG
+AAGTTAAATATGTAAATTCTCAAACCAGTTGCTTAAGGGCACAGTTTTGT
+TCTTTACCTATATTTTTAACAAATATTTTATGTAAGTAGTTGACAAAATC
+AAATACTGTGTACACTACCGAGGCTTCCCTGGGAAAGCCATCAGCCTCTG
+CCCCATCCCTTCCCACTCCTGATTCCACTTTCCTGTGTTTCCATATCTTT
+TTCATGTCTGTTTCTGGCCCACAGTGGGCGATCAATACATGTTAGCCACC
+AACCATCAAACCTATATTGAGTAATTATGGTATGTCAGGCACTATGCTCA
+ATGAAATTGTAttaggcttgtacaaaagtaattgtggtttttaagagtaa
+tggcaaaaacggcagttactttcgcaccaacTATTTGCTGCCTTGAATTA
+TTCCTCCTCTCCTCATCCCTAAACCCTGCTCCTCCCAGCCATTCTTCCTC
+CCCTTCTTGGGCCATGGCCAGGCCCCACCCAGGTACTAAGACTCAGGTGA
+ACCAAGGAAGACTTAATGCCCACTCTTTTCTGATGCCCATGTTGGCATGT
+GTTAAGtcggttagcattaagtttggctgcatttagcagagacccaaaag
+aacagtgccttttaaaaggcagaggttatgtctctcacacacacccagca
+caagtccaagaccagcatggcatctcagctccatcaacctcaggaaccga
+gctcctgcagctccctgccctgcagttgataaggtgaggtctttgtcctc
+ctggttcaagatggtgctagaatgttggctaccatatctatagtccaggc
+atcagaatggagcaagggatgaaaaaggaagagatgaaggcacacgacag
+gttcctgagagctggcacaggacacttctgcttatatttcactggccaga
+acttagtcacatggtcacacctagttgggagactctgagaagtaaagtat
+ttattctagatggccatatccctacctaagacttggagttttctatgact
+ggggaagaacggaagacaagatattgggaaagactagcagcctctactaA
+AAGGGTGATCtgtgttgatgtgcgtgtgtgtgtgatgtttgtatgagcat
+gtgtgttatgtgttgtgtgtTGGTGGGGCAGATTCTTGCGAGCACTTTGG
+TCTCAGATGGACCTGCTACCAGTTCTCTCTGCAGACCCCCATAGGTTTCT
+CCTAAACCTGGCCTCTCCTATTAGGCAGCCTTACTCAGCGGCAGCTTCTC
+AGCTCCATGTTTTCAAGGAACCACAATTTATTTCCAGCATCCACTGAAGC
+ATATTATCAGTGGTGATAGAGGGGGCTTGTAAAACTGTTTTTCCACTTAG
+GTATTAGAGGGTGGCCATTATTTGAGAGTGACTATGACCACAGTTAATCT
+GGTAATAAATTCTCTTGGGTAGGAGGGGGAAAGGAAAGGATGCTTTAAGG
+AAGCATCTTGCCAGGAGACACAAAGCTAACAAGAGTGGAGCCTGCAGCTG
+GAGCCGCAGAGCCTAATCACTACACCCGCCCATCTCTGCTAGGGTTTCAT
+GACTTCGTATCGGGGATTAGCAGTATTTAACTCTGTTGCACAAACATTTG
+GTGTATTATTCAGGTAACAAGTAGCTAATAGAGGAAGTTTTACTTTTTTA
+AGACATAAATTTGCCTTTTCCCAAATTACTTGGTACATAGTACTTTTCAT
+GTTTGAAGTTGAGATGTGGGTACAATACCATAGCTTTATTCCAGAGCAGG
+GTATTTGTTTCCAAATGCCATGTTCCCAGCAGCTGCCCTTGACTGGGAAT
+TGGGGTGTGATTTGGGCTTTTCCTTAAATCCTTGAGGAGCTGGAGGGGTG
+GGTGGCTCGCACTCCTGCTTTctggatctgaatcctgactctgtcatgga
+cctgtttgactttgggcaagttgactcctattcctgagccccatattttt
+ctcttctgtgaaattcagattaaaaAAACATGGCTTTGATCAAACATTAT
+AAATAATATATAGACAGACTGCTTGTTTTTATTGTATTGCCAGAAATGAA
+TCCTACTAATATTGCCATCTATGGACAGAAAATGTATTACCTGTCTTCAT
+CAAGACCCAGACGAGGAAGAACACGAAAAGCGGAGATTAATTTTACTGCC
+ATCTCCAGAACCGTCATCCTAATATTTACTTACATTTTATTATTATTTCA
+GGCTCATGCACATATACTTAGCATGGATCATTGGCCACAGACTCGCATAC
+ATTTAACTTTATTACCTTTTGCCTCATGTATCTCATTAAAATTTTGCTGC
+TTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCAAG
+ACTTTGAAAGTTTCAAGCGTTCTGGGTGaatgtgttatgctctctcccgc
+caccatgtctttataccccctgatttctcagccactatggcaaccacttt
+ctactcttagtagcccatatttagtccaatccccagctcaggagacactt
+cttccagggagccccctgtgccttccagtagtatcttgtacctgcccttt
+ttgcaaagctctttcctcctggcttagaatggcccattgacctgtttgtt
+tctcctattaaactgtaagccactcgagggtagagagcatctgttgttca
+ccattgcatcctcggtgctgagcactgcgtctgacatattatttagaagg
+tcagtaagtgctagtgggatTCAGGCTCCCAGTGGGTGGGAGAGAAAGGA
+CGTAAGGAAGCAAGTGGTAAAGGCCCTCACAGAGTATCAGCAGGCTGGTG
+TGAGGGAGAAATGCAGAGGATGGGTGAGTAGCATAATCGCTAATGATAGG
+GTAATGATAGAGCACATTTCACAACACCTTtaagccctttcacgtgcatc
+agataatttgatcctcataaaagcctagagatagatatattacagggatg
+aaggtggagtattttgtggttatgtgatatgtttaaaattatgcagtgag
+taaatgactgggttcaaaccagaccttaaaagtctgttatctttccCTCG
+AGCATGCAATGAAGTCTACATCATCCCTACCATGTCCATTTGATCACACC
+CTGGCCTCACAGCTCTGTGGTCTACAGGATACCTCATGGTGGTTTTATTG
+ACCAGACAATAATCCTCTTTCTAAGGGGATGCATTTCATTAATACATATG
+TAGATCATGAATTGTCTTTGACTTTGAGGGGATGGTAGCCAGAGCAGAAA
+GCAAAGCTGATTTTCATCCCCGTCTGGTAATGTGGTTGGTAATGTGAAGA
+TGGGTGTATTCTGAGATACCGGCTCCTTGCAGTGTGTGGTTCCTTCTGTT
+TTCAGGCCCAAGAAGCCCATCCTGGGAAGGAAAATGCATTGGGGAACCCT
+GTGCGGATTCTTGTGGCTTTGGCCCTATCTTTTCTATGTCCAAGCTGTGC
+CCATCCAAAAAGTCCAAGATGACACCAAAACCCTCATCAAGACAATTGTC
+ACCAGGATCAATGACATTTCACACACGGTAAGGAGAGTATGCGGGGACAA
+AGTAGAACTGCAGCCAGCCCAGCACTGGCTCCTAGTGGCACTGGACCCAG
+ATAGtccaagaaacatttattgaacgcctcctgaatgccaggcacctact
+ggaagctgagaaGGATTTGAAAGCACAGGGCTCCACTCTTTCTGGTTGTT
+TCTTTTGGCCCCTCTGCCTGCTGAGATTCCAGGGGTTAGTGGTTCTAATT
+CTAAACCACTCCAAGAACATTTGATTTTGCTACATGTTTCCATTTAAAAA
+TCATAGGATTTGggctgggtgtggtggcttgtacctgtcatcccagcact
+ttgggaggccaaagcaggaggatcattcgagcccaagagttcgagaccag
+cctgggcagcatagggagaccccatctctacaaaaataataaaaaatgtt
+agctgggcatggtggtgtgtacctgtggtcccagctaggggaggctgaga
+tggaaggatcacctgagcctgggaggttgaggctgcagtgggccctgatc
+atgccaccgtgctccagcctgggtgacagagtgagaccttgtctcaaaat
+aaataaataaataaataaaAGTCATAGGATTTgatcaggcatgatgggtc
+acatctgtaagcccattgctttaggaggccaaggtaggaggatcagttga
+ggccaggagttcaagaccagcctgggcaacatggcaagacctctctctct
+aatttttaaaaaaataaaaaTTAAAGATAAGAAAAAAATCATAGGATTCT
+CATGAGGCCTCACGTGCTTATTTTCAACCTACCAAGGGGAAACCCAGGCC
+TCAGCGATTAGCTGAGCCACATGCAGGCACAGCCACTGTCTCTTTCCTTC
+CTGTCCCCTCTGTCCCCACCTTCTGCGCTCGCCTTCCTCCCTGACTTCAC
+TTCCTTGAATCTTAGTGCCTACGACCAGAGGGAGCTGTGAAGTTCCTTGT
+GTCCCATTGGCAGGAACAAGACCCCCAGAAGCATCTCCTCAGGGCCTCTA
+TCCCATCTCTAGATGTGCTTGTCATTAGGGttcttgtagttccagctgat
+ctctggccctgccgctcaaagatacccaaaagagcgagtctacccttttt
+cacattcaaccctctactgatttgcaaatagcagtcagtgcccaccctgg
+tcttttctctggggtccagcaggcctagaccttcagccattttcctgatg
+aGGTCTGTAtttgaaattaggaagattaagtttgaatcttcacacttctg
+atgtctgtgagatcttcagcaagttccttactgtctttaagccttgtttt
+catcatctggataatggggatatcacacactattcacaaggttgttatga
+ggcctaaattagctaaagcaATTGAATCCTCCTTACCCCCTGCATGGAGC
+TCTCTGGAGACTTCCACGTCTCCTGGTCATTGTGGGTGTCTTATGGTAGT
+CTTGGGCAGTTAGGGAGAAGTTAGGTGTCTGGAAGCAAAGATGGCTCAGA
+ACTAGATAGAGTCTTGGGCATTTTATAGATAAAAACTCTTGTCTCCttta
+aaaataataaaaaaaaattaGCTGGGCATATTAGCCACTCAGCAAGACTG
+CACGTGATAGATCCCGAGTGCCCCACCTTGGGTGGTGTAATACACAATAT
+CACGGGAGCCCCGGGTAGTAACCACGGAGGTGTCAGCCTCAGTGCTGTGG
+GCAGATGGATGGGGAGAGCCTCCCGGAACTGGAGTCACTGGAGCAGGGTT
+GGGGGGCCTCACTGAGGGTACGGCCTTGATCTCTAAGGAGGAGGGACTGC
+CTGGAAAAGCTGACTGGGAGGGAGGACTCGGCTGGGGGTAGAAGGGACTA
+GGGAAGGCTGGGGGTGGGGGTGCTTATGGAGGACCTCAGATGCCTGGGGA
+ACAGACTCCACTAAATAAAACATATGAAACCATGGCTGGTTCTTCAGCAG
+AGGCCATGTAGAGAAAGGAATGACCTAGGAAAGTTGGCCTGGAAGTGGAG
+GGAAGGATGGTGTGGGAAAAGCAGGAATCTCGGAGACCAGCTTAGAGGCT
+TGGCAGTCACCTGGGTGCAGGATACAAGGGCCTGAGCCAAAGTGGTGAGG
+GAGGGTGGAAGGAGGCAGCCCAGAGAATGACCCTCCATGCCCACGGGGAA
+GGCAGAGGGCTCTGAGAGCGATTCCTCCCACATGCTGAGCACTTGTTCTC
+CCTCTTCCTCCTGCATAGCAGTCAGTCTCCTCCAAACAGAAAGTCACCGG
+TTTGGACTTCATTCCTGGGCTCCACCCCATCCTGACCTTATCCAAGATGG
+ACCAGACACTGGCAGTCTACCAACAGATCCTCACCAGTATGCCTTCCAGA
+AACGTGATCCAAATATCCAACGACCTGGAGAACCTCCGGGATCTTCTTCA
+CGTGCTGGCCTTCTCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGG
+AGACCTTGGACAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACA
+GAGGTGGTGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTG
+GCAGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAGGTCACTCTTCCT
+GCAAGGACTACGTTAAGGGAAGGAACTCTGGCTTCCAGGTATCTCCAGGA
+TTGAAGAGCATTGCATGGACACCCCTTATCCAGGACTCTGTCAATTTCCC
+TGACTCCTCTAAGCCACTCTTCCAAAGGCATAAGACCCTAAGCCTCCTTT
+TGCTTGAAACCAAAGATATATACACAGGATCCTATTCTCACCAGGAAGGG
+GGTCCACCCAGCAAAGAGTGGGCTGCATCTGGGATTCCCACCAAGGTCTT
+CAGCCATCAACAAGAGTTGTCTTGTCCCCTCTTGACCCATCTCCCCCTCA
+CTGAATGCCTCAATGTGACCAGGGGTGATTTCAGAGAGGGCAGAGGGGTA
+GGCAGAGCCTTTGGATGACCAGAACAAGGTTCCCTCTGAGAATTCCAAGG
+AGTTCCATGAAGACCACATCCACACACGCAGGAACTCCCAGCAACACAAG
+CTGGAAGCACATGTTTATTTATTCTGCATTTTATTCTGGATGGATTTGAA
+GCAAAGCACCAGCTTCTCCAGGCTCTTTGGGGTCAGCCAGGGCCAGGGGT
+CTCCCTGGAGTGCAGTTTCCAATCCCATAGATGGGTCTGGCTGAGCTGAA
+CCCATTTTGAGTGACTCGAGGGTTGGGTTCATCTGAGCAAGAGCTGGCAA
+AGGTGGCTCTCCAGTTAGTTCTCTCGTAACTGGTTTCATTTCTACTGTGA
+CTGATGTTACATCACAGTGTTTGCAATGGTGTTGCCCTGAGTGGATCTCC
+AAGGACCAGGTTATTTTAAAAAGATTTGTTTTGTCAAGTGTCATATGTAG
+GTGTCTGCACCCAGGGGTGGGGAATGTTTGGGCAGAAGGGAGAAGGATCT
+AGAATGTGTTTTCTGAATAACATTTGTGTGGTGGGTTCTTTGGAAGGAGT
+GAGATCATTTTCTTATCTTCTGCAATTGCTTAGGATGTTTTTCATGAAAA
+TAGCTCTTTCAGGGGGGTTGTGAGGCCTGGCCAGGCACCCCCTGGAGAGA
+AGTTTCTGGCCCTGGCTGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTG
+CTTCAAATCCATCCAGAATAAAACGCAAAGGGCTGAAAGCCATTTGTTGG
+GGCAGTGGTAAGCTCTGGCTTTCTCCGACTGCTAGGGAGTGGTCTTTCCT
+ATCATGGAGTGACGGTCCCACACTGGTGACTGCGATCTTCAGAGCAGGGG
+TCCTTGGTGTGACCCTCTGAATGGTCCAGGGTTGATCACACTCTGGGTTT
+ATTACATGGCAGTGTTCCTATTTGGGGCTTGCATGCCAAATTGTAGTTCT
+TGTCTGATTGGCTCACCCAAGCAAGGCCAAAATTACCAAAAATCTTGGGG
+GGTTTTTACTCCAGTGGTGAAGAAAACTCCTTTAGCAGGTGGTCCTGAGA
+CCTGACAAGCACTGCTAGGCGAGTGCCAGGACTCCCCAGGCCAGGCCACC
+AGGATGGCCCTTCCCACTGGAGGTCACATTCAGGAAGATGAAAGAGGAGG
+TTTGGGGTCTGCCACCATCCTGCTGCTGTGTTTTTGCTATCACACAGTGG
+GTGGTGGATCTGTCCAAGGAAACTTGAATCAAAGCAGTTAACTTTAAGac
+tgagcacctgcttcatgctcagccctgactggtgctataggctggagaag
+ctcacccaataaacattaagattgaggcctgccctcagggatcttgcatt
+cccagtggTCAAACCGCACTCACCCATGTGCCAAGGTGGGGTATTTACCA
+CAGCAGCTGAACAGCCAAATGCATGGTGCAGTTGACAGCAGGTGGGAAAT
+GGTATGAGCTGAGGGGGGCCGTGCCCAGGGGCCCACAGGGAACCCTGCTT
+GCACTTTGTAACATGTTTACTTTTCagggcatcttagcttctattatagc
+cacatccctttgaaacaagataactgagaatttaaaaataagaaaataTG
+ACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAA
+TAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAAT
+CCATCCAGAATAAAACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAA
+ACGCAAATGACCCCAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATC
+CATCCAGAATAAAACGCATGACCCCAAAGAGCCTGGAGAAGCTGATGCTT
+TGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAA
+GCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGATGCTTTGCT
+TCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCTGGAGAAGCTG
+ATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCCCAAAGAGCCT
+GGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCAGACCC
+CAAAGAGCCTGGAGAAGCTGATGCTTTGCTTCAAATCCATCCAGAATAAA
+ACGCAGATGCTTTGCTTCAAATCCATCCAGAATAAAACGCA
+
+#---------------------------------------
+#---------------------------------------
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needle_out.score
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needle_out.score	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,4 @@
+Sequence hg17 20196 (604.5)
+
+#---------------------------------------
+#---------------------------------------
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needleall_input1.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needleall_input1.fa	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,62 @@
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGAC
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGA
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGACATG
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGANN
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAGTCCGACATG
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGACGGCATACGA
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGTCCGACGATC
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needleall_input2.fq
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needleall_input2.fq	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,100 @@
+@FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGATGTTTA
++FC12044_91407_8_200_406_24
+SXXTXXXXXXXXXTTSUXSSXKTMQ
+@FC12044_91407_8_200_720_610
+CTCTGTGGCACCCCATCCCTCACTT
++FC12044_91407_8_200_720_610
+OXXXXXXXXXXXXXXXXXTSXQTXU
+@FC12044_91407_8_200_345_133
+GATTTTTTAACAATAAACGTACATA
++FC12044_91407_8_200_345_133
+OQTOOSFORTFFFIIOFFFFFFFFF
+@FC12044_91407_8_200_106_131
+GTTGCCCAGGCTCGTCTTGAACTCC
++FC12044_91407_8_200_106_131
+XXXXXXXXXXXXXXSXXXXISTXQS
+@FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG
++FC12044_91407_8_200_916_471
+XXXXXXXXXXXXXXXUXXUSXXTXW
+@FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG
++FC12044_91407_8_200_57_85
+XFXMXSXXSXXXOSQROOSROFQIQ
+@FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG
++FC12044_91407_8_200_10_437
+USXSXXXXXXUXXXSXQXXUQXXKS
+@FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGAACGACT
++FC12044_91407_8_200_154_436
+MKKMQTSRXMSQTOMRFOOIFFFFF
+@FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGAGGGCTGCCG
++FC12044_91407_8_200_336_64
+STQMOSXSXSQXQXXKXXXKFXFFK
+@FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC
++FC12044_91407_8_200_620_233
+XXXXXXXXXXXXXXXXXXXXXSXSW
+@FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAGGCCCGCC
++FC12044_91407_8_200_902_349
+XMXSSXMXXSXQSXTSQXFKSKTOF
+@FC12044_91407_8_200_40_618
+CTGTCCCCACGGCGGGGGGGCCTGG
++FC12044_91407_8_200_40_618
+TXXXXSXXXXXXXXXXXXXRKFOXS
+@FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG
++FC12044_91407_8_200_83_511
+SOXXXXXUXXXXXXQKQKKROOQSU
+@FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT
++FC12044_91407_8_200_76_246
+XTXTUXXXXXRXXXTXXSUXSRFXQ
+@FC12044_91407_8_200_303_427
+TTGCGACAGAGTTTTGCTCTTGTCC
++FC12044_91407_8_200_303_427
+XXQROXXXXIXFQXXXOIQSSXUFF
+@FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC
++FC12044_91407_8_200_31_299
+XRXTSXXXRXXSXQQOXQTSQSXKQ
+@FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG
++FC12044_91407_8_200_553_135
+XSQQXXXXXXXXXXSXXMFFQXTKU
+@FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAGCGATTATCCT
++FC12044_91407_8_200_139_74
+RMXUSXTXXQXXQUXXXSQISISSO
+@FC12044_91407_8_200_108_33
+GTCATGGCGGCCCGCGCGGGGAGCG
++FC12044_91407_8_200_108_33
+OOOSSXXSXXOMKMOFMKFOKFFFF
+@FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG
++FC12044_91407_8_200_980_965
+TOSSRXXXSSMSXMOMXIRXOXFFS
+@FC12044_91407_8_200_981_857
+AACGAGGGGCGCGACTTGACCTTGG
++FC12044_91407_8_200_981_857
+RXMSSXXXXSXQXQXFSXQFQKMXS
+@FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGCCTTGGAC
++FC12044_91407_8_200_8_865
+XXXFKOROMKOORMIMRIIKKORFF
+@FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCACTCC
++FC12044_91407_8_200_292_484
+XQXOSXXXXXUXXXXIXXXXQTOXF
+@FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGGGGGGTT
++FC12044_91407_8_200_675_16
+OXTXXXSXXQXXOXXKMXXMXOKQF
+@FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAGCTCCCCT
++FC12044_91407_8_200_285_136
+OSXOQXXXXXSXXUXXTXXXXTRMS
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needleall_out.fasta
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needleall_out.fasta	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,3232 @@
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAG--AGCTCGTATGCCGTCTT---CTGCTTG
+>FC12044_91407_8_200_406_24
+--------GTTAGCTC-----CCACCTTAAGATGTTTA
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTT---TCCCTACACGACGCTCTTCCGATCT---
+>FC12044_91407_8_200_406_24
+-----GTTAGCTCCC-AC--------CTTAAGATGTTTA
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_406_24
+---GTTA--GCTCCCACCTTAAGATGTTTA------------------------------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACG--AGCT-----CTTCCGATCT---
+>FC12044_91407_8_200_406_24
+-------------------GTTAGCTCCCACCTTAAGATGTTTA
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTT---TCCCTACACGACGCTCTTCCGATCT---
+>FC12044_91407_8_200_406_24
+-----GTTAGCTCCC-AC--------CTTAAGATGTTTA
+>Illumina_Paired_End_DNA_Adapters1_1
+-----------------GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGAT----------GTTTA--------------
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTT---TCCCTACACGACGCTCTTCCGATCT---
+>FC12044_91407_8_200_406_24
+-----GTTAGCTCCC-AC--------CTTAAGATGTTTA
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_406_24
+---GTTA--GCTCCCACCTTAAGATGTTTA------------------------------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGT---CTCGGCATTCCTGCTGAACCGCTCTTCCG
+ATCT---
+>FC12044_91407_8_200_406_24
+--------------------------GTTAGCTC---------------CCAC-CTTAAG
+ATGTTTA
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTT---TCCCTACACGACGCTCTTCCGATCT---
+>FC12044_91407_8_200_406_24
+-----GTTAGCTCCC-AC--------CTTAAGATGTTTA
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGT---CTCGGCATTCCTGCTGAACCGCTCTTCCGATCT---
+>FC12044_91407_8_200_406_24
+--GTTAGCTC---------------CCAC-CTTAAGATGTTTA
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC------------
+>FC12044_91407_8_200_406_24
+----GT-------TAG--CTCCCACCTTAAGATGTTTA
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-TCCGAC-------------
+>FC12044_91407_8_200_406_24
+-----------GTT----AGCTCCCACCTTAAGATGTTTA
+>Illumina_DpnII_Gex_Adapters2_1
+--------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA---
+>Illumina_DpnII_Gex_Adapters2_2
+------TCGTATGCCGTCTT---CTGCTTG
+>FC12044_91407_8_200_406_24
+GTTAGCTC-----CCACCTTAAGATGTTTA
+>Illumina_DpnII_Gex_PCR_Primer_1
+--------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA---
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA
+>FC12044_91407_8_200_406_24
+---GTTA--GCTCCCACC------TTAAGATGTT-TA--------
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-TCCGAC-----GATC----
+>FC12044_91407_8_200_406_24
+-------------GTT----AGCTCCCACCTTAAGATGTTTA
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTG-TAGAACTCTGAAC------------
+>FC12044_91407_8_200_406_24
+-------GTTAG--CTCCCACCTTAAGATGTTTA
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-TCCGAC------ATG----
+>FC12044_91407_8_200_406_24
+-----------GTT----AGCTCCCACCTTAAGATGTTTA
+>Illumina_NlaIII_Gex_Adapters2_1
+--------CAAGCAGAAGACGGCATACGANN
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA-----
+>Illumina_NlaIII_Gex_Adapters2_2
+------TCGTATGCCGTCTT---CTGCTTG
+>FC12044_91407_8_200_406_24
+GTTAGCTC-----CCACCTTAAGATGTTTA
+>Illumina_NlaIII_Gex_PCR_Primer_1
+--------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA---
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA
+>FC12044_91407_8_200_406_24
+---GTTA--GCTCCCACC------TTAAGATGTT-TA--------
+>Illumina_NlaIII_Gex_sequencing_primer
+-------CCGACAGGTTCAGA-GTTCTACAGTCCGACATG
+>FC12044_91407_8_200_406_24
+GTTAGCTCC--CACCTTAAGATGTT-TA------------
+>Illumina_Small_RNA_RT_Primer
+--------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA---
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAG-TCCGAC-----GATC----
+>FC12044_91407_8_200_406_24
+-------GTT----AGCTCCCACCTTAAGATGTTTA
+>Illumina_Small_RNA_3p_Adapter
+------TCGTATGCCGTCTTCTGCTTGT---
+>FC12044_91407_8_200_406_24
+GTTAGCTC-----CCACCTTAAG-ATGTTTA
+>Illumina_Small_RNA_PCR_Primer_1
+--------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_406_24
+GTTAGCTCCCACCTTAAGA-TGTTTA---
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA
+>FC12044_91407_8_200_406_24
+---GTTA--GCTCCCACC------TTAAGATGTT-TA--------
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-TCCGAC-----GATC----
+>FC12044_91407_8_200_406_24
+-------------GTT----AGCTCCCACCTTAAGATGTTTA
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATG-----CCGT------CTTCTGCTTG
+>FC12044_91407_8_200_720_610
+-----------CTC-TGTGGCACCCCATCCCTCACTT-------
+>Illumina_Genomic_DNA_Adapters1_2
+-------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_720_610
+CTCTGTGGCACCCCATCCCT--------CACTT-------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_720_610
+---------------------CTCTGTGGCACCCCATCCCT--------CACTT------
+-
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCT------TCCGATCT-------
+>FC12044_91407_8_200_720_610
+----------------------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_Genomic_DNA_sequencing_primer
+-------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_720_610
+CTCTGTGGCACCCCATCCCT--------CACTT-------
+>Illumina_Paired_End_DNA_Adapters1_2
+-------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_720_610
+CTCTGTGGCACCCCATCCCT--------CACTT-------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_720_610
+---------------------CTCTGTGGCACCCCATCCCT--------CACTT------
+-
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTC---GGCATTCCTGCTGAACCGCTCTTCCG
+ATCT
+>FC12044_91407_8_200_720_610
+----------------------------CTCTGTGGCACCCCATC----CCTCACTT---
+----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+-------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_720_610
+CTCTGTGGCACCCCATCCCT--------CACTT-------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTC---GGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_720_610
+----CTCTGTGGCACCCCATC----CCTCACTT-------
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCT---GAAC--------------
+>FC12044_91407_8_200_720_610
+------------------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGAC--------------
+>FC12044_91407_8_200_720_610
+--------------CT-CTGTGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGAC-----GGCATACGA----------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG------------------
+>FC12044_91407_8_200_720_610
+------------CTCTG--TGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGAC-----GGCATACGA----------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGT-----CCGA----------
+>FC12044_91407_8_200_720_610
+---------------------------------CT-CTGTGGCACCCCATCCCTCACTT
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------
+>FC12044_91407_8_200_720_610
+----------------CT-CTGTGGCACC--CCATCCCTCACTT
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCT---GAAC--------------
+>FC12044_91407_8_200_720_610
+-------------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGT-----CCGACATG--------
+>FC12044_91407_8_200_720_610
+--------------CT-CTGTGGCACCC--CATCCCTCACTT
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGAC-----GGCATACGANN--------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG------------------
+>FC12044_91407_8_200_720_610
+------------CTCTG--TGGCACCCCATCCCTCACTT
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGAC-----GGCATACGA----------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGT-----CCGA----------
+>FC12044_91407_8_200_720_610
+---------------------------------CT-CTGTGGCACCCCATCCCTCACTT
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAGT-----CCGACATG--------
+>FC12044_91407_8_200_720_610
+-----------------CT-CTGTGGCACCC--CATCCCTCACTT
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGAC-----GGCATACGA----------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGT----CCGACGATC--------
+>FC12044_91407_8_200_720_610
+----------CT-CTGTGGCACC--CCATCCCTCACTT
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCT-TGT-------------------
+>FC12044_91407_8_200_720_610
+-----------------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGAC-----GGCATACGA----------
+>FC12044_91407_8_200_720_610
+-----------CTCTGTGGCACCCCATCCCTCACTT
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGT-----CCGA----------
+>FC12044_91407_8_200_720_610
+---------------------------------CT-CTGTGGCACCCCATCCCTCACTT
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------
+>FC12044_91407_8_200_720_610
+----------------CT-CTGTGGCACC--CCATCCCTCACTT
+>Illumina_Genomici_DNA_Adapters1_1
+GAT--------------CGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAATAAACGTA------CATA----------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT--------------------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Genomic_DNA_PCR_Primers1_1
+-----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTC
+TTCCGATCT
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAAT-AAACG---------------TACA---------TA----------
+---------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+----------CAAGCAGAAGACG-GCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA----------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT--------------------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG----------------------
+>FC12044_91407_8_200_345_133
+-----------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT--------------------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+-----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTC
+TTCCGATCT
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAAT-AAACG---------------TACA---------TA----------
+---------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+----------CAAGCAGAAGACG-GCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG
+CTCTTCCGATCT
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA-------------------------------
+------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT--------------------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT--------------------
+>FC12044_91407_8_200_345_133
+--------------------------------GATTTTTTAACAATAAACGTACATA
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC-------
+>FC12044_91407_8_200_345_133
+--------GATTTTTTAACAATAAACGTACATA
+>Illumina_DpnII_Gex_Adapters1_2
+--------------ACAGGTTCAGAGTTCTACAGTCCGAC
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAATAAACGTACATA---------------
+>Illumina_DpnII_Gex_Adapters2_1
+----------CAAGCAGAAGACG-GCATACGA
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA---
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG--------------------
+>FC12044_91407_8_200_345_133
+----------------GATTTTTTAACAATAAACGTACATA
+>Illumina_DpnII_Gex_PCR_Primer_1
+----------CAAGCAGAAGACG-GCATACGA
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA---
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCT--ACAGTCCGA----------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAAT---AAACGTACATA
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCT--ACAGTCCGACGATC---
+>FC12044_91407_8_200_345_133
+-----------GATTTTTTAACAAT-AAACGTACATA
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC-------
+>FC12044_91407_8_200_345_133
+---GATTTTTTAACAATAAACGTACATA
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCT--ACAGT---CCGACATG
+>FC12044_91407_8_200_345_133
+---------GATTTTTTAACAATAAACGTACATA
+>Illumina_NlaIII_Gex_Adapters2_1
+----------CAAGCAGAAGACG-GCATACGANN
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA-----
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG--------------------
+>FC12044_91407_8_200_345_133
+----------------GATTTTTTAACAATAAACGTACATA
+>Illumina_NlaIII_Gex_PCR_Primer_1
+----------CAAGCAGAAGACG-GCATACGA
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA---
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCT--ACAGTCCGA----------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAAT---AAACGTACATA
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCT--ACAGT---CCGACATG
+>FC12044_91407_8_200_345_133
+------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Small_RNA_RT_Primer
+----------CAAGCAGAAGACG-GCATACGA
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA---
+>Illumina_Small_RNA_5p_Adapter
+------------------GTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAATAAACGTACATA-------------------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT-------------------
+>FC12044_91407_8_200_345_133
+----------------GATTTTTTAACAATAAACGTACATA
+>Illumina_Small_RNA_PCR_Primer_1
+----------CAAGCAGAAGACG-GCATACGA
+>FC12044_91407_8_200_345_133
+GATTTTTTAACAA----TAAACGTACATA---
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCT--ACAGTCCGA----------
+>FC12044_91407_8_200_345_133
+----------------------------GATTTTTTAACAAT---AAACGTACATA
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCT--ACAGTCCGACGATC---
+>FC12044_91407_8_200_345_133
+-----------GATTTTTTAACAAT-AAACGTACATA
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGC-------CGTCTT---CTGCTTG
+>FC12044_91407_8_200_106_131
+--------------GT-TGCCCAGGCTCGTCTTGAACTCC---
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTC-CGATCT--
+>FC12044_91407_8_200_106_131
+-----GTTGCCC------AGGCTCGTCTTGAACTCC
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTC-CGATCT-
+-
+>FC12044_91407_8_200_106_131
+------------------------------GTTGCCC------AGGCTCGTCTTGAACTC
+C
+>Illumina_Genomic_DNA_PCR_Primers1_2
+-----CAAGCAGAAGACGGCATACGAGCTCTTC-CGATCT--
+>FC12044_91407_8_200_106_131
+GTTGCCCAG-----------------GCTCGTCTTGAACTCC
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTTC-CGATCT--
+>FC12044_91407_8_200_106_131
+-----GTTGCCC------AGGCTCGTCTTGAACTCC
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG----------------
+>FC12044_91407_8_200_106_131
+-------------GT----------TGCCCAGGCTCGTCTTGAACTCC
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTC-CGATCT--
+>FC12044_91407_8_200_106_131
+-----GTTGCCC------AGGCTCGTCTTGAACTCC
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTC-CGATCT-
+-
+>FC12044_91407_8_200_106_131
+------------------------------GTTGCCC------AGGCTCGTCTTGAACTC
+C
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGT---CTCGGCATTCCTGCTGAACCGCTCTTCCG
+ATCT
+>FC12044_91407_8_200_106_131
+--------------------------GTTGCCCAGGC--TCGTCTTGAAC------TCC-
+----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTTC-CGATCT--
+>FC12044_91407_8_200_106_131
+-----GTTGCCC------AGGCTCGTCTTGAACTCC
+>Illumina_Paired_End_DNA_sequencing_primer_2
+------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGCTCG-------TCTTGAAC------TCC-----
+>Illumina_DpnII_Gex_Adapters1_1
+---------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGCTCGTC------TTGAACTCC----
+>Illumina_DpnII_Gex_Adapters1_2
+-----ACAGGTTCAGAGTTCTACAGTCCGAC
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGCTC---GTCTTGAACTCC---
+>Illumina_DpnII_Gex_Adapters2_1
+------CAAGCAGAAGACGGCATACGA-----
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGC-------CGTCTT---CTGCTTG
+>FC12044_91407_8_200_106_131
+--GT-TGCCCAGGCTCGTCTTGAACTCC---
+>Illumina_DpnII_Gex_PCR_Primer_1
+------CAAGCAGAAGACGGCATACGA-----
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT---CAGAGT--TCT---ACAGTCCGA
+>FC12044_91407_8_200_106_131
+-----------------------GTTGCCCAGGCTCGTCTTGAAC--TCC--
+>Illumina_DpnII_Gex_sequencing_primer
+-----CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_106_131
+GTTGCC--CAGGCTC---GTCTTGAACTCC-------
+>Illumina_NlaIII_Gex_Adapters1_1
+-----------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGCTCG---TCTTGAACTCC----
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTC-CGACATG------
+>FC12044_91407_8_200_106_131
+-----------GTTGCCCAGGCTCGTCTTGAACTCC
+>Illumina_NlaIII_Gex_Adapters2_1
+------CAAGCAGAAGACGGCATACGANN---
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGC-------CGTCTT---CTGCTTG
+>FC12044_91407_8_200_106_131
+--GT-TGCCCAGGCTCGTCTTGAACTCC---
+>Illumina_NlaIII_Gex_PCR_Primer_1
+------CAAGCAGAAGACGGCATACGA-----
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT---CAGAGT--TCT---ACAGTCCGA
+>FC12044_91407_8_200_106_131
+-----------------------GTTGCCCAGGCTCGTCTTGAAC--TCC--
+>Illumina_NlaIII_Gex_sequencing_primer
+----CCGACAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_106_131
+GTTGCC--CAGGCTC---GTCTTGAACTCC------
+>Illumina_Small_RNA_RT_Primer
+------CAAGCAGAAGACGGCATACGA-----
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_Small_RNA_5p_Adapter
+GTT---CAGAGT--TCT---ACAGTCCGACGATC
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGCTCGTCTTGAAC--TCC-------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGC-------CGTCTT---CTGCTTGT
+>FC12044_91407_8_200_106_131
+--GT-TGCCCAGGCTCGTCTTGAACTCC----
+>Illumina_Small_RNA_PCR_Primer_1
+------CAAGCAGAAGACGGCATACGA-----
+>FC12044_91407_8_200_106_131
+GTTGCCCAGGC-----TCGTCTT--GAACTCC
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT---CAGAGT--TCT---ACAGTCCGA
+>FC12044_91407_8_200_106_131
+-----------------------GTTGCCCAGGCTCGTCTTGAAC--TCC--
+>Illumina_Small_RNA_sequencing_primer
+-----CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_106_131
+GTTGCC--CAGGCTC---GTCTTGAACTCC-------
+>Illumina_Genomici_DNA_Adapters1_1
+-GATCGGAAGAGCTCGTATGCCGT---CTTCTGCTTG
+>FC12044_91407_8_200_916_471
+TGAT-TGAAG-----GTAGG--GTAGCATACTG----
+>Illumina_Genomic_DNA_Adapters1_2
+-------------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG---------------------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+------AATG---------ATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC
+GCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG-----------------------------------
+-------------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+-----CAAGCAGAAGACG---GCATAC-GAGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG--------------
+>Illumina_Genomic_DNA_sequencing_primer
+-------------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG---------------------------
+>Illumina_Paired_End_DNA_Adapters1_1
+-GATCGGAAG--AGCGGTTCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_916_471
+TGAT-TGAAGGTAG-GGT--AGCA-TACTG-----
+>Illumina_Paired_End_DNA_Adapters1_2
+-------------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG---------------------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+------AATG---------ATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC
+GCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG-----------------------------------
+-------------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+-----CAAGCAGAAGACG---GCATAC-GAGATCGGTCTCGGCATTCCTGCTGAACCGCT
+CTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-------------------------------
+----------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+-------------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGTAGCATACTG---------------------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+------------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGGGT---AGCA-TACTG--------------------
+>Illumina_DpnII_Gex_Adapters1_1
+-----GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGG---GTAGCATACTG---
+>Illumina_DpnII_Gex_Adapters1_2
+------ACAGGTTCAGAGT--TCTACAGTCCGAC
+>FC12044_91407_8_200_916_471
+TGATTGA-AGGT--AGGGTAGCATACTG------
+>Illumina_DpnII_Gex_Adapters2_1
+-----CAAGCAGAAGACG---GCATAC-GA
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-------------------
+>FC12044_91407_8_200_916_471
+---------------TGATTGAAGGTAGGGTAGCATACTG
+>Illumina_DpnII_Gex_PCR_Primer_1
+-----CAAGCAGAAGACG---GCATAC-GA
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGT--TCTACAGTCCGA
+>FC12044_91407_8_200_916_471
+--TGAT----TGA--------AGGT--AGGGTAGCATACTG-----
+>Illumina_DpnII_Gex_sequencing_primer
+----CGACAGGTTCAGAGT--TCTACAGTCCGACGATC
+>FC12044_91407_8_200_916_471
+TGATTGA-AGGT--AGGGTAGCATACTG----------
+>Illumina_NlaIII_Gex_Adapters1_1
+----------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_916_471
+TGATTGAAGGTAGG---GTAGCATACTG---
+>Illumina_NlaIII_Gex_Adapters1_2
+------ACAGGTTCAGAGT--TCTACAGTCCGACATG
+>FC12044_91407_8_200_916_471
+TGATTGA-AGGT--AGGGTAGCATACTG---------
+>Illumina_NlaIII_Gex_Adapters2_1
+-----CAAGCAGAAGACG---GCATAC-GANN
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG---
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-------------------
+>FC12044_91407_8_200_916_471
+---------------TGATTGAAGGTAGGGTAGCATACTG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-----CAAGCAGAAGACG---GCATAC-GA
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGT--TCTACAGTCCGA
+>FC12044_91407_8_200_916_471
+--TGAT----TGA--------AGGT--AGGGTAGCATACTG-----
+>Illumina_NlaIII_Gex_sequencing_primer
+---CCGACAGGTTCAGAGT--TCTACAGTCCGACATG
+>FC12044_91407_8_200_916_471
+TGATTGA-AGGT--AGGGTAGCATACTG---------
+>Illumina_Small_RNA_RT_Primer
+-----CAAGCAGAAGACG---GCATAC-GA
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-
+>Illumina_Small_RNA_5p_Adapter
+---------GTTCAGAGT--TCTACAGTCCGACGATC
+>FC12044_91407_8_200_916_471
+TGATTGAAGGT--AGGGTAGCATACTG----------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT------------------
+>FC12044_91407_8_200_916_471
+---------------TGATTGAAGGTAGGGTAGCATACTG
+>Illumina_Small_RNA_PCR_Primer_1
+-----CAAGCAGAAGACG---GCATAC-GA
+>FC12044_91407_8_200_916_471
+TGATTGAAG--GTAG--GGTAGCATACTG-
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGT--TCTACAGTCCGA
+>FC12044_91407_8_200_916_471
+--TGAT----TGA--------AGGT--AGGGTAGCATACTG-----
+>Illumina_Small_RNA_sequencing_primer
+----CGACAGGTTCAGAGT--TCTACAGTCCGACGATC
+>FC12044_91407_8_200_916_471
+TGATTGA-AGGT--AGGGTAGCATACTG----------
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCGTCTTCTG------CTTG
+>FC12044_91407_8_200_57_85
+----------GCTCCAATAGCG----CAGAGGAAACCTG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTC---TTCCG--------ATCT-
+>FC12044_91407_8_200_57_85
+--------------------GCTCCAATAGCGCAGAGGAAACCTG
+>Illumina_Genomic_DNA_PCR_Primers1_1
+-----AATGATACGGCGACCACCGAG---ATCTACACTCTTTCCCTACACGACGCTCTTC
+CGATCT
+>FC12044_91407_8_200_57_85
+GCTCCAAT---------AGCGCAGAGGAAACCTG--------------------------
+------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+----CAA----GCAGAAGA---CGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG--------------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTC---TTCCG--------ATCT-
+>FC12044_91407_8_200_57_85
+--------------------GCTCCAATAGCGCAGAGGAAACCTG
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAA---TGCCGAG
+>FC12044_91407_8_200_57_85
+GCTC-CAATAGCG---CAG-AGGAAACCTG-----
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTC---TTCCG--------ATCT-
+>FC12044_91407_8_200_57_85
+--------------------GCTCCAATAGCGCAGAGGAAACCTG
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+-----AATGATACGGCGACCACCGAG---ATCTACACTCTTTCCCTACACGACGCTCTTC
+CGATCT
+>FC12044_91407_8_200_57_85
+GCTCCAAT---------AGCGCAGAGGAAACCTG--------------------------
+------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+----CAA----GCAGAAGA---CGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG
+CTCTTCCGATCT
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-----------------------------------
+------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTC---TTCCG--------ATCT-
+>FC12044_91407_8_200_57_85
+--------------------GCTCCAATAGCGCAGAGGAAACCTG
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATT-------------CCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_57_85
+---GCTC--CAATAGCGCAGAGGAAACCTG--------------------
+>Illumina_DpnII_Gex_Adapters1_1
+--------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGA-----GGA------AAC-CTG---
+>Illumina_DpnII_Gex_Adapters1_2
+------ACAG-GTTCAGAGTTCTACAGTCCGAC-----
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_DpnII_Gex_Adapters2_1
+----CAA----GCAGAAGA---CGGCATACGA
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-------
+>Illumina_DpnII_Gex_Adapters2_2
+--TCGTATGCCGTCTTCTG------CTTG
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG----CAGAGGAAACCTG
+>Illumina_DpnII_Gex_PCR_Primer_1
+----CAA----GCAGAAGA---CGGCATACGA
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAG-GTTCAGAGTTCTACAGTCCGA------
+>FC12044_91407_8_200_57_85
+-------------GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_DpnII_Gex_sequencing_primer
+----------CGACAGGTTCAGAGTTCTACAGTCCGACGATC---
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG-------CAGAG-----------GA--AACCTG
+>Illumina_NlaIII_Gex_Adapters1_1
+-------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG---
+>Illumina_NlaIII_Gex_Adapters1_2
+------ACAG-GTTCAGAGTTCTACAGTCCG--ACATG
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_NlaIII_Gex_Adapters2_1
+----CAA----GCAGAAGA---CGGCATACGANN
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG---------
+>Illumina_NlaIII_Gex_Adapters2_2
+--TCGTATGCCGTCTTCTG------CTTG
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG----CAGAGGAAACCTG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+----CAA----GCAGAAGA---CGGCATACGA
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAG-GTTCAGAGTTCTACAGTCCGA------
+>FC12044_91407_8_200_57_85
+-------------GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_NlaIII_Gex_sequencing_primer
+---CCGACAG-GTTCAGAGTTCTACAGTCCG--ACATG
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_Small_RNA_RT_Primer
+----CAA----GCAGAAGA---CGGCATACGA
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-------
+>Illumina_Small_RNA_5p_Adapter
+---------GTTCAGAGTTCTACAGTCCGACGATC---
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAG-----------GA--AACCTG
+>Illumina_Small_RNA_3p_Adapter
+--TCGTATGCCGTCTTCTG------CTTGT
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG----CAGAGGAAACCTG-
+>Illumina_Small_RNA_PCR_Primer_1
+----CAA----GCAGAAGA---CGGCATACGA
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCGCAGAGGAAACCTG-------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAG-GTTCAGAGTTCTACAGTCCGA------
+>FC12044_91407_8_200_57_85
+-------------GCTCCAATAGCG--CAGAG-----------GAAACCTG
+>Illumina_Small_RNA_sequencing_primer
+----------CGACAGGTTCAGAGTTCTACAGTCCGACGATC---
+>FC12044_91407_8_200_57_85
+GCTCCAATAGCG-------CAGAG-----------GA--AACCTG
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_10_437
+-------------------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------
+>FC12044_91407_8_200_10_437
+--------------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT
+----------
+>FC12044_91407_8_200_10_437
+---------------------------------------------GCTGCTTGGGAGGCT
+GAGGCAGGAG
+>Illumina_Genomic_DNA_PCR_Primers1_2
+---------------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG------------------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------
+>FC12044_91407_8_200_10_437
+--------------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Paired_End_DNA_Adapters1_1
+---GATCGGAAGAGCGGTTCA-GCAGGAATGCCGAG
+>FC12044_91407_8_200_10_437
+GCTGCTTGG----GAGGCTGAGGCAGGAG-------
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------
+>FC12044_91407_8_200_10_437
+--------------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT
+----------
+>FC12044_91407_8_200_10_437
+---------------------------------------------GCTGCTTGGGAGGCT
+GAGGCAGGAG
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+---------------CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGA
+ACCGCTCTTCCGATCT
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------------------------------
+----------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------
+>FC12044_91407_8_200_10_437
+--------------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGA-TCT----------
+>FC12044_91407_8_200_10_437
+----------------GCTG-------CTTGGGAGGCTGAGGCAGGAG
+>Illumina_DpnII_Gex_Adapters1_1
+---------GATCGTCGGA--CTGTAGAACTCTGAAC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGA--GGCTGAGGCAGGAG----------
+>Illumina_DpnII_Gex_Adapters1_2
+------------------ACAGGTTCAGAGTTCTACAGTCCGAC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGG---AG----------------
+>Illumina_DpnII_Gex_Adapters2_1
+---------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_10_437
+-------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_DpnII_Gex_PCR_Primer_1
+---------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_10_437
+---GCTGCTTGGGAGGCTGA-----GGCAGG---AG---------------
+>Illumina_DpnII_Gex_sequencing_primer
+----------------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGG---AG--------------------
+>Illumina_NlaIII_Gex_Adapters1_1
+------TCGGA--------CTGTAGAACTCTGAAC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG----------
+>Illumina_NlaIII_Gex_Adapters1_2
+------------------ACAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGG---AG-------------------
+>Illumina_NlaIII_Gex_Adapters2_1
+---------------CAAGCAGAAGACGGCATACGANN
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-------------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_10_437
+-------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+---------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_10_437
+---GCTGCTTGGGAGGCTGA-----GGCAGG---AG---------------
+>Illumina_NlaIII_Gex_sequencing_primer
+-------------CCGA--CAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGG---AG-------------------
+>Illumina_Small_RNA_RT_Primer
+---------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------
+>Illumina_Small_RNA_5p_Adapter
+------------GTTCA-----GAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG------------------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT----------------
+>FC12044_91407_8_200_10_437
+-------------GCTGCTTGGGAGGCTGAGGCAGGAG
+>Illumina_Small_RNA_PCR_Primer_1
+---------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGGAG-----------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_10_437
+---GCTGCTTGGGAGGCTGA-----GGCAGG---AG---------------
+>Illumina_Small_RNA_sequencing_primer
+----------------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_10_437
+GCTGCTTGGGAGGCTGAGGCAGG---AG--------------------
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGC-TCGTATGC------CGTCTTCTGCTTG
+>FC12044_91407_8_200_154_436
+-------AGACCTTTGGATACAATGAACGACT--------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTAC-----ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+AGAC-CTTTGGATACAATGAACGACT------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTAC-----ACGACGCTCTTCCGA
+TCT
+>FC12044_91407_8_200_154_436
+-------------------------AGAC-CTTTGGATACAATGAACGACT---------
+---
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGAC----GGCATAC---GAGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGA------ACGA-CT
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTAC-----ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+AGAC-CTTTGGATACAATGAACGACT------------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGC----GGTTCAGCAGGAATGCCGAG-
+>FC12044_91407_8_200_154_436
+-------AGACCTTTGGATACA--ATGAA---CGACT
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTAC-----ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+AGAC-CTTTGGATACAATGAACGACT------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTAC-----ACGACGCTCTTCCGA
+TCT
+>FC12044_91407_8_200_154_436
+-------------------------AGAC-CTTTGGATACAATGAACGACT---------
+---
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGAC----GGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCC
+GATCT
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAA---------------------TGAACGACT-----
+-----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTAC-----ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+AGAC-CTTTGGATACAATGAACGACT------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTG------CTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_154_436
+------AGACCTT--TGGATACAATGAACGACT----------
+>Illumina_DpnII_Gex_Adapters1_1
+-GATCGTCGGACTGTAGAACTCTGAAC----
+>FC12044_91407_8_200_154_436
+AGACCTTTGGA---TACAA---TGAACGACT
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACA--GTCCGAC-
+>FC12044_91407_8_200_154_436
+AGACCTTTGGA----TACAATGAACGACT
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGAC----GGCATACGA---------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_DpnII_Gex_Adapters2_2
+------TCGTATGC------CGTCTTCTGCTTG
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGAACGACT--------
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGAC----GGCATACGA---------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_DpnII_Gex_PCR_Primer_2
+--------------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGA-ACGACT--------------------------------
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACA--GTCCGACGATC
+>FC12044_91407_8_200_154_436
+--AGACCTTTGGA----TACAATGAACGACT---
+>Illumina_NlaIII_Gex_Adapters1_1
+------TCGGACTGTAGAACTCTGAAC----
+>FC12044_91407_8_200_154_436
+AGACCTTTGGA---TACAA---TGAACGACT
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACA--GTCCGACATG
+>FC12044_91407_8_200_154_436
+AGACCTTTGGA----TACAATGAACGACT--
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGAC----GGCATACGANN-------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_NlaIII_Gex_Adapters2_2
+------TCGTATGC------CGTCTTCTGCTTG
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGAACGACT--------
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGAC----GGCATACGA---------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_NlaIII_Gex_PCR_Primer_2
+--------------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGA-ACGACT--------------------------------
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACA--GTCCGACATG
+>FC12044_91407_8_200_154_436
+---AGACCTTTGGA----TACAATGAACGACT--
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGAC----GGCATACGA---------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTT----CTACA--GTCCGACGATC
+>FC12044_91407_8_200_154_436
+----AGACCTTTGGATACAATGAACGACT---
+>Illumina_Small_RNA_3p_Adapter
+------TCGTATGC------CGTCTTCTGCTTGT
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGAACGACT---------
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGAC----GGCATACGA---------
+>FC12044_91407_8_200_154_436
+--------AGACCTTTGG-ATACAATGAACGACT
+>Illumina_Small_RNA_PCR_Primer_2
+--------------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_154_436
+AGACCTTTGGATACAATGA-ACGACT--------------------------------
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACA--GTCCGACGATC
+>FC12044_91407_8_200_154_436
+--AGACCTTTGGA----TACAATGAACGACT---
+>Illumina_Genomici_DNA_Adapters1_1
+-----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGA---GGAGGGC-----TGCCG-----------
+>Illumina_Genomic_DNA_Adapters1_2
+-----ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAG---ATCTACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_336_64
+-------------------AGGGAATTT------------TAGAGGA-GGGCTGCCG---
+-
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCAT-----ACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+----------AGGGAATTTTAGAGGAGGGCTGCCG----
+>Illumina_Genomic_DNA_sequencing_primer
+-----ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGA---ATGCCGAG
+>FC12044_91407_8_200_336_64
+-------AGGGAATTTTAG-AGGAGGGCTGCCG--
+>Illumina_Paired_End_DNA_Adapters1_2
+-----ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAG---ATCTACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_336_64
+-------------------AGGGAATTT------------TAGAGGA-GGGCTGCCG---
+-
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCAT-----ACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTC
+CGATCT
+>FC12044_91407_8_200_336_64
+----------AGGGAATTTTAGAGGAG---GG-----------CTGCCG-----------
+------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+-----ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCT---------GCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_336_64
+-----AGGGAATT--TTAGAGGAGGGCTG--CCG------------
+>Illumina_DpnII_Gex_Adapters1_1
+--------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGA-----GGGCTGCCG----------
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-------TCCGAC
+>FC12044_91407_8_200_336_64
+--AGG----GAATTTTAGAGGAGGGCTGCCG--
+>Illumina_DpnII_Gex_Adapters2_1
+CAAG-------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG-
+>Illumina_DpnII_Gex_Adapters2_2
+------TCGTA---------TGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGAGGGCTGCCG-----------
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAG-------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG-
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA---------
+>FC12044_91407_8_200_336_64
+---------------------AGG----GAATTTTAGAG---GAGGGCTGCCG
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-------TCCGACGATC
+>FC12044_91407_8_200_336_64
+----AGG----GAATTTTAGAGGAGGGCTGCCG------
+>Illumina_NlaIII_Gex_Adapters1_1
+--------------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGAGGGCTGCCG----------
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-------TCCGACATG
+>FC12044_91407_8_200_336_64
+--AGG----GAATTTTAGAGGAGGGCTGCCG-----
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAG-------CAGAAGACGGCATACGANN
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG---
+>Illumina_NlaIII_Gex_Adapters2_2
+------TCGTA---------TGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGAGGGCTGCCG-----------
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAG-------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG-
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA---------
+>FC12044_91407_8_200_336_64
+---------------------AGG----GAATTTTAGAG---GAGGGCTGCCG
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAG-------TCCGACATG
+>FC12044_91407_8_200_336_64
+-----AGG----GAATTTTAGAGGAGGGCTGCCG-----
+>Illumina_Small_RNA_RT_Primer
+CAAG-------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG-
+>Illumina_Small_RNA_5p_Adapter
+GTTCA--GAGTTCTACAG-------TCCGACGATC
+>FC12044_91407_8_200_336_64
+----AGGGAATTTTAGAGGAGGGCTGCCG------
+>Illumina_Small_RNA_3p_Adapter
+------TCGTA---------TGCCGTCTTCTGCTTGT
+>FC12044_91407_8_200_336_64
+AGGGAATTTTAGAGGAGGGCTGCCG------------
+>Illumina_Small_RNA_PCR_Primer_1
+CAAG-------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_336_64
+--AGGGAATTTTAGAGGAGGGCTGCCG-
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA---------
+>FC12044_91407_8_200_336_64
+---------------------AGG----GAATTTTAGAG---GAGGGCTGCCG
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-------TCCGACGATC
+>FC12044_91407_8_200_336_64
+----AGG----GAATTTTAGAGGAGGGCTGCCG------
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_620_233
+-------------------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACG------ACGCTCTTCCGATCT-
+>FC12044_91407_8_200_620_233
+----------TCTCCATGTTGGTCAGGCT-----GGTCTC
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCTCTTCCGATCT
+-
+>FC12044_91407_8_200_620_233
+----------------------TCTCCA-TGTTGGTC--------AGGCT-----GGTCT
+C
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT----------------
+>FC12044_91407_8_200_620_233
+-----------------------TCT--CCATGTTGGTCAGGCTGGTCTC
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACG------ACGCTCTTCCGATCT-
+>FC12044_91407_8_200_620_233
+----------TCTCCATGTTGGTCAGGCT-----GGTCTC
+>Illumina_Paired_End_DNA_Adapters1_1
+----------GATCGGAAGAGC-GGT-TCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAG----GCTGGTCTC---------------
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACG------ACGCTCTTCCGATCT-
+>FC12044_91407_8_200_620_233
+----------TCTCCATGTTGGTCAGGCT-----GGTCTC
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCTCTTCCGATCT
+-
+>FC12044_91407_8_200_620_233
+----------------------TCTCCA-TGTTGGTC--------AGGCT-----GGTCT
+C
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCAT-----TCCTGCTGAACCG-CTCTT
+CCGATCT
+>FC12044_91407_8_200_620_233
+---------------------------TCTC--CATGTTGGTCAGGCTG----GTCTC--
+-------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACG------ACGCTCTTCCGATCT-
+>FC12044_91407_8_200_620_233
+----------TCTCCATGTTGGTCAGGCT-----GGTCTC
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCAT-----TCCTGCTGAACCG-CTCTTCCGATCT
+>FC12044_91407_8_200_620_233
+---TCTC--CATGTTGGTCAGGCTG----GTCTC---------
+>Illumina_DpnII_Gex_Adapters1_1
+-------GATCGTCGGACT-GTAGAACTCTGAAC
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGT----CTC-----
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACA-----GTCCGAC-------
+>FC12044_91407_8_200_620_233
+-------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_DpnII_Gex_Adapters2_1
+-------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC---------
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_620_233
+-------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_DpnII_Gex_PCR_Primer_1
+-------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC---------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA-----GTCCGA--------
+>FC12044_91407_8_200_620_233
+--------------------------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--
+>FC12044_91407_8_200_620_233
+---------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_NlaIII_Gex_Adapters1_1
+------------TCGGACT-GTAGAACTCTGAAC
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGT----CTC-----
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACA-----GTCCGACATG-----
+>FC12044_91407_8_200_620_233
+-------------TCTCCATGTTGGTCAGGC-TGGTCTC
+>Illumina_NlaIII_Gex_Adapters2_1
+-------------CAAGCAGAAGACGGCATACGANN
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC-----------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_620_233
+-------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC---------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA-----GTCCGA--------
+>FC12044_91407_8_200_620_233
+--------------------------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACA-----GTCCGACATG-----
+>FC12044_91407_8_200_620_233
+----------------TCTCCATGTTGGTCAGGC-TGGTCTC
+>Illumina_Small_RNA_RT_Primer
+-------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC---------
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACA-----GTCCGAC-GATC--
+>FC12044_91407_8_200_620_233
+---------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT----------------
+>FC12044_91407_8_200_620_233
+-------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_Small_RNA_PCR_Primer_1
+-------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_620_233
+TCTCCATGTTGGTCAGGCTGGTCTC---------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA-----GTCCGA--------
+>FC12044_91407_8_200_620_233
+--------------------------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--
+>FC12044_91407_8_200_620_233
+---------------TCTCCATGTTGGTCAGGCTGGTCTC
+>Illumina_Genomici_DNA_Adapters1_1
+----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGA-CGCAAG-GCCC----GCC------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACAC-----GACGC----TCTTCCGATCT
+>FC12044_91407_8_200_902_349
+------------TGAACGTCGAGACGCAAGGCCCGCC-----
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTACACGACGCTCT
+TCCGATCT
+>FC12044_91407_8_200_902_349
+--TGA-ACGTCGAGACGCAAGGCCCGCC--------------------------------
+--------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGA------AGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_902_349
+-----TGAACGTCGAGACG-----CAAGGCCCGCC-----
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACAC-----GACGC----TCTTCCGATCT
+>FC12044_91407_8_200_902_349
+------------TGAACGTCGAGACGCAAGGCCCGCC-----
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------------
+>FC12044_91407_8_200_902_349
+---------------------TGAACGTCGAGACGCAAGGCCCGCC
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACAC-----GACGC----TCTTCCGATCT
+>FC12044_91407_8_200_902_349
+------------TGAACGTCGAGACGCAAGGCCCGCC-----
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTACACGACGCTCT
+TCCGATCT
+>FC12044_91407_8_200_902_349
+--TGA-ACGTCGAGACGCAAGGCCCGCC--------------------------------
+--------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCG---GTCTCGGCATTCCTGCTGAACCGCTCTTCCG
+ATCT
+>FC12044_91407_8_200_902_349
+-----TGA--ACG----TCGAGA-CGCAAGGCCCGCC-----------------------
+----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACAC-----GACGC----TCTTCCGATCT
+>FC12044_91407_8_200_902_349
+------------TGAACGTCGAGACGCAAGGCCCGCC-----
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAA----------------CCGCTCTTCCGATCT
+>FC12044_91407_8_200_902_349
+------------------TGAACGTCGAGACGCAAGGCCCGCC----------
+>Illumina_DpnII_Gex_Adapters1_1
+-GATCGTCGGACTGTAGAACTCTGAAC-------
+>FC12044_91407_8_200_902_349
+TGAACGTCG------AGA---CGCAAGGCCCGCC
+>Illumina_DpnII_Gex_Adapters1_2
+---ACAGGTTCAGA-GTTCTACA--GTCCGAC
+>FC12044_91407_8_200_902_349
+TGAAC--GTCGAGACG-----CAAGGCCCGCC
+>Illumina_DpnII_Gex_Adapters2_1
+--------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-----
+>Illumina_DpnII_Gex_Adapters2_2
+-----------TCGTATG--CCGTCTTCTGCTTG
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAGGCCCGCC---------
+>Illumina_DpnII_Gex_PCR_Primer_1
+--------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-----
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGA----------CCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_902_349
+--TGA-ACGTCGAGACGCAAGGCCCGCC--------------------------
+>Illumina_DpnII_Gex_sequencing_primer
+-------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACG--CA-AG-------GCCCGCC----
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC--------------------
+>FC12044_91407_8_200_902_349
+----------------TGAACGTCGAGACGCAAGGCCCGCC
+>Illumina_NlaIII_Gex_Adapters1_2
+---ACAGGTTCAGA-GTTCTACA--GTCCGACATG
+>FC12044_91407_8_200_902_349
+TGAAC--GTCGAGACG-----CAAGGCCCGCC---
+>Illumina_NlaIII_Gex_Adapters2_1
+--------------CAAGCAGAAGACGGCATACGANN
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-------
+>Illumina_NlaIII_Gex_Adapters2_2
+-----------TCGTATG--CCGTCTTCTGCTTG
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAGGCCCGCC---------
+>Illumina_NlaIII_Gex_PCR_Primer_1
+--------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-----
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGA----------CCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_902_349
+--TGA-ACGTCGAGACGCAAGGCCCGCC--------------------------
+>Illumina_NlaIII_Gex_sequencing_primer
+------CCGACAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACG--CA-AG-------GCCCGCC---
+>Illumina_Small_RNA_RT_Primer
+--------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-----
+>Illumina_Small_RNA_5p_Adapter
+-----GTTCAGA-GTTCTACA--GTCCGACGATC
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACG-----CAAGGCCCGCC----
+>Illumina_Small_RNA_3p_Adapter
+-----------TCGTATG--CCGTCTTCTGCTTGT
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAGGCCCGCC----------
+>Illumina_Small_RNA_PCR_Primer_1
+--------------CAAGCAGAAGACGGCATACGA
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACGCAAG-----GCCCGCC-----
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGA----------CCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_902_349
+--TGA-ACGTCGAGACGCAAGGCCCGCC--------------------------
+>Illumina_Small_RNA_sequencing_primer
+-------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_902_349
+TGAACGTCGAGACG--CA-AG-------GCCCGCC----
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCGTCTTC----------TGCTTG-
+>FC12044_91407_8_200_40_618
+-------------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACG-------CTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+-----CTGTCCC--CACGGCGGGGGGGCCTGG--------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG-------CTCTTCC
+GATCT
+>FC12044_91407_8_200_40_618
+------------------------------CTGTCCC--CACGGCGGGGGGGCCTGG---
+-----
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT-----------------------
+>FC12044_91407_8_200_40_618
+--------------------------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACG-------CTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+-----CTGTCCC--CACGGCGGGGGGGCCTGG--------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGT----TCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_40_618
+-----------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACG-------CTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+-----CTGTCCC--CACGGCGGGGGGGCCTGG--------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG-------CTCTTCC
+GATCT
+>FC12044_91407_8_200_40_618
+------------------------------CTGTCCC--CACGGCGGGGGGGCCTGG---
+-----
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTC-----------GGCATTCCTGCTGAACCG
+CTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+------------------------CTGTCCCCACGGCGGGGGGG----CCTGG-------
+------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACG-------CTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+-----CTGTCCC--CACGGCGGGGGGGCCTGG--------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTC-----------GGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_40_618
+CTGTCCCCACGGCGGGGGGG----CCTGG-------------------
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC-------------------
+>FC12044_91407_8_200_40_618
+--------------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGT-CCGAC---------------
+>FC12044_91407_8_200_40_618
+-----------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_DpnII_Gex_Adapters2_1
+-------CAAGCAGAAGACGGCATACGA----------
+>FC12044_91407_8_200_40_618
+CTGTCCCC---------ACGG----CGGGGGGGCCTGG
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTC----------TGCTTG-
+>FC12044_91407_8_200_40_618
+-------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_DpnII_Gex_PCR_Primer_1
+-------CAAGCAGAAGACGGCATACGA----------
+>FC12044_91407_8_200_40_618
+CTGTCCCC---------ACGG----CGGGGGGGCCTGG
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA----------------
+-
+>FC12044_91407_8_200_40_618
+------------------------------------CTGTCCCCACGGCGGGGGGGCCTG
+G
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC------------------
+>FC12044_91407_8_200_40_618
+-------------------CTGTCC------CCACGGCGGGGGGGCCTGG
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC-------------------
+>FC12044_91407_8_200_40_618
+---------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGACATG--------------
+>FC12044_91407_8_200_40_618
+-----------------CTGTCC-CCACGGCGGGGGGGCCTGG
+>Illumina_NlaIII_Gex_Adapters2_1
+---------------------CAAGCAGAAGACGGCATACGANN
+>FC12044_91407_8_200_40_618
+CTGTCCCCACGGCGGGGGGGCCTGG-------------------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTC----------TGCTTG-
+>FC12044_91407_8_200_40_618
+-------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-------CAAGCAGAAGACGGCATACGA----------
+>FC12044_91407_8_200_40_618
+CTGTCCCC---------ACGG----CGGGGGGGCCTGG
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA----------------
+-
+>FC12044_91407_8_200_40_618
+------------------------------------CTGTCCCCACGGCGGGGGGGCCTG
+G
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAGTCCGACATG--------------
+>FC12044_91407_8_200_40_618
+--------------------CTGTCC-CCACGGCGGGGGGGCCTGG
+>Illumina_Small_RNA_RT_Primer
+-------CAAGCAGAAGACGGCATACGA----------
+>FC12044_91407_8_200_40_618
+CTGTCCCC---------ACGG----CGGGGGGGCCTGG
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGTCCGACGATC------------------
+>FC12044_91407_8_200_40_618
+-------------CTGTCC------CCACGGCGGGGGGGCCTGG
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT---------------------
+>FC12044_91407_8_200_40_618
+------------------CTGTCCCCACGGCGGGGGGGCCTGG
+>Illumina_Small_RNA_PCR_Primer_1
+-------CAAGCAGAAGACGGCATACGA----------
+>FC12044_91407_8_200_40_618
+CTGTCCCC---------ACGG----CGGGGGGGCCTGG
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA----------------
+-
+>FC12044_91407_8_200_40_618
+------------------------------------CTGTCCCCACGGCGGGGGGGCCTG
+G
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC------------------
+>FC12044_91407_8_200_40_618
+-------------------CTGTCC------CCACGGCGGGGGGGCCTGG
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_83_511
+-----GATGTACTCTTACACCCAGACTT-TG----
+>Illumina_Genomic_DNA_Adapters1_2
+---ACACTCTTTCCCTACAC---GAC---GCTCTTCCGATCT
+>FC12044_91407_8_200_83_511
+GATGTACTCT-----TACACCCAGACTTTG------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GAC---GCTCTTCCG
+ATCT
+>FC12044_91407_8_200_83_511
+--------------------GATGTACTCT-------TACACCCAGACTTTG--------
+----
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTT-----CCGATCT---
+>FC12044_91407_8_200_83_511
+---------GATG---TA----CTCTTACACCCAGA-CTTTG
+>Illumina_Genomic_DNA_sequencing_primer
+---ACACTCTTTCCCTACAC---GAC---GCTCTTCCGATCT
+>FC12044_91407_8_200_83_511
+GATGTACTCT-----TACACCCAGACTTTG------------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATG----------CCGAG------
+>FC12044_91407_8_200_83_511
+-----------------------GATGTACTCTTACACCCAGACTTTG
+>Illumina_Paired_End_DNA_Adapters1_2
+---ACACTCTTTCCCTACAC---GAC---GCTCTTCCGATCT
+>FC12044_91407_8_200_83_511
+GATGTACTCT-----TACACCCAGACTTTG------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GAC---GCTCTTCCG
+ATCT
+>FC12044_91407_8_200_83_511
+--------------------GATGTACTCT-------TACACCCAGACTTTG--------
+----
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTT-----C
+CGATCT---
+>FC12044_91407_8_200_83_511
+----------------------------------------GATGTA---CTCTTACACCC
+AGA-CTTTG
+>Illumina_Paired_End_DNA_sequencing_primer_1
+---ACACTCTTTCCCTACAC---GAC---GCTCTTCCGATCT
+>FC12044_91407_8_200_83_511
+GATGTACTCT-----TACACCCAGACTTTG------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTT-----CCGATCT---
+>FC12044_91407_8_200_83_511
+----------------GATGTA---CTCTTACACCCAGA-CTTTG
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGA-AC----------
+>FC12044_91407_8_200_83_511
+--------GA-TGT---ACTCTTACACCCAGACTTTG
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGA-GTTC---TACAGTCCGAC----
+>FC12044_91407_8_200_83_511
+---------GATGTACTCTTACACCCAGACTTTG
+>Illumina_DpnII_Gex_Adapters2_1
+------------CAAGCAGA---AGACGGCATACGA
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-----------
+>Illumina_DpnII_Gex_Adapters2_2
+-------TCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTT-TG----
+>Illumina_DpnII_Gex_PCR_Primer_1
+------------CAAGCAGA---AGACGGCATACGA
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-----------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTC---TACAGTCCGA-----
+>FC12044_91407_8_200_83_511
+----------------------------GATGTACTCTTACACCCAGACTTTG
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGA-GTTC---TACAGTCCGAC---GATC
+>FC12044_91407_8_200_83_511
+-----------GATGTACTCTTACACCCAGACTTTG---
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGA-AC----------
+>FC12044_91407_8_200_83_511
+---GA-TGT---ACTCTTACACCCAGACTTTG
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGA-GTTC---TACAGTCCGACATG-
+>FC12044_91407_8_200_83_511
+---------GATGTACTCTTACACCCAGACTTTG
+>Illumina_NlaIII_Gex_Adapters2_1
+------------CAAGCAGA---AGACGGCATACGANN
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-------------
+>Illumina_NlaIII_Gex_Adapters2_2
+-------TCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTT-TG----
+>Illumina_NlaIII_Gex_PCR_Primer_1
+------------CAAGCAGA---AGACGGCATACGA
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-----------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTC---TACAGTCCGA-----
+>FC12044_91407_8_200_83_511
+----------------------------GATGTACTCTTACACCCAGACTTTG
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGA-GTTC---TACAGTCCGACATG-
+>FC12044_91407_8_200_83_511
+------------GATGTACTCTTACACCCAGACTTTG
+>Illumina_Small_RNA_RT_Primer
+------------CAAGCAGA---AGACGGCATACGA
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-----------
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGA-GTTC---TACAGTCCGAC---GATC
+>FC12044_91407_8_200_83_511
+-----GATGTACTCTTACACCCAGACTTTG---
+>Illumina_Small_RNA_3p_Adapter
+-------TCGTATGCC--GTCTTCTGCTTGT
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTT-TG-----
+>Illumina_Small_RNA_PCR_Primer_1
+------------CAAGCAGA---AGACGGCATACGA
+>FC12044_91407_8_200_83_511
+GATGTACTCTTACACCCAGACTTTG-----------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGA-GTTC---TACAGTCCGA-----
+>FC12044_91407_8_200_83_511
+----------------------------GATGTACTCTTACACCCAGACTTTG
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGA-GTTC---TACAGTCCGAC---GATC
+>FC12044_91407_8_200_83_511
+-----------GATGTACTCTTACACCCAGACTTTG---
+>Illumina_Genomici_DNA_Adapters1_1
+---------GATC--GGAAGAGCTC---GTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTG-----GCTCCCAGT-----------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTC------CGATCT-----------
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTC------CG
+ATCT-----------
+>FC12044_91407_8_200_76_246
+--------------------------------------------------TCAAGGGTGG
+ATCTTGGCTCCCAGT
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTTC------CGATCT-----------
+>FC12044_91407_8_200_76_246
+--------------------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTTC------CGATCT-----------
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATG---CCGAG-
+>FC12044_91407_8_200_76_246
+--TC--AAGGGTGGATC-------TTGGCTCCCAGT
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTC------CGATCT-----------
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTC------CG
+ATCT-----------
+>FC12044_91407_8_200_76_246
+--------------------------------------------------TCAAGGGTGG
+ATCTTGGCTCCCAGT
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCC---TGCTGAACCGCTCTTCC
+GATCT
+>FC12044_91407_8_200_76_246
+TCAAG-----------------GGTGGATCTTGGC--TCCCAGT----------------
+-----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTTC------CGATCT-----------
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_Paired_End_DNA_sequencing_primer_2
+--------CGGTCTCGGCATTCC---TGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGC--TCCCAGT---------------------
+>Illumina_DpnII_Gex_Adapters1_1
+---------GATCGTCGGACT----GTAGAACTCTGAAC
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTT--GGCTCCCAGT------------
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTC-AGAGT---TCT------ACAGTCCGAC
+>FC12044_91407_8_200_76_246
+------TCAAGGGTGGATCTTGGCTCCCAGT-----
+>Illumina_DpnII_Gex_Adapters2_1
+-CAAG----------------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT-------------
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTC-----TG---CTTG---------
+>FC12044_91407_8_200_76_246
+-------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_DpnII_Gex_PCR_Primer_1
+-CAAG----------------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT-------------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCT------ACAGTCCGA
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT----
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTC-AGAGT---TCT------ACAGTCCGACGATC
+>FC12044_91407_8_200_76_246
+--------TCAAGGGTGGATCTTGGCTCCCAGT---------
+>Illumina_NlaIII_Gex_Adapters1_1
+TC--GGACTGTAGAACTCTGAAC-----
+>FC12044_91407_8_200_76_246
+TCAAGG---GTGGATCTTGGCTCCCAGT
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTC-AGAGT---TCT------ACAGTCCGACATG
+>FC12044_91407_8_200_76_246
+------TCAAGGGTGGATCTTGGCTCCCAGT--------
+>Illumina_NlaIII_Gex_Adapters2_1
+-CAAG----------------CAGAAGACGGCATACGANN
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT---------------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTC-----TG---CTTG---------
+>FC12044_91407_8_200_76_246
+-------------TCAAGGGTGGATCTTGGCTCCCAGT
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-CAAG----------------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT-------------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCT------ACAGTCCGA
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT----
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTC-AGAGT---TCT------ACAGTCCGACATG
+>FC12044_91407_8_200_76_246
+---------TCAAGGGTGGATCTTGGCTCCCAGT--------
+>Illumina_Small_RNA_RT_Primer
+-CAAG----------------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT-------------
+>Illumina_Small_RNA_5p_Adapter
+GTTC-AGAGT---TCT------ACAGTCCGACGATC
+>FC12044_91407_8_200_76_246
+--TCAAGGGTGGATCTTGGCTCCCAGT---------
+>Illumina_Small_RNA_3p_Adapter
+TC------GTATGCCGTCTT--CTGCTTGT
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGA-----TCTTGGCTCCCAGT
+>Illumina_Small_RNA_PCR_Primer_1
+-CAAG----------------CAGAAGACGGCATACGA
+>FC12044_91407_8_200_76_246
+TCAAGGGTGGATCTTGGCTCCCAGT-------------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCT------ACAGTCCGA
+>FC12044_91407_8_200_76_246
+-------------------------TCAAGGGTGGATCTTGGCTCCCAGT----
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTC-AGAGT---TCT------ACAGTCCGACGATC
+>FC12044_91407_8_200_76_246
+--------TCAAGGGTGGATCTTGGCTCCCAGT---------
+>Illumina_Genomici_DNA_Adapters1_1
+GAT--CGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_303_427
+--TTGCGACAGAG---TTTTGC--TCTTGTCC---
+>Illumina_Genomic_DNA_Adapters1_2
+-----ACA--------CTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+TTGCGACAGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+-------TTGCGAC-----AGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGA---------GCTCT--TCCGATCT
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC-----
+>Illumina_Genomic_DNA_sequencing_primer
+-----ACA--------CTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+TTGCGACAGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------------
+>FC12044_91407_8_200_303_427
+--------------TT--GC--GA---CAGAGTTTTGCTCTTGTCC
+>Illumina_Paired_End_DNA_Adapters1_2
+-----ACA--------CTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+TTGCGACAGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+-------TTGCGAC-----AGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCA----TTCCTGCTGAACCGCTCTTCC
+GATCT
+>FC12044_91407_8_200_303_427
+---------------------------TTGCGACAGAGTTT--TGCT------CTTGTCC
+-----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+-----ACA--------CTCTT-TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+TTGCGACAGAGTTTTGCTCTTGTCC----------------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCA----TTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_303_427
+---TTGCGACAGAGTTT--TGCT------CTTGTCC-----
+>Illumina_DpnII_Gex_Adapters1_1
+GAT--CGTCGGACTGTAGAACTCTGAAC-
+>FC12044_91407_8_200_303_427
+--TTGCGACAGAGTTTTG--CTCTTGTCC
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTT----CAGAGTT---CTACAGTCCGAC
+>FC12044_91407_8_200_303_427
+-----TTGCGACAGAGTTTTGCTCTTGTCC---
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGA-------------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTC----TTCTG--CTTG---
+>FC12044_91407_8_200_303_427
+-----TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA-------------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT----CAGAGTT---CTACAGTCCGA
+>FC12044_91407_8_200_303_427
+------------------------TTGCGACAGAGTTTTGCTCTTGTCC--
+>Illumina_DpnII_Gex_sequencing_primer
+---CGACAGGTTCAGAGTT---CTACAGTCCGACGATC
+>FC12044_91407_8_200_303_427
+TTGCGA------CAGAGTTTTGCTCTTGTCC-------
+>Illumina_NlaIII_Gex_Adapters1_1
+-TCGGACTGTAGAACTCTGAAC------
+>FC12044_91407_8_200_303_427
+TTGCGAC---AGAGTTTTGCTCTTGTCC
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTT----CAGAGTT---CTACAGTCCGACATG
+>FC12044_91407_8_200_303_427
+-----TTGCGACAGAGTTTTGCTCTTGTCC------
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGANN-----------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTC----TTCTG--CTTG---
+>FC12044_91407_8_200_303_427
+-----TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA-------------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT----CAGAGTT---CTACAGTCCGA
+>FC12044_91407_8_200_303_427
+------------------------TTGCGACAGAGTTTTGCTCTTGTCC--
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTT----CAGAGTT---CTACAGTCCGACATG
+>FC12044_91407_8_200_303_427
+--------TTGCGACAGAGTTTTGCTCTTGTCC------
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGACGGCATACGA-------------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_Small_RNA_5p_Adapter
+GTT----CAGAGTT---CTACAGTCCGACGATC
+>FC12044_91407_8_200_303_427
+-TTGCGACAGAGTTTTGCTCTTGTCC-------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTC----TTCTG--CTTGT--
+>FC12044_91407_8_200_303_427
+-----TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA-------------------
+>FC12044_91407_8_200_303_427
+---------------TTGCGACAGAGTTTTGCTCTTGTCC
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTT----CAGAGTT---CTACAGTCCGA
+>FC12044_91407_8_200_303_427
+------------------------TTGCGACAGAGTTTTGCTCTTGTCC--
+>Illumina_Small_RNA_sequencing_primer
+---CGACAGGTTCAGAGTT---CTACAGTCCGACGATC
+>FC12044_91407_8_200_303_427
+TTGCGA------CAGAGTTTTGCTCTTGTCC-------
+>Illumina_Genomici_DNA_Adapters1_1
+---GATCGGAAGAGCTC---GTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_31_299
+TCTGCTC----CAGCTCCAAG-ACGCCGCC---------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCT-TTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----TCTGCTCCAGCTCCAAGACGC-CGCC------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----------------------TCTGC------TCCAGCTCCAAGACGC-CGCC------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+------CAAGC----AGAAGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC-------------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCT-TTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----TCTGCTCCAGCTCCAAGACGC-CGCC------
+>Illumina_Paired_End_DNA_Adapters1_1
+---GATCGGAAGAGCGGTTCAGC----AGGAATGCCGAG
+>FC12044_91407_8_200_31_299
+TCTGCTC------------CAGCTCCAAG--ACGCCGCC
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCT-TTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----TCTGCTCCAGCTCCAAGACGC-CGCC------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----------------------TCTGC------TCCAGCTCCAAGACGC-CGCC------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAA-----CCGCTCTTC
+CGATCT
+>FC12044_91407_8_200_31_299
+-----------------------------TCTGC--TCCAGCTCCAAGACGCCGCC----
+------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCT-TTCC--CTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+----TCTGCTCCAGCTCCAAGACGC-CGCC------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAA-----CCGCTCTTCCGATCT
+>FC12044_91407_8_200_31_299
+-----TCTGC--TCCAGCTCCAAGACGCCGCC----------
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC------------------
+>FC12044_91407_8_200_31_299
+-------------------TCTGCTCCAGCTCCAAGACGCCGCC
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-TCC--GAC------
+>FC12044_91407_8_200_31_299
+------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_DpnII_Gex_Adapters2_1
+------CAAGC----AGAAGACGGCATACGA
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC------
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_31_299
+-------------TCTGCTCCAGCTCCAAGACGCCGCC
+>Illumina_DpnII_Gex_PCR_Primer_1
+------CAAGC----AGAAGACGGCATACGA
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA---------
+>FC12044_91407_8_200_31_299
+-------------------------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----
+>FC12044_91407_8_200_31_299
+--------TC----TGCTCCAGCTCCAAGACG--CCGCC
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC------------------
+>FC12044_91407_8_200_31_299
+--------------TCTGCTCCAGCTCCAAGACGCCGCC
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG-TCCGACATG-----
+>FC12044_91407_8_200_31_299
+------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_NlaIII_Gex_Adapters2_1
+------CAAGC----AGAAGACGGCATACGANN
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC--------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG-----------------
+>FC12044_91407_8_200_31_299
+-------------TCTGCTCCAGCTCCAAGACGCCGCC
+>Illumina_NlaIII_Gex_PCR_Primer_1
+------CAAGC----AGAAGACGGCATACGA
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA---------
+>FC12044_91407_8_200_31_299
+-------------------------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAG-TCCGACATG-----
+>FC12044_91407_8_200_31_299
+---------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_Small_RNA_RT_Primer
+------CAAGC----AGAAGACGGCATACGA
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC------
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAG-TCC--GACGATC----
+>FC12044_91407_8_200_31_299
+--TC----TGCTCCAGCTCCAAGACG--CCGCC
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT-------------------
+>FC12044_91407_8_200_31_299
+-------------TCTGC---TCCAGCTCCAAGACGCCGCC
+>Illumina_Small_RNA_PCR_Primer_1
+------CAAGC----AGAAGACGGCATACGA
+>FC12044_91407_8_200_31_299
+TCTGCTCCAGCTCCAAGACGCCGCC------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA---------
+>FC12044_91407_8_200_31_299
+-------------------------TC----TGCTCCAGCTCCAAGACGCCGCC
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----
+>FC12044_91407_8_200_31_299
+--------TC----TGCTCCAGCTCCAAGACG--CCGCC
+>Illumina_Genomici_DNA_Adapters1_1
+----GATC--------GGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTAC----------------ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+------------TACGGAGCCGCGGGCGGGAAAGGCG------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_553_135
+-----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-----------
+-
+>Illumina_Genomic_DNA_PCR_Primers1_2
+---CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTAC----------------ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+------------TACGGAGCCGCGGGCGGGAAAGGCG------------
+>Illumina_Paired_End_DNA_Adapters1_1
+GAT-CGGAAGAGCGGTTCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_553_135
+--TACGGAGCCGCGG----GCGGGAAAGGCG--
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTAC----------------ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+------------TACGGAGCCGCGGGCGGGAAAGGCG------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC
+T
+>FC12044_91407_8_200_553_135
+-----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-----------
+-
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGC-TGAACCGCTCTTCCGAT
+CT
+>FC12044_91407_8_200_553_135
+----------------TACG-GA---GCCGCGG-------GCGGGAAAGGCG--------
+--
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTAC----------------ACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+------------TACGGAGCCGCGGGCGGGAAAGGCG------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+----------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGG--GCGG----------GAAAGGCG----------
+>Illumina_DpnII_Gex_Adapters1_1
+----GATCGTCGGACTGTAGAACTCTGAAC----
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGG---------GAAAGGCG
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTAC--AGTCCGAC--------------
+>FC12044_91407_8_200_553_135
+---------------TACGGAG-CCG-CGGGCGGGAAAGGCG
+>Illumina_DpnII_Gex_Adapters2_1
+----------CAAGCAG--AAGACGGCATACGA
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------
+>Illumina_DpnII_Gex_Adapters2_2
+-TCGTATGCCGTCTTCTGCTTG-----------
+>FC12044_91407_8_200_553_135
+TACGGA-GCC-------GCGGGCGGGAAAGGCG
+>Illumina_DpnII_Gex_PCR_Primer_1
+----------CAAGCAG--AAGACGGCATACGA
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_553_135
+-----TACGGAG-CCGCGGGCGGG-----------AAAGGCG--
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTAC--AGTCCGACGATC----------
+>FC12044_91407_8_200_553_135
+-----------------TACGGAG-CCG-CGGGCGGGAAAGGCG
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC-----------------
+>FC12044_91407_8_200_553_135
+--------TA-----CGGAGCCGCGGGCGGGAAAGGCG
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTAC--AGTCC--------GACATG--
+>FC12044_91407_8_200_553_135
+---------------TACGGAG-CCGCGGGCGGGAAAGGCG
+>Illumina_NlaIII_Gex_Adapters2_1
+----------CAAGCAG--AAGACGGCATACGANN
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG----------
+>Illumina_NlaIII_Gex_Adapters2_2
+-TCGTATGCCGTCTTCTGCTTG-----------
+>FC12044_91407_8_200_553_135
+TACGGA-GCC-------GCGGGCGGGAAAGGCG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+----------CAAGCAG--AAGACGGCATACGA
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_553_135
+-----TACGGAG-CCGCGGGCGGG-----------AAAGGCG--
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTAC--AGTCC--------GACATG--
+>FC12044_91407_8_200_553_135
+------------------TACGGAG-CCGCGGGCGGGAAAGGCG
+>Illumina_Small_RNA_RT_Primer
+----------CAAGCAG--AAGACGGCATACGA
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTAC--AGTCCGACGATC----------
+>FC12044_91407_8_200_553_135
+-----------TACGGAG-CCG-CGGGCGGGAAAGGCG
+>Illumina_Small_RNA_3p_Adapter
+----------------------TCGTATGCCGTCTTCTGCTTGT
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG-------------------
+>Illumina_Small_RNA_PCR_Primer_1
+----------CAAGCAG--AAGACGGCATACGA
+>FC12044_91407_8_200_553_135
+TACGGAGCCGCGGGCGGGAAAGGCG--------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_553_135
+-----TACGGAG-CCGCGGGCGGG-----------AAAGGCG--
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTAC--AGTCCGACGATC----------
+>FC12044_91407_8_200_553_135
+-----------------TACGGAG-CCG-CGGGCGGGAAAGGCG
+>Illumina_Genomici_DNA_Adapters1_1
+--------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTC--AAGCGAT--TATCCT------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCT-ACACGACGCTCTTC---CGAT----CT
+>FC12044_91407_8_200_139_74
+----------CCTCCCAGG------TTCAAGCGATTATCCT
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_139_74
+-------------CCTCCCAGGTTCAAGCGATTATCCT--------------------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTC-----TTC---CGAT----CT
+>FC12044_91407_8_200_139_74
+---------------------CCTCCCAGGTTCAAGCGATTATCCT
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCT-ACACGACGCTCTTC---CGAT----CT
+>FC12044_91407_8_200_139_74
+----------CCTCCCAGG------TTCAAGCGATTATCCT
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGC------GGTTCAGCAGGAATGCCGAG------
+>FC12044_91407_8_200_139_74
+-----------CCTCCCAGGTTCA--AG------CGATTATCCT
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCT-ACACGACGCTCTTC---CGAT----CT
+>FC12044_91407_8_200_139_74
+----------CCTCCCAGG------TTCAAGCGATTATCCT
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_139_74
+-------------CCTCCCAGGTTCAAGCGATTATCCT--------------------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCT-----GCTGAACCGCTCTTC
+CGATCT
+>FC12044_91407_8_200_139_74
+-------------------------------------CCTCCCAGGTTCAAGCGATTATC
+CT----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCT-ACACGACGCTCTTC---CGAT----CT
+>FC12044_91407_8_200_139_74
+----------CCTCCCAGG------TTCAAGCGATTATCCT
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCT-----GCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_139_74
+-------------CCTCCCAGGTTCAAGCGATTATCCT----
+>Illumina_DpnII_Gex_Adapters1_1
+----------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAGCGATTATC---CT--------------
+>Illumina_DpnII_Gex_Adapters1_2
+----ACAGGTTCAGAG------TTCTACAGTCCGAC
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCA-AGCGATTATCCT----------
+>Illumina_DpnII_Gex_Adapters2_1
+-----------CAAGCAGAAGACGGCATACGA-------
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTC--------------TTCTGCTTG
+>FC12044_91407_8_200_139_74
+--------CCTCCCAGGTTCAAGCGATTATCCT--
+>Illumina_DpnII_Gex_PCR_Primer_1
+-----------CAAGCAGAAGACGGCATACGA-------
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA-------
+>FC12044_91407_8_200_139_74
+-------------CCTCC--CAGGTTCA-AG----------CGATTATCCT
+>Illumina_DpnII_Gex_sequencing_primer
+----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--
+>FC12044_91407_8_200_139_74
+CCTCC--CAGGTTCA-AG----------CGATTATCCT
+>Illumina_NlaIII_Gex_Adapters1_1
+---------------------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAGCGATTATC---CT--------------
+>Illumina_NlaIII_Gex_Adapters1_2
+----ACAGGTTCAGAG------TTCTACAGTCCGACATG
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCA-AGCGATTATCCT-------------
+>Illumina_NlaIII_Gex_Adapters2_1
+-----------CAAGCAGAAGACGGCATACGANN-----
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTC--------------TTCTGCTTG
+>FC12044_91407_8_200_139_74
+--------CCTCCCAGGTTCAAGCGATTATCCT--
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-----------CAAGCAGAAGACGGCATACGA-------
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA-------
+>FC12044_91407_8_200_139_74
+-------------CCTCC--CAGGTTCA-AG----------CGATTATCCT
+>Illumina_NlaIII_Gex_sequencing_primer
+---CCGACAGGTTCAGAG------TTCTACAGTCCGACATG
+>FC12044_91407_8_200_139_74
+CCTCC--CAGGTTCA-AGCGATTATCCT-------------
+>Illumina_Small_RNA_RT_Primer
+-----------CAAGCAGAAGACGGCATACGA-------
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_Small_RNA_5p_Adapter
+--------GTTCAGAGTTCTACAGTCCGACGATC--
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCA-AG----------CGATTATCCT
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTC--------------TTCTGCTTGT
+>FC12044_91407_8_200_139_74
+--------CCTCCCAGGTTCAAGCGATTATCCT---
+>Illumina_Small_RNA_PCR_Primer_1
+-----------CAAGCAGAAGACGGCATACGA-------
+>FC12044_91407_8_200_139_74
+CCTCCCAGGTTCAAG--------------CGATTATCCT
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA-------
+>FC12044_91407_8_200_139_74
+-------------CCTCC--CAGGTTCA-AG----------CGATTATCCT
+>Illumina_Small_RNA_sequencing_primer
+----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--
+>FC12044_91407_8_200_139_74
+CCTCC--CAGGTTCA-AG----------CGATTATCCT
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGT-ATGCCGTCTTCTGCTTG-------
+>FC12044_91407_8_200_108_33
+--------------GTCATGGCGGC--CCGCGCGGGGAGCG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTT------CCGATCT-------
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACC---------ACCGAGATCTACACTCTTTCCCTACACGACGCTCTT
+CCGATCT
+>FC12044_91407_8_200_108_33
+---GTCATGGCGGCCCGCGCGGGGAGCG--------------------------------
+-------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAG--AAGACGGCATAC-----GAGCTCTTCCGATCT
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG----------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTT------CCGATCT-------
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Paired_End_DNA_Adapters1_1
+-------------GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_108_33
+GTCATGGCGGCCCGCGCGG-GGAGCG-------------------
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTT------CCGATCT-------
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACC---------ACCGAGATCTACACTCTTTCCCTACACGACGCTCTT
+CCGATCT
+>FC12044_91407_8_200_108_33
+---GTCATGGCGGCCCGCGCGGGGAGCG--------------------------------
+-------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGC---TGAACCGCTCTTCCG
+ATCT
+>FC12044_91407_8_200_108_33
+------------GTCAT--------GG---CGG----CCCGCGCGGGGAGCG--------
+----
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTT------CCGATCT-------
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGC---TGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_108_33
+--GTCATGGC-GGCCCGCGCGGGGAGCG------------
+>Illumina_DpnII_Gex_Adapters1_1
+--------------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_108_33
+GTCATGGCGGCCCGCGCGGGGAGCG---------------------
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTC----CGAC--------------
+>FC12044_91407_8_200_108_33
+-------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAG--AAGACGGCATACGA--------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_DpnII_Gex_Adapters2_2
+TCGT-ATGCCGTCTTCTGCTTG-------
+>FC12044_91407_8_200_108_33
+--GTCATGGCGGC--CCGCGCGGGGAGCG
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAG--AAGACGGCATACGA--------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_108_33
+---GTCATGGCGGCCCGCG-CGGG----GAG----------CG-
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTC-------------CGACGATC-
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_NlaIII_Gex_Adapters1_1
+----------------------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_108_33
+GTCATGGCGGCCCGCGCGGGGAGCG------------------
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGACATG-------------------
+>FC12044_91407_8_200_108_33
+-----------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAG--AAGACGGCATACGANN------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGT-ATGCCGTCTTCTGCTTG-------
+>FC12044_91407_8_200_108_33
+--GTCATGGCGGC--CCGCGCGGGGAGCG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAG--AAGACGGCATACGA--------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_108_33
+---GTCATGGCGGCCCGCG-CGGG----GAG----------CG-
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAGTCCGACATG-------------------
+>FC12044_91407_8_200_108_33
+--------------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Small_RNA_RT_Primer
+CAAGCAG--AAGACGGCATACGA--------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGTC-------------CGACGATC-
+>FC12044_91407_8_200_108_33
+---------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Small_RNA_3p_Adapter
+TCGT-ATGCCGTCTTCTGCTTGT------
+>FC12044_91407_8_200_108_33
+--GTCATGGCGGC--CCGCGCGGGGAGCG
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAG--AAGACGGCATACGA--------
+>FC12044_91407_8_200_108_33
+------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_108_33
+---GTCATGGCGGCCCGCG-CGGG----GAG----------CG-
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTC-------------CGACGATC-
+>FC12044_91407_8_200_108_33
+---------------------GTCATGGCGGCCCGCGCGGGGAGCG
+>Illumina_Genomici_DNA_Adapters1_1
+-------GATC----GGAAGAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAG-TCG------------------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGA-----CGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTA-AAGAAGAGTCG------------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+-------------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGC
+TCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG-----------------------------------
+-----------
+>Illumina_Genomic_DNA_PCR_Primers1_2
+------------CAAGCAGAAGA--CGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG---------------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGA-----CGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTA-AAGAAGAGTCG------------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAG-CGGTTCAGCAGGAATGCCGAG---
+>FC12044_91407_8_200_980_965
+-------ACAGTGGGTTCTTAAAGAA----GAGTCG
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGA-----CGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTA-AAGAAGAGTCG------------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+-------------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGC
+TCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG-----------------------------------
+-----------
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+------------CAAGCAGAAGA--CGGCATACGAGATCGGTCTCGGCATTCCTGCTGAA
+CCGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG---------------------------------
+---------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGA-----CGCTCTTCCGATCT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTA-AAGAAGAGTCG------------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-------------
+>FC12044_91407_8_200_980_965
+---------------------ACAG----TGGGTTCTTAAAGAAGAGTCG
+>Illumina_DpnII_Gex_Adapters1_1
+-------------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGA--GTCG------------------
+>Illumina_DpnII_Gex_Adapters1_2
+ACA---GGTTC----AGAGTTCTACAGTCCGAC
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGA-----AGAGTCG---
+>Illumina_DpnII_Gex_Adapters2_1
+------------CAAGCAGAAGA--CGGCATACGA
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG--------
+>Illumina_DpnII_Gex_Adapters2_2
+----------------------TCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG------------------
+>Illumina_DpnII_Gex_PCR_Primer_1
+------------CAAGCAGAAGA--CGGCATACGA
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG--------
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACA---GGTTC----AGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_980_965
+-------------------ACAGTGGGTTCTTAAAGA-----AGAGTCG--
+>Illumina_DpnII_Gex_sequencing_primer
+CGACA---GGTTC----AGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_980_965
+--ACAGTGGGTTCTTAAAGA-----AGAGTCG-------
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC---------
+>FC12044_91407_8_200_980_965
+----ACAGT-GGGTTCTTAAAGAAGAGTCG
+>Illumina_NlaIII_Gex_Adapters1_2
+ACA---GGTTC----AGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGA-----AGAGTCG------
+>Illumina_NlaIII_Gex_Adapters2_1
+------------CAAGCAGAAGA--CGGCATACGANN
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG----------
+>Illumina_NlaIII_Gex_Adapters2_2
+----------------------TCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG------------------
+>Illumina_NlaIII_Gex_PCR_Primer_1
+------------CAAGCAGAAGA--CGGCATACGA
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG--------
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACA---GGTTC----AGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_980_965
+-------------------ACAGTGGGTTCTTAAAGA-----AGAGTCG--
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACA---GGTTC----AGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_980_965
+---ACAGTGGGTTCTTAAAGA-----AGAGTCG------
+>Illumina_Small_RNA_RT_Primer
+------------CAAGCAGAAGA--CGGCATACGA
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG--------
+>Illumina_Small_RNA_5p_Adapter
+---GTTCAGAGTTCT------ACAGTCCGACGATC
+>FC12044_91407_8_200_980_965
+ACAGT---GGGTTCTTAAAGAAGAGTCG-------
+>Illumina_Small_RNA_3p_Adapter
+----------------------TCGTATGCCGTCTTCTGCTTGT
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAAAGAAGAGTCG-------------------
+>Illumina_Small_RNA_PCR_Primer_1
+------------CAAGCAGAAGA--CGGCATACGA
+>FC12044_91407_8_200_980_965
+ACAGTGGGTTCTTAA--AGAAGAGTCG--------
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACA---GGTTC----AGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_980_965
+-------------------ACAGTGGGTTCTTAAAGA-----AGAGTCG--
+>Illumina_Small_RNA_sequencing_primer
+CGACA---GGTTC----AGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_980_965
+--ACAGTGGGTTCTTAAAGA-----AGAGTCG-------
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGC-CGTCTTCTGCTTG-
+>FC12044_91407_8_200_981_857
+-AACG--AGGG-------GCGCGACTTGACCTTGG
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+--------------AACGAGGGGCGCGACTT--GACCTTGG
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGA----CGC-TCTTCCGA
+TCT---
+>FC12044_91407_8_200_981_857
+---------------------------------------AACGAGGGGCGCGACTT--GA
+CCTTGG
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAA-GACGGCATACGAGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+-------AACGAGGG-----GCGCGACTT--GACCTTGG
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+--------------AACGAGGGGCGCGACTT--GACCTTGG
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG-------------------
+>FC12044_91407_8_200_981_857
+-----------------------AA---CGAGGGGCGCGACTTGACCTTGG
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+--------------AACGAGGGGCGCGACTT--GACCTTGG
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGA----CGC-TCTTCCGA
+TCT---
+>FC12044_91407_8_200_981_857
+---------------------------------------AACGAGGGGCGCGACTT--GA
+CCTTGG
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATT--CCTGCTGAACCGCTCTTCCGA
+TCT
+>FC12044_91407_8_200_981_857
+----------------AACGAG---GGGCGCGAC-TTGACCT--TGG-------------
+---
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+--------------AACGAGGGGCGCGACTT--GACCTTGG
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAAC------CGC-TCTTCCGATCT---
+>FC12044_91407_8_200_981_857
+--------------------AACGAGGGGCGCGACTT--GACCTTGG
+>Illumina_DpnII_Gex_Adapters1_1
+---GATCGTCG-GACTGTAGAACTCTGAAC----
+>FC12044_91407_8_200_981_857
+AACGAGGGGCGCGACT---------TGACCTTGG
+>Illumina_DpnII_Gex_Adapters1_2
+-AC-AGGTTC-AGAGTTCTACAGTCCGAC-----
+>FC12044_91407_8_200_981_857
+AACGAGGGGCGCGACTT---------GACCTTGG
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGA--------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_DpnII_Gex_Adapters2_2
+--------TCGTATGCCGTCTTCTGCTTG-
+>FC12044_91407_8_200_981_857
+AACGAGGGGCG-----CGACTTGACCTTGG
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGAC-------AGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_981_857
+AACGA-GGGGCG-----CGACTTGACCTTGG--------------------
+>Illumina_DpnII_Gex_sequencing_primer
+--CGACAGGTTCAGAGTTCTACAGTCCGACGATC----
+>FC12044_91407_8_200_981_857
+AACGAGGGGCGC-GACTT------------GACCTTGG
+>Illumina_NlaIII_Gex_Adapters1_1
+--------TCG-GACTGTAGAACTCTGAAC----
+>FC12044_91407_8_200_981_857
+AACGAGGGGCGCGACT---------TGACCTTGG
+>Illumina_NlaIII_Gex_Adapters1_2
+-AC-AGGTTCAGAGTTCTACAGTC-CGACATG-------
+>FC12044_91407_8_200_981_857
+AACGAGG--------------GGCGCGACTTGACCTTGG
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGANN------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_NlaIII_Gex_Adapters2_2
+--------TCGTATGCCGTCTTCTGCTTG-
+>FC12044_91407_8_200_981_857
+AACGAGGGGCG-----CGACTTGACCTTGG
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGAC-------AGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_981_857
+AACGA-GGGGCG-----CGACTTGACCTTGG--------------------
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGAC-AGGTTCAGAGTTCTACAGTC-CGACATG-------
+>FC12044_91407_8_200_981_857
+--AACGAGG--------------GGCGCGACTTGACCTTGG
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGACGGCATACGA--------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACA-------GTCCGAC--GATC----
+>FC12044_91407_8_200_981_857
+--------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_Small_RNA_3p_Adapter
+--------TCGTATGCCGTCTTCTGCTTGT
+>FC12044_91407_8_200_981_857
+AACGAGGGGCG-----CGACTTGACCTTGG
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------------
+>FC12044_91407_8_200_981_857
+----------------AACGAGGGGCGCGACTTGACCTTGG
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGAC-------AGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_981_857
+AACGA-GGGGCG-----CGACTTGACCTTGG--------------------
+>Illumina_Small_RNA_sequencing_primer
+--CGACAGGTTCAGAGTTCTACAGTCCGACGATC----
+>FC12044_91407_8_200_981_857
+AACGAGGGGCGC-GACTT------------GACCTTGG
+>Illumina_Genomici_DNA_Adapters1_1
+-------------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG---
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGA-------AGC-----------------CTTGGAC
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTA---CACGACGCTCTT---CCGATCT
+>FC12044_91407_8_200_8_865
+------TTTCCC-ACCCCAGGAAGC-CTTGGAC------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA---CACGACGCTCTT---CCG
+ATCT
+>FC12044_91407_8_200_8_865
+-------------------------------TTTCCC-ACCCCAGGAAGC-CTTGGAC--
+----
+>Illumina_Genomic_DNA_PCR_Primers1_2
+---------CAAGCAGAAGAC--GGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC---------------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTA---CACGACGCTCTT---CCGATCT
+>FC12044_91407_8_200_8_865
+------TTTCCC-ACCCCAGGAAGC-CTTGGAC------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTT-----CAGCAGGAATGCCGAG---
+>FC12044_91407_8_200_8_865
+--------------TTTCCCACCCCAGGAA-GCCTTGGAC
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTA---CACGACGCTCTT---CCGATCT
+>FC12044_91407_8_200_8_865
+------TTTCCC-ACCCCAGGAAGC-CTTGGAC------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA---CACGACGCTCTT---CCG
+ATCT
+>FC12044_91407_8_200_8_865
+-------------------------------TTTCCC-ACCCCAGGAAGC-CTTGGAC--
+----
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+---------CAAGCAGAAGAC--GGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG
+CTCTTCCGATCT
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC------------------------------
+------------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTA---CACGACGCTCTT---CCGATCT
+>FC12044_91407_8_200_8_865
+------TTTCCC-ACCCCAGGAAGC-CTTGGAC------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTC--------GGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_8_865
+---TTTCCCACCCCAGG-AAGCCT--TGGAC--------------
+>Illumina_DpnII_Gex_Adapters1_1
+--------------GATCGTCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGCCTTGGAC---------------
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAGTCCGAC-----------------
+>FC12044_91407_8_200_8_865
+------------TT------TCCCACCCCAGGAAGCCTTGGAC
+>Illumina_DpnII_Gex_Adapters2_1
+---------CAAGCAGAAGAC--GGCATACGA
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC--
+>Illumina_DpnII_Gex_Adapters2_2
+--TC--------GTATGCCGTCTTCTGCTTG---
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGC---------CTTGGAC
+>Illumina_DpnII_Gex_PCR_Primer_1
+---------CAAGCAGAAGAC--GGCATACGA
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC--
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_8_865
+----TTTC-----CCACC-CCAGG--AAGCCTTGGAC-------
+>Illumina_DpnII_Gex_sequencing_primer
+-------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGG--AAGCCTTGGAC------------
+>Illumina_NlaIII_Gex_Adapters1_1
+-------------------TCGGACTGTAGAACTCTGAAC
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGCCTTGGAC---------------
+>Illumina_NlaIII_Gex_Adapters1_2
+---------ACAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGG--AAGCCTTGGAC-----------
+>Illumina_NlaIII_Gex_Adapters2_1
+---------CAAGCAGAAGAC--GGCATACGANN
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC----
+>Illumina_NlaIII_Gex_Adapters2_2
+--TC--------GTATGCCGTCTTCTGCTTG---
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGC---------CTTGGAC
+>Illumina_NlaIII_Gex_PCR_Primer_1
+---------CAAGCAGAAGAC--GGCATACGA
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC--
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_8_865
+----TTTC-----CCACC-CCAGG--AAGCCTTGGAC-------
+>Illumina_NlaIII_Gex_sequencing_primer
+---CCGA---CAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGG--AAGCCTTGGAC-----------
+>Illumina_Small_RNA_RT_Primer
+---------CAAGCAGAAGAC--GGCATACGA
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC--
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGTCCGACGATC----------------
+>FC12044_91407_8_200_8_865
+--------TT------TCCCAC---CCCAGGAAGCCTTGGAC
+>Illumina_Small_RNA_3p_Adapter
+--TC--------GTATGCCGTCTTCTGCTTGT--
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGGAAGC---------CTTGGAC
+>Illumina_Small_RNA_PCR_Primer_1
+---------CAAGCAGAAGAC--GGCATACGA
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAG--GAAGCCTTGG---AC--
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_8_865
+----TTTC-----CCACC-CCAGG--AAGCCTTGGAC-------
+>Illumina_Small_RNA_sequencing_primer
+-------CGACAGGTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_8_865
+TTTCCCACCCCAGG--AAGCCTTGGAC------------
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGC--TCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_292_484
+--TC-----AGCCTCCG--TGCCCAGCCCACTCC---
+>Illumina_Genomic_DNA_Adapters1_2
+--ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+----------------------TC-AGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Genomic_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT--
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCA-CTCC
+>Illumina_Genomic_DNA_sequencing_primer
+--ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------
+>FC12044_91407_8_200_292_484
+---------------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_Paired_End_DNA_Adapters1_2
+--ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+----------------------TC-AGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC
+T
+>FC12044_91407_8_200_292_484
+-----------------------------TCAGCCTCCGTGCCCAGCC-CACTCC-----
+-
+>Illumina_Paired_End_DNA_sequencing_primer_1
+--ACACTCTTTCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCAC-----TCC-----
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT
+>FC12044_91407_8_200_292_484
+-----TCAGCCTCCGTGCCCAGCC-CACTCC------
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACT--GT----AG--AACTCTGAAC
+>FC12044_91407_8_200_292_484
+-----TCAGCCTCCGTGCCCAGCCCACTCC----
+>Illumina_DpnII_Gex_Adapters1_2
+ACAGGTTCAG----AGTTCTACAGTCCGAC---
+>FC12044_91407_8_200_292_484
+------TCAGCCTCCGTGC-CCAG-CCCACTCC
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGA--------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_DpnII_Gex_Adapters2_2
+-------TCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_292_484
+TCAGCCTCCG--TGCCCAGCCCACTCC---
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAG----AGTTCTACAG-----TCCGA
+>FC12044_91407_8_200_292_484
+-------------------------TCAGCCTCCGTGC-CCAGCCCACTCC--
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAG----AGTTCTACAGTCCGACGATC-
+>FC12044_91407_8_200_292_484
+--------TCAGCCTCCGTGC-CCAG-CCCAC--TCC
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACT--GT----AG--AACTCTGAAC
+>FC12044_91407_8_200_292_484
+TCAGCCTCCGTGCCCAGCCCACTCC----
+>Illumina_NlaIII_Gex_Adapters1_2
+ACAGGTTCAGAGTTCTACAG--TCCGACATG-------------
+>FC12044_91407_8_200_292_484
+----------------TCAGCCTCCG---TGCCCAGCCCACTCC
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGANN------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_NlaIII_Gex_Adapters2_2
+-------TCGTATGCC--GTCTTCTGCTTG
+>FC12044_91407_8_200_292_484
+TCAGCCTCCG--TGCCCAGCCCACTCC---
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAG----AGTTCTACAG-----TCCGA
+>FC12044_91407_8_200_292_484
+-------------------------TCAGCCTCCGTGC-CCAGCCCACTCC--
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAG--TCCGACATG-------------
+>FC12044_91407_8_200_292_484
+-------------------TCAGCCTCCG---TGCCCAGCCCACTCC
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGACGGCATACGA--------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_Small_RNA_5p_Adapter
+GTTCAG----AGTTCTACAGTCCGACGATC-
+>FC12044_91407_8_200_292_484
+--TCAGCCTCCGTGC-CCAG-CCCAC--TCC
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTT--GT--------------
+>FC12044_91407_8_200_292_484
+-------------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA--------------
+>FC12044_91407_8_200_292_484
+----------TCAGCCTCCGTGCCCAGCCCACTCC
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAG----AGTTCTACAG-----TCCGA
+>FC12044_91407_8_200_292_484
+-------------------------TCAGCCTCCGTGC-CCAGCCCACTCC--
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAG----AGTTCTACAGTCCGACGATC-
+>FC12044_91407_8_200_292_484
+--------TCAGCCTCCGTGC-CCAG-CCCAC--TCC
+>Illumina_Genomici_DNA_Adapters1_1
+GATCGGAAGAGCTCGTATGCCG------TCTTCTGCTTG
+>FC12044_91407_8_200_675_16
+-CTCGGGAG-GCT--GAGGCAGGGGGGTT----------
+>Illumina_Genomic_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT-----------------------
+>FC12044_91407_8_200_675_16
+-------------------------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT--
+---------------------
+>FC12044_91407_8_200_675_16
+--------------------------------------------------------CTCG
+GGAGGCTGAGGCAGGGGGGTT
+>Illumina_Genomic_DNA_PCR_Primers1_2
+-----CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----------
+>Illumina_Genomic_DNA_sequencing_primer
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT-----------------------
+>FC12044_91407_8_200_675_16
+-------------------------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_Paired_End_DNA_Adapters1_1
+-----------GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA--GGCAGGGGGGTT----------------
+>Illumina_Paired_End_DNA_Adapters1_2
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT-----------------------
+>FC12044_91407_8_200_675_16
+-------------------------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT--
+---------------------
+>FC12044_91407_8_200_675_16
+--------------------------------------------------------CTCG
+GGAGGCTGAGGCAGGGGGGTT
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACC------GCTCTT
+CCGATCT
+>FC12044_91407_8_200_675_16
+----------------------------CTCGGGA----GGCTGAGGCAGGGGGGTT---
+-------
+>Illumina_Paired_End_DNA_sequencing_primer_1
+ACACTCTTTCCCTACACGACGCTCTTCCGATCT-----------------------
+>FC12044_91407_8_200_675_16
+-------------------------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCCTGCTGAACC------GCTCTTCCGATCT
+>FC12044_91407_8_200_675_16
+----CTCGGGA----GGCTGAGGCAGGGGGGTT----------
+>Illumina_DpnII_Gex_Adapters1_1
+GATCGTCGGACTGTAGAACTCTGAAC-----------------
+>FC12044_91407_8_200_675_16
+------------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_DpnII_Gex_Adapters1_2
+--------------ACAGGTTCAGAGTTCTACAGTCCGAC
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGG---GGGGTT------------
+>Illumina_DpnII_Gex_Adapters2_1
+-----CAAGCAGAAGACGGCA-------TACGA
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----
+>Illumina_DpnII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG---------------------
+>FC12044_91407_8_200_675_16
+-----------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_DpnII_Gex_PCR_Primer_1
+-----CAAGCAGAAGACGGCA-------TACGA
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_675_16
+-------CTCGGGAGGCTGA-----GGCAGG---GGGGTT-----------
+>Illumina_DpnII_Gex_sequencing_primer
+--CGACAGGTTCA-------GAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGGGGGGTT----------------
+>Illumina_NlaIII_Gex_Adapters1_1
+TCGGACTGTAGAACTCTGAAC-----------------
+>FC12044_91407_8_200_675_16
+-------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_NlaIII_Gex_Adapters1_2
+--------------ACAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGG---GGGGTT---------------
+>Illumina_NlaIII_Gex_Adapters2_1
+-----CAAGCAGAAGACGGCA-------TACGANN
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT------
+>Illumina_NlaIII_Gex_Adapters2_2
+TCGTATGCCGTCTTCTGCTTG---------------------
+>FC12044_91407_8_200_675_16
+-----------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_NlaIII_Gex_PCR_Primer_1
+-----CAAGCAGAAGACGGCA-------TACGA
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_675_16
+-------CTCGGGAGGCTGA-----GGCAGG---GGGGTT-----------
+>Illumina_NlaIII_Gex_sequencing_primer
+---------CCGA--CAGGTTCAGAGTTCTACAGTCCGACATG
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGG---GGGGTT---------------
+>Illumina_Small_RNA_RT_Primer
+-----CAAGCAGAAGACGGCA-------TACGA
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----
+>Illumina_Small_RNA_5p_Adapter
+----------------------GTTCAGAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGGGGGGTT-----------------------
+>Illumina_Small_RNA_3p_Adapter
+TCGTATGCCGTCTTCTGCTTGT--------------------
+>FC12044_91407_8_200_675_16
+-----------------CTCGGGAGGCTGAGGCAGGGGGGTT
+>Illumina_Small_RNA_PCR_Primer_1
+-----CAAGCAGAAGACGGCA-------TACGA
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGA----GGCAGGGGGGTT----
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCGA
+>FC12044_91407_8_200_675_16
+-------CTCGGGAGGCTGA-----GGCAGG---GGGGTT-----------
+>Illumina_Small_RNA_sequencing_primer
+--CGACAGGTTCA-------GAGTTCTACAGTCCGACGATC
+>FC12044_91407_8_200_675_16
+CTCGGGAGGCTGAGGCAGGGGGGTT----------------
+>Illumina_Genomici_DNA_Adapters1_1
+---GATC-GGAA---GAGCTCGTATGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAGCTC-----CCCT----------
+>Illumina_Genomic_DNA_Adapters1_2
+--ACACTCTT----------TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+CCA-AATCTTGAATTGTAGCTCCC---------CT----------
+>Illumina_Genomic_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACGACGCTCTTCC
+GATCT
+>FC12044_91407_8_200_285_136
+-----------------CCAAATCTTGAATTGTAGCTC---CCCT---------------
+-----
+>Illumina_Genomic_DNA_PCR_Primers1_2
+-CAAGCA----GAAGACGGCATACGAGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+CCAA--ATCTTGA-------ATTGTAGCTC--CC---CT
+>Illumina_Genomic_DNA_sequencing_primer
+--ACACTCTT----------TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+CCA-AATCTTGAATTGTAGCTCCC---------CT----------
+>Illumina_Paired_End_DNA_Adapters1_1
+GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------------------
+>FC12044_91407_8_200_285_136
+---------------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_Paired_End_DNA_Adapters1_2
+--ACACTCTT----------TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+CCA-AATCTTGAATTGTAGCTCCC---------CT----------
+>Illumina_Paired_End_DNA_PCR_Primers1_1
+AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACGACGCTCTTCC
+GATCT
+>FC12044_91407_8_200_285_136
+-----------------CCAAATCTTGAATTGTAGCTC---CCCT---------------
+-----
+>Illumina_Paired_End_DNA_PCR_Primers1_2
+CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC
+T
+>FC12044_91407_8_200_285_136
+------------------CCAAATC-----TTGAATTGTAGCT---CCCCT---------
+-
+>Illumina_Paired_End_DNA_sequencing_primer_1
+--ACACTCTT----------TCCCTACACGACGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+CCA-AATCTTGAATTGTAGCTCCC---------CT----------
+>Illumina_Paired_End_DNA_sequencing_primer_2
+CGGTCTCGGCATTCC---TGCTGAA--------CCGCTCTTCCGATCT
+>FC12044_91407_8_200_285_136
+-------------CCAAATCTTGAATTGTAGCTCCCCT----------
+>Illumina_DpnII_Gex_Adapters1_1
+---GATCGTCGGACTGTAGAACT---CTGAAC
+>FC12044_91407_8_200_285_136
+CCAAATC-TTGAATTGTAG--CTCCCCT----
+>Illumina_DpnII_Gex_Adapters1_2
+--ACAGGTTCAGAGTTCTACAG-TCCGAC--
+>FC12044_91407_8_200_285_136
+CCAAATCTT--GAATTGT--AGCTCC--CCT
+>Illumina_DpnII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGA----------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_DpnII_Gex_Adapters2_2
+------------TCGTA--TGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAGCTCCCCT----------
+>Illumina_DpnII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA----------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_DpnII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-
+>FC12044_91407_8_200_285_136
+-----------------CCAAATCTT--GAATTGT--AGCTCCCCT
+>Illumina_DpnII_Gex_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC----
+>FC12044_91407_8_200_285_136
+CCAAATCTT--GAATTGTA---------GCTCCCCT
+>Illumina_NlaIII_Gex_Adapters1_1
+-------TCGGACTGTAGAACT---CTGAAC
+>FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAG--CTCCCCT----
+>Illumina_NlaIII_Gex_Adapters1_2
+--ACAGGTTCAGAGTTCTACAG-TCCGACATG
+>FC12044_91407_8_200_285_136
+CCAAATCTT--GAATTGT--AGCTCC--CCT-
+>Illumina_NlaIII_Gex_Adapters2_1
+CAAGCAGAAGACGGCATACGANN--------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_NlaIII_Gex_Adapters2_2
+------------TCGTA--TGCCGTCTTCTGCTTG
+>FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAGCTCCCCT----------
+>Illumina_NlaIII_Gex_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA----------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_NlaIII_Gex_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-
+>FC12044_91407_8_200_285_136
+-----------------CCAAATCTT--GAATTGT--AGCTCCCCT
+>Illumina_NlaIII_Gex_sequencing_primer
+CCGACAGGTTCAGAGTTCTACAG-TCCGACATG
+>FC12044_91407_8_200_285_136
+-CCAAATCTT--GAATTGT--AGCTCC--CCT-
+>Illumina_Small_RNA_RT_Primer
+CAAGCAGAAGACGGCATACGA----------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_Small_RNA_5p_Adapter
+GTTCAGAGTTCTACAGTCCGACGATC------------------
+>FC12044_91407_8_200_285_136
+-----------------CCAA--ATCTTGAATTGTAGCTCCCCT
+>Illumina_Small_RNA_3p_Adapter
+------------TCGTA--TGCCGTCTTCTGCTTGT
+>FC12044_91407_8_200_285_136
+CCAAATCTTGAATTGTAGCTCCCCT-----------
+>Illumina_Small_RNA_PCR_Primer_1
+CAAGCAGAAGACGGCATACGA----------------------
+>FC12044_91407_8_200_285_136
+------------------CCAAATCTTGAATTGTAGCTCCCCT
+>Illumina_Small_RNA_PCR_Primer_2
+AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-
+>FC12044_91407_8_200_285_136
+-----------------CCAAATCTT--GAATTGT--AGCTCCCCT
+>Illumina_Small_RNA_sequencing_primer
+CGACAGGTTCAGAGTTCTACAGTCCGACGATC----
+>FC12044_91407_8_200_285_136
+CCAAATCTT--GAATTGTA---------GCTCCCCT
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needleall_out.pair
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needleall_out.pair	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,18267 @@
+########################################
+# Program: needleall
+# Rundate: Mon 16 Dec 2024 17:13:24
+# Commandline: needleall
+#    -asequence /tmp/saskia/tmpet25av5g/files/e/e/8/dataset_ee891bb1-6c31-453a-8e30-69544c761887.dat
+#    -bsequence /tmp/saskia/tmpet25av5g/files/0/7/0/dataset_07021fba-c6f2-478f-8665-0e6832dba409.dat
+#    -outfile /tmp/saskia/tmpet25av5g/job_working_directory/000/9/outputs/dataset_b9c62224-ff77-442f-a21f-1e30d4ffb6fc.dat
+#    -gapopen 10.0
+#    -gapextend 0.5
+#    -brief yes
+#    -aformat3 pair
+#    -auto
+#    -datafile EPAM30
+#    -endopen 13.37
+#    -endextend 2.5
+#    -minscore 1.0
+# Align_format: pair
+# Report_file: /tmp/saskia/tmpet25av5g/job_working_directory/000/9/outputs/dataset_b9c62224-ff77-442f-a21f-1e30d4ffb6fc.dat
+########################################
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          16/37 (43.2%)
+# Score: 61.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG----     33
+                     |.|      |||||     ||..|||..| .||    
+FC12044_91407      1 GTT------AGCTC-----CCACCTTAAG-ATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                         .|      |||| ||        |||..|||.|   
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCT     48
+                        |.||  ||..|||||  .||||.|      ||.              
+FC12044_91407      1 ---GTTA--GCTCCCACCTTAAGATGT------TTA--------------     25
+
+Illumina_Geno     49 CTTCCGATCT     58
+                               
+FC12044_91407     26 ----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      11/47 (23.4%)
+# Similarity:    11/47 (23.4%)
+# Gaps:          35/47 (74.5%)
+# Score: 49.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACG--AGCTCTTCCGATCT-----------     34
+                                        |  |||||  || |.||           
+FC12044_91407      1 -------------------GTTAGCTC--CC-ACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                         .|      |||| ||        |||..|||.|   
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          33/45 (73.3%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCC------GAG-------     32
+                                  ||| |||.      ||      .||       
+FC12044_91407      1 -------------GTT-AGCT------CCCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                         .|      |||| ||        |||..|||.|   
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACC--GAGATCTACACTCTTTCCCTACACGACGCT     48
+                        |.||  ||..|||||  .||||.|      ||.              
+FC12044_91407      1 ---GTTA--GCTCCCACCTTAAGATGT------TTA--------------     25
+
+Illumina_Pair     49 CTTCCGATCT     58
+                               
+FC12044_91407     26 ----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 67
+# Identity:      15/67 (22.4%)
+# Similarity:    15/67 (22.4%)
+# Gaps:          48/67 (71.6%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGT---CTCGGCATTCCTGCTGAAC     47
+                                               ||   |||               |
+FC12044_91407      1 --------------------------GTTAGCTC---------------C      9
+
+Illumina_Pair     48 CGCTCTTCCGATCT---     61
+                     |.| |||..|||.|   
+FC12044_91407     10 CAC-CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                         .|      |||| ||        |||..|||.|   
+FC12044_91407      1 GTTAGC------TCCC-AC--------CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          24/43 (55.8%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGT---CTCGGCATTCCTGCTGAACCGCTCTTCCGATCT---     37
+                       ||   |||               ||.| |||..|||.|   
+FC12044_91407      1 --GTTAGCTC---------------CCAC-CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       9/42 (21.4%)
+# Similarity:     9/42 (21.4%)
+# Gaps:          33/42 (78.6%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGAAC----------------     26
+                         ||       |||  |||    |                
+FC12044_91407      1 ----GT-------TAG--CTC----CCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      10/40 (25.0%)
+# Similarity:    10/40 (25.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAG-TCCGAC-------------     26
+                                |||    || |||.||             
+FC12044_91407      1 -----------GTT----AGCTCCCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --------CAAGCAGAAGACGGCATACGA------     21
+                             |   |     ||  |.||.||      
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATG---CCGTCTTCTGCTTG----     21
+                       ||..|   ||..|||..| .||    
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --------CAAGCAGAAGACGGCATACGA------     21
+                             |   |     ||  |.||.||      
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+                        |.||  ||..|||||      ||.||| ||| ||        
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAG-TCCGACGATC------------     32
+                                  |||    || |||.||   |            
+FC12044_91407      1 -------------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       7/37 (18.9%)
+# Similarity:     7/37 (18.9%)
+# Gaps:          28/37 (75.7%)
+# Score: 31.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGAAC----------------     21
+                            ||. |.|||    |                
+FC12044_91407      1 -------GTT-AGCTC----CCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          26/40 (65.0%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAG-TCCGAC------ATG----     29
+                                |||    || |||.||      |||    
+FC12044_91407      1 -----------GTT----AGCTCCCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       9/36 (25.0%)
+# Similarity:     9/36 (25.0%)
+# Gaps:          24/36 (66.7%)
+# Score: 26.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---------CAAGC----AGAAGACGGCATACGANN     23
+                              ||  |    |||.|.    .||     
+FC12044_91407      1 GTTAGCTCCCA--CCTTAAGATGT----TTA-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATG---CCGTCTTCTGCTTG----     21
+                       ||..|   ||..|||..| .||    
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --------CAAGCAGAAGACGGCATACGA------     21
+                             |   |     ||  |.||.||      
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+                        |.||  ||..|||||      ||.||| ||| ||        
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAG-TCCGAC------ATG----     32
+                                   |||    || |||.||      |||    
+FC12044_91407      1 --------------GTT----AGCTCCCACCTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --------CAAGCAGAAGACGGCATACGA------     21
+                             |   |     ||  |.||.||      
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      11/39 (28.2%)
+# Similarity:    11/39 (28.2%)
+# Gaps:          27/39 (69.2%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAG-TCCGACGATC------------     26
+                            |||    || |||.||   |            
+FC12044_91407      1 -------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:           9/28 (32.1%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATG---CCGTCTTCTGCTTGT---     22
+                       ||..|   ||..|||..| .|||   
+FC12044_91407      1 --GTTAGCTCCCACCTTAAG-ATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 30.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --------CAAGCAGAAGACGGCATACGA------     21
+                             |   |     ||  |.||.||      
+FC12044_91407      1 GTTAGCTCC---C-----AC--CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGA-GTTCTACAGTCCGA     44
+                        |.||  ||..|||||      ||.||| ||| ||        
+FC12044_91407      1 ---GTTA--GCTCCCACC------TTAAGATGTT-TA--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_406_24
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAG-TCCGACGATC------------     32
+                                  |||    || |||.||   |            
+FC12044_91407      1 -------------GTT----AGCTCCCAC---CTTAAGATGTTTA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTATG-----CCGT-CTTCTGCTTG     33
+                                ||| |.||     ||.| |.||. ||| 
+FC12044_91407      1 -----------CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+                        ||||.|     |||..| |  |.|.|||       
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 92.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGC     47
+                                     |     |||   .|||.|..|||||        |
+FC12044_91407      1 ----------------C-----TCTGTGGCACCCCATCCCT--------C     21
+
+Illumina_Geno     48 TCTTCCGATCT     58
+                     .|||       
+FC12044_91407     22 ACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          19/39 (48.7%)
+# Score: 61.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT-----     34
+                     |.  |.|.    |||  ||   |.|.|||   ||     
+FC12044_91407      1 CT--CTGT----GGC--AC---CCCATCC---CTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+                        ||||.|     |||..| |  |.|.|||       
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 21.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATG----CCGAG---------     32
+                                |   ||.|      ||    ||.|.         
+FC12044_91407      1 -----------C---TCTG------TGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+                        ||||.|     |||..| |  |.|.|||       
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 92.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCT---ACACTCTTTCCCTACACGACGC     47
+                                     |     |||   .|||.|..|||||        |
+FC12044_91407      1 ----------------C-----TCTGTGGCACCCCATCCCT--------C     21
+
+Illumina_Pair     48 TCTTCCGATCT     58
+                     .|||       
+FC12044_91407     22 ACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      16/64 (25.0%)
+# Similarity:    16/64 (25.0%)
+# Gaps:          42/64 (65.6%)
+# Score: 86.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTC---GGCATTCCTGCTGAAC     47
+                                                 |||   ||||..||..|    |
+FC12044_91407      1 ----------------------------CTCTGTGGCACCCCATC----C     18
+
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+                     |.|.|||       
+FC12044_91407     19 CTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTT-----CCCTACACGACGCTCTTCCGATCT     33
+                        ||||.|     |||..| |  |.|.|||       
+FC12044_91407      1 ---CTCTGTGGCACCCCATC-C--CTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      16/40 (40.0%)
+# Similarity:    16/40 (40.0%)
+# Gaps:          18/40 (45.0%)
+# Score: 86.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTC---GGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                         |||   ||||..||..|    ||.|.|||       
+FC12044_91407      1 ----CTCTGTGGCACCCCATC----CCTCACTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAA--------CTCTGAAC--     26
+                           |  .||||.|.|        |||   ||  
+FC12044_91407      1 ------C--TCTGTGGCACCCCATCCCTC---ACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       8/40 (20.0%)
+# Similarity:     8/40 (20.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGT------CCGAC--------     26
+                                   || |.||      ||..|        
+FC12044_91407      1 --------------CT-CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+                     |.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      14/28 (50.0%)
+# Similarity:    14/28 (50.0%)
+# Gaps:          10/28 (35.7%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -TCGTATG-----CCGT-CTTCTGCTTG     21
+                      || |.||     ||.| |.||. ||| 
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+                     |.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+                            |     ||| |||   .||  |    |||     ||.      
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+
+Illumina_DpnI     43 GA     44
+                       
+FC12044_91407     26 --     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------     32
+                                     || |.||    ||  |.|||        
+FC12044_91407      1 ----------------CT-CTGTGGCACC--CCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAA--------CTCTGAAC--     21
+                      |  .||||.|.|        |||   ||  
+FC12044_91407      1 -C--TCTGTGGCACCCCATCCCTC---ACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          16/35 (45.7%)
+# Score: 44.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACA----GTCC--GACATG     29
+                      |    ||.|.|    .||    .|||  .||.| 
+FC12044_91407      1 -C----TCTGTG----GCACCCCATCCCTCACTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          10/29 (34.5%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCAT-----ACGANN     23
+                     |.  |.|..| ||..|||     ||..  
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      14/28 (50.0%)
+# Similarity:    14/28 (50.0%)
+# Gaps:          10/28 (35.7%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGTATG-----CCGT-CTTCTGCTTG     21
+                      || |.||     ||.| |.||. ||| 
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+                     |.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+                            |     ||| |||   .||  |    |||     ||.      
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+
+Illumina_NlaI     43 GA     44
+                       
+FC12044_91407     26 --     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 46.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----------CCGACAGGTTCAGAGTTCTACAGTCCGACATG     32
+                                ||  ||   ||      |  |  ||  ||.| 
+FC12044_91407      1 CTCTGTGGCACCC--CA---TC------C--C--TC--ACTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+                     |.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      11/38 (28.9%)
+# Similarity:    11/38 (28.9%)
+# Gaps:          25/38 (65.8%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAGT----CCGACGATC--------     26
+                               || |.||    ||  |.|||        
+FC12044_91407      1 ----------CT-CTGTGGCACC--CCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          11/29 (37.9%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -TCGTATG-----CCGT-CTTCTGCTTGT     22
+                      || |.||     ||.| |.||. |||  
+FC12044_91407      1 CTC-TGTGGCACCCCATCCCTCA-CTT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      11/27 (40.7%)
+# Similarity:    11/27 (40.7%)
+# Gaps:           8/27 (29.6%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAG-ACGGCAT-----ACGA     21
+                     |.  |.|..| ||..|||     ||..
+FC12044_91407      1 CT--CTGTGGCACCCCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      15/52 (28.8%)
+# Similarity:    15/52 (28.8%)
+# Gaps:          35/52 (67.3%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATAC-----GGCGACC---ACCGACAGGTTCAGAGTTCTACAGTCC     42
+                            |     ||| |||   .||  |    |||     ||.      
+FC12044_91407      1 -------CTCTGTGGC-ACCCCATCC--C----TCA-----CTT------     25
+
+Illumina_Smal     43 GA     44
+                       
+FC12044_91407     26 --     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_720_610
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGT----CCGACGATC--------     32
+                                     || |.||    ||  |.|||        
+FC12044_91407      1 ----------------CT-CTGTGGCACC--CCATCCCTCACTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      12/40 (30.0%)
+# Similarity:    12/40 (30.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 37.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GAT-------CGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+                     |||       |...|.|   ||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAA---CGTA------------CATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+                      |   |.|||   || ||    .|||..|.|   |   
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      13/69 (18.8%)
+# Similarity:    13/69 (18.8%)
+# Gaps:          55/69 (79.7%)
+# Score: 47.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA     39
+                                ||| |.|||               ||||         ||
+FC12044_91407      1 GATTTTTTAACAAT-AAACG---------------TACA---------TA     25
+
+Illumina_Geno     40 CACGACGCTCTTCCGATCT     58
+                                        
+FC12044_91407     26 -------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          31/45 (68.9%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----------CAAGCAGAAGACG-GCATACGAGCTCTTCCGATCT     34
+                               |||    .|.||| .||||                
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA----------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+                      |   |.|||   || ||    .|||..|.|   |   
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          21/39 (53.8%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GAT-------CGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+                     |||       | .|..|.| ||.||     .|       
+FC12044_91407      1 GATTTTTTAAC-AATAAAC-GTACA-----TA-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+                      |   |.|||   || ||    .|||..|.|   |   
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      13/69 (18.8%)
+# Similarity:    13/69 (18.8%)
+# Gaps:          55/69 (79.7%)
+# Score: 47.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----------AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTA     39
+                                ||| |.|||               ||||         ||
+FC12044_91407      1 GATTTTTTAACAAT-AAACG---------------TACA---------TA     25
+
+Illumina_Pair     40 CACGACGCTCTTCCGATCT     58
+                                        
+FC12044_91407     26 -------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 72
+# Identity:      11/72 (15.3%)
+# Similarity:    11/72 (15.3%)
+# Gaps:          58/72 (80.6%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----------CAAGCAGAAGACG-GCATACGAGATCGGTCTCGGCATTCC     39
+                               |||    .|.||| .||||                     
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---------------------     25
+
+Illumina_Pair     40 TGCTGAACCGCTCTTCCGATCT     61
+                                           
+FC12044_91407     26 ----------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 33.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -ACACTCTTTCCCTACAC----GACGCTCTTCCGATCT     33
+                      |   |.|||   || ||    .|||..|.|   |   
+FC12044_91407      1 GA---TTTTT---TA-ACAATAAACGTACAT---A---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          24/43 (55.8%)
+# Score: 28.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAAC------CGCTCTTCCGATCT     37
+                      |.|      .||     |.|||      ||..|.|   |   
+FC12044_91407      1 -GAT------TTT-----TTAACAATAAACGTACAT---A---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGAAC-------     26
+                     |||        |.|..|||..|.|||       
+FC12044_91407      1 GAT--------TTTTTAACAATAAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      14/33 (42.4%)
+# Similarity:    14/33 (42.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCT-ACAGT--CCG-AC---     26
+                        |.||     ||.| |||.|  .|| ||   
+FC12044_91407      1 ---GATT-----TTTTAACAATAAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+                               |||    .|.||| .||||   
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       6/37 (16.2%)
+# Similarity:     6/37 (16.2%)
+# Gaps:          28/37 (75.7%)
+# Score: 26.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------------TCGTATGCCGTCTTCTGCTTG     21
+                                     .||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+                               |||    .|.||| .||||   
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+                                ||| |.||               ||.||      ||   
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+
+Illumina_DpnI     40 TCCGA     44
+                          
+FC12044_91407     26 -----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          15/36 (41.7%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCT-ACAGTCCGACGATC---     32
+                          |.||     ||.| |||.| ..|||..|   
+FC12044_91407      1 -----GATT-----TTTTAACAAT-AAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      11/28 (39.3%)
+# Similarity:    11/28 (39.3%)
+# Gaps:          10/28 (35.7%)
+# Score: 47.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGAAC-------     21
+                        ||.|.|..|||..|.|||       
+FC12044_91407      1 ---GATTTTTTAACAATAAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      16/33 (48.5%)
+# Similarity:    16/33 (48.5%)
+# Gaps:          12/33 (36.4%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCT-ACAGT--CCG-ACATG     29
+                        |.||     ||.| |||.|  .|| ||||.
+FC12044_91407      1 ---GATT-----TTTTAACAATAAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------CAAGCAGAAGACG-GCATACGANN     23
+                               |||    .|.||| .||||     
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       6/37 (16.2%)
+# Similarity:     6/37 (16.2%)
+# Gaps:          28/37 (75.7%)
+# Score: 26.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------------TCGTATGCCGTCTTCTGCTTG     21
+                                     .||||            |.|.
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------CAAGCAGAAGACG-GCATACGA     21
+                               |||    .|.||| .||||   
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+                                ||| |.||               ||.||      ||   
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+
+Illumina_NlaI     40 TCCGA     44
+                          
+FC12044_91407     26 -----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          15/36 (41.7%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCT-ACAGT--CCG-ACATG     32
+                           |.||     ||.| |||.|  .|| ||||.
+FC12044_91407      1 ------GATT-----TTTTAACAATAAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------CAAGCAGAAGACG-GCATACGA     21
+                               |||    .|.||| .||||   
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          11/31 (35.5%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCT--ACAGTCCGACGATC---     26
+                          ||.||.|  |||.| ..|||..|   
+FC12044_91407      1 -----GATTTTTTAACAAT-AAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       6/38 (15.8%)
+# Similarity:     6/38 (15.8%)
+# Gaps:          29/38 (76.3%)
+# Score: 26.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------------TCGTATGCCGTCTTCTGCTTGT     22
+                                     .||||            |.|. 
+FC12044_91407      1 GATTTTTTAACAATAAACGTA------------CATA-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------CAAGCAGAAGACG-GCATACGA     21
+                               |||    .|.||| .||||   
+FC12044_91407      1 GATTTTTTAACAA----TAAACGTACATA---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 55
+# Identity:      12/55 (21.8%)
+# Similarity:    12/55 (21.8%)
+# Gaps:          41/55 (74.5%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -----------AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG     39
+                                ||| |.||               ||.||      ||   
+FC12044_91407      1 GATTTTTTAACAAT-AAAC---------------GTACA------TA---     25
+
+Illumina_Smal     40 TCCGA     44
+                          
+FC12044_91407     26 -----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_345_133
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          15/36 (41.7%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCT-ACAGTCCGACGATC---     32
+                          |.||     ||.| |||.| ..|||..|   
+FC12044_91407      1 -----GATT-----TTTTAACAAT-AAACGTACATA     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GAT---CGGAAGAGCTCGTATGCCGTCTT---CTGCTTG     33
+                     |.|   |.|    |||       ||||||   ||.|   
+FC12044_91407      1 GTTGCCCAG----GCT-------CGTCTTGAACTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+                          .||.|||. .|.||    ||||  ||.||  
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      16/61 (26.2%)
+# Similarity:    16/61 (26.2%)
+# Gaps:          39/61 (63.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCT-ACACGACGCTC     49
+                                                  . ||.|||. .|.||    ||
+FC12044_91407      1 -----------------------------G-TTGCCCAGGCTCG----TC     16
+
+Illumina_Geno     50 TTCCGATCT--     58
+                     ||  ||.||  
+FC12044_91407     17 TT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          21/40 (52.5%)
+# Score: 69.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+                           ||.||     .||.|.|  ||.|||  |      
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+                          .||.|||. .|.||    ||||  ||.||  
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 46.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTT---CAG------CAGGAA-TGCCGAG     32
+                                  |||   |||      |..||| | ||   
+FC12044_91407      1 -------------GTTGCCCAGGCTCGTCTTGAACT-CC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+                          .||.|||. .|.||    ||||  ||.||  
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      16/61 (26.2%)
+# Similarity:    16/61 (26.2%)
+# Gaps:          39/61 (63.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCT-ACACGACGCTC     49
+                                                  . ||.|||. .|.||    ||
+FC12044_91407      1 -----------------------------G-TTGCCCAGGCTCG----TC     16
+
+Illumina_Pair     50 TTCCGATCT--     58
+                     ||  ||.||  
+FC12044_91407     17 TT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      19/64 (29.7%)
+# Similarity:    19/64 (29.7%)
+# Gaps:          42/64 (65.6%)
+# Score: 83.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGAT---CGGTCTCGGCATTCCTGCTGAAC     47
+                                          |.|   |.|.||||   |  ||  |||||
+FC12044_91407      1 ---------------------GTTGCCCAGGCTCG---T--CT--TGAAC     22
+
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+                           |||     
+FC12044_91407     23 ------TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCT-ACACGACGCTCTTCCGATCT--     33
+                          .||.|||. .|.||    ||||  ||.||  
+FC12044_91407      1 -----GTTGCCCAGGCTCG----TCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      17/43 (39.5%)
+# Similarity:    17/43 (39.5%)
+# Gaps:          24/43 (55.8%)
+# Score: 82.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                           |.|.||||   |  ||  |||||      |||     
+FC12044_91407      1 GTTGCCCAGGCTCG---T--CT--TGAAC------TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          19/35 (54.3%)
+# Score: 77.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---------GATCGTCGGACTGTAGAACTCTGAAC     26
+                              |.|||||      |.||||||    |
+FC12044_91407      1 GTTGCCCAGGCTCGTC------TTGAACTC----C     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 63.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----ACAGGTTCAGAGTTCT---ACAGTCCGAC     26
+                          .||||.||.    |||   ||  |||   
+FC12044_91407      1 GTTGCCCAGGCTCG----TCTTGAAC--TCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+                           ||.||     .||.|.|  ||     
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          16/31 (51.6%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGC-------CGTCTT---CTGCTTG     21
+                       || |||       ||||||   ||.|   
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+                           ||.||     .||.|.|  ||     
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+                        |.|.|     |||  |.|    ||.    |||   ||  |||  
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----CGACAGGTTCAGAGTTCT---ACAGTCCGACGATC     32
+                          |  ||||.||.    |||   ||  |||       
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 61.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----------TCGGACTGTAGAACTCTGAAC     21
+                                || |.|  |.||||||    |
+FC12044_91407      1 GTTGCCCAGGCTC-GTC--TTGAACTC----C     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 63.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----ACAGGTTCAGAGTTCT---ACAGTCCGACATG     29
+                          .||||.||.    |||   ||  |||      
+FC12044_91407      1 GTTGCCCAGGCTCG----TCTTGAAC--TCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          20/34 (58.8%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------CAAGCAGAAGACGGCATA-----CGANN     23
+                           ||.||     .||.|.|.     |    
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTTGAACTCC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          16/31 (51.6%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGC-------CGTCTT---CTGCTTG     21
+                       || |||       ||||||   ||.|   
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------CAAGCAGAAGACGGCATACGA-----     21
+                           ||.||     .||.|.|  ||     
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+                        |.|.|     |||  |.|    ||.    |||   ||  |||  
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----CCGACAGGTTCAGAGTTCT---ACAGTCCGACATG     32
+                         ||  ||||.||.    |||   ||  |||      
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------CAAGCAGAAGACGGCATACGA-----     21
+                           ||.||     .||.|.|  ||     
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      15/34 (44.1%)
+# Similarity:    15/34 (44.1%)
+# Gaps:          17/34 (50.0%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTT---CAGAGT--TCT---ACAGTCCGACGATC     26
+                     |||   |||..|  |||   ||  |||       
+FC12044_91407      1 GTTGCCCAGGCTCGTCTTGAAC--TCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          17/32 (53.1%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGC-------CGTCTT---CTGCTTGT     22
+                       || |||       ||||||   ||.|    
+FC12044_91407      1 --GT-TGCCCAGGCTCGTCTTGAACTCC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------CAAGCAGAAGACGGCATACGA-----     21
+                           ||.||     .||.|.|  ||     
+FC12044_91407      1 GTTGCCCAGGC-----TCGTCTT--GAACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 75.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCT---ACAGTCCGA     44
+                        |.|.|     |||  |.|    ||.    |||   ||  |||  
+FC12044_91407      1 ---GTTGC-----CCA--GGC----TCG----TCTTGAAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_106_131
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -----CGACAGGTTCAGAGTTCT---ACAGTCCGACGATC     32
+                          |  ||||.||.    |||   ||  |||       
+FC12044_91407      1 GTTGCC--CAGGCTCG----TCTTGAAC--TCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          16/37 (43.2%)
+# Score: 55.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -GATCGGAAGAGCTCGTATGCCGT--C-TTCTGCTTG     33
+                      ||| .||||     |||.|  ||  | |.|||    
+FC12044_91407      1 TGAT-TGAAG-----GTAGG--GTAGCATACTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                                      .||         |||. |               
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATC---TA-CACTCTTTCCCTACACGACG     46
+                       ||||.    ||      ||.|.   || ||         |||. |   
+FC12044_91407      1 --TGATT----GA------AGGTAGGGTAGCA---------TACT-G---     25
+
+Illumina_Geno     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          27/43 (62.8%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----CAAGCAGAAGACG---GCATAC-GAGCTCTTCCGATCT     34
+                          .|||  |.||  |   |||||| |              
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG--------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                                      .||         |||. |               
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      19/35 (54.3%)
+# Similarity:    19/35 (54.3%)
+# Gaps:          13/35 (37.1%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -GATCGGAAG--AGCGGTTCAGCAGGAATGCCGAG     32
+                      ||| .||||  || |||  |||    ||.|.|  
+FC12044_91407      1 TGAT-TGAAGGTAG-GGT--AGC----ATACTG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                                      .||         |||. |               
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATC---TA-CACTCTTTCCCTACACGACG     46
+                       ||||.    ||      ||.|.   || ||         |||. |   
+FC12044_91407      1 --TGATT----GA------AGGTAGGGTAGCA---------TACT-G---     25
+
+Illumina_Pair     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          38/62 (61.3%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGA-AGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG     49
+                          .|| .||.||  || |     |||   .||||. |||        
+FC12044_91407      1 -----TGATTGAAGG--TA-G-----GGT---AGCATA-CTG--------     25
+
+Illumina_Pair     50 CTCTTCCGATCT     61
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       6/50 (12.0%)
+# Similarity:     6/50 (12.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 18.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----------------ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                                      .||         |||. |               
+FC12044_91407      1 TGATTGAAGGTAGGGTAGCA---------TACT-G---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      10/49 (20.4%)
+# Similarity:    10/49 (20.4%)
+# Gaps:          36/49 (73.5%)
+# Score: 38.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ------------CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                                 .|||   .||||. |||                    
+FC12044_91407      1 TGATTGAAGGTAGGGT---AGCATA-CTG--------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      14/31 (45.2%)
+# Similarity:    14/31 (45.2%)
+# Gaps:          11/31 (35.5%)
+# Score: 49.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----GATCGTCGGACTGTAGAACTCTGAAC     26
+                          ||..||.||   ||||.|..|||   
+FC12044_91407      1 TGATTGAAGGTAGG---GTAGCATACTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------ACAGGTTCAGAGTT-C-TACAGTCCGAC     26
+                           | ||||  ||.||. | |||.|      
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+                          .|||  |.||  |   |||||| | 
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------TCGTATGCCGT--C-TTCTGCTTG     21
+                            ..|||.|  ||  | |.|||    
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+                          .|||  |.||  |   |||||| | 
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+                       ||||.    ||        ||||  ||.||. | |||.|     
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTT-C-TACAGTCCGACGATC     32
+                         .|| ||||  ||.||. | |||.|          
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------TCGGACTGTAGAACTCTGAAC     21
+                               |.||   ||||.|..|||   
+FC12044_91407      1 TGATTGAAGGTAGG---GTAGCATACTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------ACAGGTTCAGAGTT-C-TACAGTCCGACATG     29
+                           | ||||  ||.||. | |||.|         
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          16/32 (50.0%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----CAAGCAGAAGACG---GCATAC-GANN     23
+                          .|||  |.||  |   |||||| |   
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------TCGTATGCCGT--C-TTCTGCTTG     21
+                            ..|||.|  ||  | |.|||    
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+                          .|||  |.||  |   |||||| | 
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+                       ||||.    ||        ||||  ||.||. | |||.|     
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 46.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----CCGACAGGTTCAGAGTT-C-TACAGTCCGACATG     32
+                            || ||||  ||.||. | |||.|         
+FC12044_91407      1 TGATT--GA-AGGT--AGGGTAGCATACTG---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+                          .|||  |.||  |   |||||| | 
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      11/37 (29.7%)
+# Similarity:    11/37 (29.7%)
+# Gaps:          23/37 (62.2%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---------GTTCAGAGTT-C-TACAGTCCGACGATC     26
+                              ||  ||.||. | |||.|          
+FC12044_91407      1 TGATTGAAGGT--AGGGTAGCATACTG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          17/32 (53.1%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------TCGTATGCCGT--C-TTCTGCTTGT     22
+                            ..|||.|  ||  | |.|||     
+FC12044_91407      1 TGATTGAAGGTAGG--GTAGCATACTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -----CAAGCAGAAGACG---GCATAC-GA     21
+                          .|||  |.||  |   |||||| | 
+FC12044_91407      1 TGATTGAAG--GTAG--GGTAGCATACTG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      19/46 (41.3%)
+# Similarity:    19/46 (41.3%)
+# Gaps:          23/46 (50.0%)
+# Score: 66.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTT-C-TACAGTCCGA     44
+                       ||||.    ||        ||||  ||.||. | |||.|     
+FC12044_91407      1 --TGATT----GA--------AGGT--AGGGTAGCATACTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_916_471
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CGACAGGTTCAGAGTT-C-TACAGTCCGACGATC     32
+                         .|| ||||  ||.||. | |||.|          
+FC12044_91407      1 TGATTGA-AGGT--AGGGTAGCATACTG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTAT---GCCG-----TCTTCTGCTTG     33
+                               ||||..||   ||.|     .|  |||    
+FC12044_91407      1 ----------GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+                                         ||   |||.||              || 
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCA------CCGAGATCTACACTCTTTCCCTACACGA     44
+                              || .|||      |.|||.   |.|       |||.     
+FC12044_91407      1 ---------GC-TCCAATAGCGCAGAGG---AAA-------CCTG-----     25
+
+Illumina_Geno     45 CGCTCTTCCGATCT     58
+                                   
+FC12044_91407     26 --------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          27/43 (62.8%)
+# Score: 58.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----CAA----GCAGAAGACGGCATACGAGCTCTTCCGATCT-     34
+                         |||    |||||.|     |.||             || 
+FC12044_91407      1 GCTCCAATAGCGCAGAGG-----AAAC-------------CTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+                                         ||   |||.||              || 
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      20/33 (60.6%)
+# Similarity:    20/33 (60.6%)
+# Gaps:           9/33 (27.3%)
+# Score: 68.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCC-GAG     32
+                     |.|| .||.||||   ||| |||||. || |  
+FC12044_91407      1 GCTC-CAATAGCG---CAG-AGGAAA-CCTG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+                                         ||   |||.||              || 
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCA------CCGAGATCTACACTCTTTCCCTACACGA     44
+                              || .|||      |.|||.   |.|       |||.     
+FC12044_91407      1 ---------GC-TCCAATAGCGCAGAGG---AAA-------CCTG-----     25
+
+Illumina_Pair     45 CGCTCTTCCGATCT     58
+                                   
+FC12044_91407     26 --------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      14/69 (20.3%)
+# Similarity:    14/69 (20.3%)
+# Gaps:          52/69 (75.4%)
+# Score: 64.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----CAA----GCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGC     42
+                         |||    |||||.|                        |..|||| 
+FC12044_91407      1 GCTCCAATAGCGCAGAGG------------------------AAACCTG-     25
+
+Illumina_Pair     43 TGAACCGCTCTTCCGATCT     61
+                                        
+FC12044_91407     26 -------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       9/48 (18.8%)
+# Similarity:     9/48 (18.8%)
+# Gaps:          38/48 (79.2%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTCCGAT--------------CT-     33
+                                         ||   |||.||              || 
+FC12044_91407      1 --------------------GC---TCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      16/44 (36.4%)
+# Similarity:    16/44 (36.4%)
+# Gaps:          26/44 (59.1%)
+# Score: 61.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATT--CCTGCTG----AACC-GCTCTTCCGATCT     37
+                      |  |||  ||.|  |  ||.|    |||| |            
+FC12044_91407      1 -G--CTC--CAATAGC--GCAGAGGAAACCTG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAG---------AACTCTGAAC     26
+                     |.||      |..|||         ||| |||   
+FC12044_91407      1 GCTC------CAATAGCGCAGAGGAAAC-CTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      12/35 (34.3%)
+# Similarity:    12/35 (34.3%)
+# Gaps:          19/35 (54.3%)
+# Score: 31.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------ACAG-GTTCAGAG--TTCTACAGTCCGAC     26
+                           |.|| |  |||||  ..|  |.|      
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+                         |||    |||||.||   |.|       
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --TCGTAT---GCCG-----TCTTCTGCTTG     21
+                       ||..||   ||.|     .|  |||    
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+                         |||    |||||.||   |.|       
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+                                 . |.||.|.|| |  |||||  ..|  |.|     
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          21/39 (53.8%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CGACAG-GTTCAGAG--TTCTACAGTCCGACGATC     32
+                         |.|.|| |  |||||  ..|  |.|          
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --TCGGACTGTAG---------AACTCTGAAC     21
+                       ||   |..|||         ||| |||   
+FC12044_91407      1 GCTC---CAATAGCGCAGAGGAAAC-CTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      12/38 (31.6%)
+# Similarity:    12/38 (31.6%)
+# Gaps:          22/38 (57.9%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTC-CG--------ACATG     29
+                                |  ||.||.|. ||        ||.||
+FC12044_91407      1 -----------G--CTCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      12/34 (35.3%)
+# Similarity:    12/34 (35.3%)
+# Gaps:          20/34 (58.8%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----CAA----GCAGAAGA---CGGCATACGANN     23
+                         |||    |||||.||   |.|         
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --TCGTAT---GCCG-----TCTTCTGCTTG     21
+                       ||..||   ||.|     .|  |||    
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+                         |||    |||||.||   |.|       
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+                                 . |.||.|.|| |  |||||  ..|  |.|     
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          15/36 (41.7%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CCGACAG-GTTCAGAGTTCTACAGTCCGACATG     32
+                        ||.|.|| |  |||||.     |..||    ||
+FC12044_91407      1 GCTCCAATAGCG--CAGAGG-----AAACC----TG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+                         |||    |||||.||   |.|       
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       9/39 (23.1%)
+# Similarity:     9/39 (23.1%)
+# Gaps:          27/39 (69.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGA---CG-------ATC---     26
+                                 .|  |||.|   ||       |.|   
+FC12044_91407      1 ------------GC--TCCAATAGCGCAGAGGAAACCTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          17/32 (53.1%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --TCGTAT---GCCG-----TCTTCTGCTTGT     22
+                       ||..||   ||.|     .|  |||     
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAAC--CTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CAA----GCAGAAGA---CGGCATACGA     21
+                         |||    |||||.||   |.|       
+FC12044_91407      1 GCTCCAATAGCGCAGAGGAAACCTG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          25/47 (53.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAG-GTTCAGAG--TTCTACAGTCCGA     44
+                                 . |.||.|.|| |  |||||  ..|  |.|     
+FC12044_91407      1 ------------G-CTCCAATAGCG--CAGAGGAAAC--CTG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_57_85
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          21/39 (53.8%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CGACAG-GTTCAGAG--TTCTACAGTCCGACGATC     32
+                         |.|.|| |  |||||  ..|  |.|          
+FC12044_91407      1 GCTCCAATAGCG--CAGAGGAAAC--CTG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:       8/50 (16.0%)
+# Similarity:     8/50 (16.0%)
+# Gaps:          42/50 (84.0%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG-----------------     33
+                                          |    |||||||                 
+FC12044_91407      1 ---------------------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+                                         ||| |||..|| .||          
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      10/70 (14.3%)
+# Similarity:    10/70 (14.3%)
+# Gaps:          57/70 (81.4%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-C     49
+                                                                  ||| |
+FC12044_91407      1 ---------------------------------------------GCTGC      5
+
+Illumina_Geno     50 TTCCGA-TCT----------     58
+                     ||..|| .||          
+FC12044_91407      6 TTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          27/43 (62.8%)
+# Score: 47.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----C-----AAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+                         |     |.||.||    ||||.  |||            
+FC12044_91407      1 GCTGCTTGGGAGGCTGA----GGCAG--GAG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+                                         ||| |||..|| .||          
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ---GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+                        |.|.||.|| ||.|.  .||||||.       
+FC12044_91407      1 GCTGCTTGGGAG-GCTGA--GGCAGGAG-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+                                         ||| |||..|| .||          
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      10/70 (14.3%)
+# Similarity:    10/70 (14.3%)
+# Gaps:          57/70 (81.4%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT-C     49
+                                                                  ||| |
+FC12044_91407      1 ---------------------------------------------GCTGC      5
+
+Illumina_Pair     50 TTCCGA-TCT----------     58
+                     ||..|| .||          
+FC12044_91407      6 TTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      13/70 (18.6%)
+# Similarity:    13/70 (18.6%)
+# Gaps:          54/70 (77.1%)
+# Score: 47.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----C-----AAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTG     41
+                         |     |.||.||    ||||.  |||                   
+FC12044_91407      1 GCTGCTTGGGAGGCTGA----GGCAG--GAG-------------------     25
+
+Illumina_Pair     42 CTGAACCGCTCTTCCGATCT     61
+                                         
+FC12044_91407     26 --------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      10/45 (22.2%)
+# Similarity:    10/45 (22.2%)
+# Gaps:          32/45 (71.1%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCT-CTTCCGA-TCT----------     33
+                                         ||| |||..|| .||          
+FC12044_91407      1 --------------------GCTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      13/45 (28.9%)
+# Similarity:    13/45 (28.9%)
+# Gaps:          28/45 (62.2%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCT---GAACCGCTCTTCCGA-TCT----     37
+                               .   |||||   ||.  |||     || .|.    
+FC12044_91407      1 ----------G---CTGCTTGGGAG--GCT-----GAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      10/39 (25.6%)
+# Similarity:    10/39 (25.6%)
+# Gaps:          27/39 (69.2%)
+# Score: 40.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACT-------CTGA-AC-----     26
+                              .|||     ||       |||| .|     
+FC12044_91407      1 ---------GCTG-----CTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTT------CAGAGTTCTACAGTCCGAC     26
+                     .|.|.||      |.|||    .|||   ||.
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+                                  |  |.||||.||           
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCTTG-----------------     21
+                              |    |||||||                 
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+                                  |  |.||||.||           
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                        |.|.|      ||| ||     |.||||   ||              
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+
+Illumina_DpnI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 40.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -CGAC-----AGGTTCAGAGTTCTACAGTCCGACGATC     32
+                      |..|     |||  |.|||    .|||   || |   
+FC12044_91407      1 GCTGCTTGGGAGG--CTGAG----GCAG---GA-G---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 40.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAACT-------CTGA-AC-----     21
+                         .|||     ||       |||| .|     
+FC12044_91407      1 ----GCTG-----CTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          16/35 (45.7%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTT------CAGAGTTCTACAGTCCGACATG     29
+                     .|.|.||      |.|||    .|||   ||   |
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GA---G     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          28/38 (73.7%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------------C--AAGCAGAAGACGGCATACGANN     23
+                                  |  |.||||.||             
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCTTG-----------------     21
+                              |    |||||||                 
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------------C--AAGCAGAAGACGGCATACGA     21
+                                  |  |.||||.||           
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                        |.|.|      ||| ||     |.||||   ||              
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+
+Illumina_NlaI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      14/38 (36.8%)
+# Similarity:    14/38 (36.8%)
+# Gaps:          19/38 (50.0%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTT------CAGAGTTCTACAGTCCGACATG     32
+                        .|.|.||      |.|||    .|||   ||   |
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGAG----GCAG---GA---G     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------------C--AAGCAGAAGACGGCATACGA     21
+                                  |  |.||||.||           
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---G-TT------CAGAGTTCTACAGTCCGACGATC     26
+                        | ||      |.|||    .|||   || |   
+FC12044_91407      1 GCTGCTTGGGAGGCTGAG----GCAG---GA-G---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       9/38 (23.7%)
+# Similarity:     9/38 (23.7%)
+# Gaps:          29/38 (76.3%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCCGTCTTCTGCTTG------T----------     22
+                              |    |||||||      |          
+FC12044_91407      1 ---------G----CTGCTTGGGAGGCTGAGGCAGGAG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          26/36 (72.2%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------------C--AAGCAGAAGACGGCATACGA     21
+                                  |  |.||||.||           
+FC12044_91407      1 GCTGCTTGGGAGGCTGAGGCAGGAG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                        |.|.|      ||| ||     |.||||   ||              
+FC12044_91407      1 ---GCTGCTTGGGAGGCTGA-----GGCAGG---AG--------------     25
+
+Illumina_Smal     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_10_437
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 40.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -CGAC-----AGGTTCAGAGTTCTACAGTCCGACGATC     32
+                      |..|     |||  |.|||    .|||   || |   
+FC12044_91407      1 GCTGCTTGGGAGG--CTGAG----GCAG---GA-G---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          26/42 (61.9%)
+# Score: 52.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGT---ATGC------CGTCTTCTGCTTG     33
+                            |||.||  |   ||.|      ||.||        
+FC12044_91407      1 -------AGACCT--TTGGATACAATGAACGACT--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+                       ||   ||||      |||     ||||  ||          
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          49/66 (74.2%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TAC-----AC     42
+                                        ||| |      ||||      |||     ||
+FC12044_91407      1 -------------------AGA-C------CTTT---GGATACAATGAAC     21
+
+Illumina_Geno     43 GACGCTCTTCCGATCT     58
+                     ||  ||          
+FC12044_91407     22 GA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      17/41 (41.5%)
+# Similarity:    17/41 (41.5%)
+# Gaps:          23/41 (56.1%)
+# Score: 63.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGAC----GGCATAC---GAGCTCTTCCGATCT     34
+                             ||||    || ||||   ||.      ||| ||
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAA------CGA-CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+                       ||   ||||      |||     ||||  ||          
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          17/37 (45.9%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGC----GGTTCAGCAGGAATGCCGAG-     32
+                            |||.|    |.|.||  |.|||   |||. 
+FC12044_91407      1 -------AGACCTTTGGATACA--ATGAA---CGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+                       ||   ||||      |||     ||||  ||          
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          49/66 (74.2%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TAC-----AC     42
+                                        ||| |      ||||      |||     ||
+FC12044_91407      1 -------------------AGA-C------CTTT---GGATACAATGAAC     21
+
+Illumina_Pair     43 GACGCTCTTCCGATCT     58
+                     ||  ||          
+FC12044_91407     22 GA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      17/66 (25.8%)
+# Similarity:    17/66 (25.8%)
+# Gaps:          46/66 (69.7%)
+# Score: 74.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGAC----GGCATACGA-GATCGGTCTCGGCATTCCTGCTGA     45
+                             ||||    || ||||.| ||.| |.||               
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAAC-GACT---------------     25
+
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+                                     
+FC12044_91407     26 ----------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      15/43 (34.9%)
+# Similarity:    15/43 (34.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 --ACACTCTTTCCC---TAC-----ACGACGCTCTTCCGATCT     33
+                       ||   ||||      |||     ||||  ||          
+FC12044_91407      1 AGAC---CTTT---GGATACAATGAACGA--CT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      12/45 (26.7%)
+# Similarity:    12/45 (26.7%)
+# Gaps:          28/45 (62.2%)
+# Score: 52.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCC------TGC--TGAACCGCTCTTCCGATCT     37
+                               |..||      |.|  |||||..||          
+FC12044_91407      1 ----------AGACCTTTGGATACAATGAACGACT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          13/32 (40.6%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGA-CTGTAGA-ACTCTGAAC----     26
+                            .|| ||.|.|| ||..|||||    
+FC12044_91407      1 -------AGACCTTTGGATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTC-------TACA--GTCCGAC-     26
+                             |||   |       ||||  |..|||| 
+FC12044_91407      1 --------AGA---CCTTTGGATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+                             ||||    || ||||.|         
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------TCGTATGC------CGTCTTCTGCTTG     21
+                           |.|.||.|      ||.||        
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+                             ||||    || ||||.|         
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+                              . ||||         ||..||    ||||  |..|||  
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTC-------TACAGTCCG-ACGATC-     32
+                               |||   |       ||||.|  | |||| | 
+FC12044_91407      1 ----------AGA---CCTTTGGATACAAT--GAACGA-CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGA-CTGTAGA-ACTCTGAAC----     21
+                       .|| ||.|.|| ||..|||||    
+FC12044_91407      1 --AGACCTTTGGATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      13/38 (34.2%)
+# Similarity:    13/38 (34.2%)
+# Gaps:          22/38 (57.9%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTC-------TACA--GTCCGACATG     29
+                             |||   |       ||||  |..||||.  
+FC12044_91407      1 --------AGA---CCTTTGGATACAATGAACGACT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 46.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGAC----GGCATACGANN-------     23
+                             ||||    || ||||.|..       
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------TCGTATGC------CGTCTTCTGCTTG     21
+                           |.|.||.|      ||.||        
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGAC----GGCATACGA---------     21
+                             ||||    || ||||.|         
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+                              . ||||         ||..||    ||||  |..|||  
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          17/37 (45.9%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CCGACAGGTTCAGAGTTCTACA--GTCCGACATG     32
+                        ||      ||..||    ||||  |..||||.  
+FC12044_91407      1 AGACC------TTTGGA----TACAATGAACGACT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGAC----GGCATACGA---------     21
+                             ||||    || ||||.|         
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTC-------TACAGTCCG-ACGATC-     26
+                         |||   |       ||||.|  | |||| | 
+FC12044_91407      1 ----AGA---CCTTTGGATACAAT--GAACGA-CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          21/34 (61.8%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------TCGTATGC------CGTCTTCTGCTTGT     22
+                           |.|.||.|      ||.||         
+FC12044_91407      1 AGACCTTTGGATACAATGAACGACT---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGAC----GGCATACGA---------     21
+                             ||||    || ||||.|         
+FC12044_91407      1 --------AGACCTTTGG-ATACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACA--GTCCGA--     44
+                              . ||||         ||..||    ||||  |..|||  
+FC12044_91407      1 ---------A-GACC---------TTTGGA----TACAATGAACGACT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_154_436
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTC-------TACAGTCCG-ACGATC-     32
+                               |||   |       ||||.|  | |||| | 
+FC12044_91407      1 ----------AGA---CCTTTGGATACAAT--GAACGA-CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          30/44 (68.2%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+                                ||   |.||.||     |||||           
+FC12044_91407      1 AGGGAATTTTAGA---GGAGGGC-----TGCCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                          |     |||   ||.|.|| |..||.|||    
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      15/62 (24.2%)
+# Similarity:    15/62 (24.2%)
+# Gaps:          41/62 (66.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+                         |||..||  |.|      |||..||.|              ||   
+FC12044_91407      1 AGGGAATTTTA--GAG------GAGGGCTGC--------------CG---     25
+
+Illumina_Geno     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          19/39 (48.7%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCAT-----ACGAGCTCTTCCGATCT     34
+                             ||  ||.||     |.|||..||.|||    
+FC12044_91407      1 --------AG--GGAATTTTAGAGGAGGGCTGCCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                          |     |||   ||.|.|| |..||.|||    
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 61.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGG---TTCAGCAGGAA---TGCCGAG     32
+                              || ||   ||.|| ||||.   |||||  
+FC12044_91407      1 ---------AG-GGAATTTTAG-AGGAGGGCTGCCG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                          |     |||   ||.|.|| |..||.|||    
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      15/62 (24.2%)
+# Similarity:    15/62 (24.2%)
+# Gaps:          41/62 (66.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+                         |||..||  |.|      |||..||.|              ||   
+FC12044_91407      1 AGGGAATTTTA--GAG------GAGGGCTGC--------------CG---     25
+
+Illumina_Pair     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      20/61 (32.8%)
+# Similarity:    20/61 (32.8%)
+# Gaps:          36/61 (59.0%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                             ||  ||.||...|||  ||.   ||       ||||  ||| 
+FC12044_91407      1 --------AG--GGAATTTTAGA--GGA---GG-------GCTG--CCG-     25
+
+Illumina_Pair     51 TCTTCCGATCT     61
+                                
+FC12044_91407     26 -----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          18/38 (47.4%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                          |     |||   ||.|.|| |..||.|||    
+FC12044_91407      1 AGGGAA-----TTT---TAGAGGA-GGGCTGCCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      14/46 (30.4%)
+# Similarity:    14/46 (30.4%)
+# Gaps:          30/46 (65.2%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCT---------GCTGAACCGCTCTTCCGATCT     37
+                      .|    ||.|||  |         ||||  |||            
+FC12044_91407      1 -AG----GGAATT--TTAGAGGAGGGCTG--CCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:       9/41 (22.0%)
+# Similarity:     9/41 (22.0%)
+# Gaps:          31/41 (75.6%)
+# Score: 28.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --------------GATCGTCGGACTGTAGAACTCTGAAC-     26
+                                   ||     ||.|||     |      | 
+FC12044_91407      1 AGGGAATTTTAGAGGA-----GGGCTG-----C------CG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTA--------CAGTCCGAC     26
+                       |||    ||.||.||        |.| |||  
+FC12044_91407      1 --AGG----GAATTTTAGAGGAGGGCTG-CCG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAG-------CAGAAGACGGCATACGA     21
+                       ||       .|||.||.|||...|| 
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --------TCGTA---------TGCCGTCTTCTGCTTG     21
+                             |  ||         |||||           
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAG-------CAGAAGACGGCATACGA     21
+                       ||       .|||.||.|||...|| 
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+                                          |||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+
+Illumina_DpnI     43 GA     44
+                     | 
+FC12044_91407     25 G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTA--------CAGTCCGACGATC     32
+                         |||    ||.||.||        |.| |||      
+FC12044_91407      1 ----AGG----GAATTTTAGAGGAGGGCTG-CCG------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 22.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------TCGGACTGTAGA-----ACT-CTGAAC-     21
+                           |     |.||||     .|| |    | 
+FC12044_91407      1 AGGGAAT-----TTTAGAGGAGGGCTGC----CG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          20/37 (54.1%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTA--------CAGTCCGACATG     29
+                       |||    ||.||.||        |.| |||     
+FC12044_91407      1 --AGG----GAATTTTAGAGGAGGGCTG-CCG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          12/30 (40.0%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAG-------CAGAAGACGGCATACGANN     23
+                       ||       .|||.||.|||...||   
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       8/38 (21.1%)
+# Similarity:     8/38 (21.1%)
+# Gaps:          30/38 (78.9%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --------TCGTA---------TGCCGTCTTCTGCTTG     21
+                             |  ||         |||||           
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAG-------CAGAAGACGGCATACGA     21
+                       ||       .|||.||.|||...|| 
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+                                          |||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+
+Illumina_NlaI     43 GA     44
+                     | 
+FC12044_91407     25 G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTA--------CAGTCCGACATG     32
+                          |||    ||.||.||        |.| |||     
+FC12044_91407      1 -----AGG----GAATTTTAGAGGAGGGCTG-CCG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAG-------CAGAAGACGGCATACGA     21
+                       ||       .|||.||.|||...|| 
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCA--GAGTTCTA--------CAGTCCGACGATC     26
+                         |  ||.||.||        |.| |||      
+FC12044_91407      1 ----AGGGAATTTTAGAGGAGGGCTG-CCG------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       8/39 (20.5%)
+# Similarity:     8/39 (20.5%)
+# Gaps:          31/39 (79.5%)
+# Score: 34.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --------TCGTA---------TGCCGTCTTCTGCTTGT     22
+                             |  ||         |||||            
+FC12044_91407      1 AGGGAATTT--TAGAGGAGGGCTGCCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAG-------CAGAAGACGGCATACGA     21
+                       ||       .|||.||.|||...|| 
+FC12044_91407      1 --AGGGAATTTTAGAGGAGGGCTGCCG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 52
+# Identity:      14/52 (26.9%)
+# Similarity:    14/52 (26.9%)
+# Gaps:          35/52 (67.3%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTA--------CAGTCC     42
+                                          |||    ||.||.||        |.| ||
+FC12044_91407      1 ---------------------AGG----GAATTTTAGAGGAGGGCTG-CC     24
+
+Illumina_Smal     43 GA     44
+                     | 
+FC12044_91407     25 G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_336_64
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTA--------CAGTCCGACGATC     32
+                         |||    ||.||.||        |.| |||      
+FC12044_91407      1 ----AGG----GAATTTTAGAGGAGGGCTG-CCG------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          28/43 (65.1%)
+# Score: 50.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+                               |.||.|    ||| |      ||| ||      
+FC12044_91407      1 TCTCCATGTTGGTCAG----GCT-G------GTC-TC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+                         ||  |||.|     .|| |  |||     |.||| 
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 65.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCT     48
+                                           |||.|| |.||  ||        |.|||
+FC12044_91407      1 ----------------------TCTCCA-TGTTGGTC--------AGGCT     19
+
+Illumina_Geno     49 CTTCCGATCT-     58
+                          |.||| 
+FC12044_91407     20 -----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      13/44 (29.5%)
+# Similarity:    13/44 (29.5%)
+# Gaps:          29/44 (65.9%)
+# Score: 53.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----CAAG-----CAGAAGACGGCATACGAGCTCTTCCGATCT-     34
+                         ||.|     |||              |||     |.||| 
+FC12044_91407      1 TCTCCATGTTGGTCAG--------------GCT-----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+                         ||  |||.|     .|| |  |||     |.||| 
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----------GATCGGAAGAGC-GGT-TCAGCAGGAATGCCGAG     32
+                               |.||.|    || ||| ||               
+FC12044_91407      1 TCTCCATGTTGGTCAG----GCTGGTCTC---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+                         ||  |||.|     .|| |  |||     |.||| 
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 65.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTT--TCCCTACACGACGCT     48
+                                           |||.|| |.||  ||        |.|||
+FC12044_91407      1 ----------------------TCTCCA-TGTTGGTC--------AGGCT     19
+
+Illumina_Pair     49 CTTCCGATCT-     58
+                          |.||| 
+FC12044_91407     20 -----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      16/66 (24.2%)
+# Similarity:    16/66 (24.2%)
+# Gaps:          46/66 (69.7%)
+# Score: 81.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCAT-----TCCTGCTGA     45
+                                                ||||  |||     ||..||||.
+FC12044_91407      1 ---------------------------TCTC--CATGTTGGTCAGGCTGG     21
+
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+                     .   |||         
+FC12044_91407     22 T---CTC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCT-----ACACGACGCTCTTCCGATCT-     33
+                         ||  |||.|     .|| |  |||     |.||| 
+FC12044_91407      1 ----TC--TCCATGTTGGTCA-G--GCT-----GGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      16/42 (38.1%)
+# Similarity:    16/42 (38.1%)
+# Gaps:          22/42 (52.4%)
+# Score: 81.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCAT-----TCCTGCTGAACCGCTCTTCCGATCT     37
+                        ||||  |||     ||..||||..   |||         
+FC12044_91407      1 ---TCTC--CATGTTGGTCAGGCTGGT---CTC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 64.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------GATCGTCGGACTGTAGAACTCTGAAC     26
+                            |.|.|||.|.||   |..|||     
+FC12044_91407      1 TCTCCATGTTGGTCAGGCT---GGTCTC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      10/38 (26.3%)
+# Similarity:    10/38 (26.3%)
+# Gaps:          25/38 (65.8%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACA-----GTCCGAC-------     26
+                                  |||.||     |||.|.|       
+FC12044_91407      1 -------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------------CAAGCAGAAGACGGCATACGA     21
+                                  ||.||.|  |.|     .|  
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 46.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --TC---GTATG--CCGTCT--TCTGCTTG     21
+                       ||   || ||  |.|.||  ||| |   
+FC12044_91407      1 TCTCCATGT-TGGTCAGGCTGGTCT-C---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------------CAAGCAGAAGACGGCATACGA     21
+                                  ||.||.|  |.|     .|  
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+                                 . |.||      |.||||  |.|.  ||| |       
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 64.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--     32
+                                    |||.||     |||.|.| |.||  
+FC12044_91407      1 ---------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      12/28 (42.9%)
+# Similarity:    12/28 (42.9%)
+# Gaps:          10/28 (35.7%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --TCGGAC-TGTAGAACT--CTGAAC--     21
+                       ||   | |||.|..|.  |||..|  
+FC12044_91407      1 TCTC---CATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          24/39 (61.5%)
+# Score: 56.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACA-----GTCCGACATG-----     29
+                                  |||.||     |||.|.| ||     
+FC12044_91407      1 -------------TCTCCATGTTGGTCAGGC-TGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       8/36 (22.2%)
+# Similarity:     8/36 (22.2%)
+# Gaps:          24/36 (66.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCATACGANN     23
+                                  ||.||.|  |.|     .|    
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 46.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --TC---GTATG--CCGTCT--TCTGCTTG     21
+                       ||   || ||  |.|.||  ||| |   
+FC12044_91407      1 TCTCCATGT-TGGTCAGGCTGGTCT-C---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCATACGA     21
+                                  ||.||.|  |.|     .|  
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+                                 . |.||      |.||||  |.|.  ||| |       
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CC------GACAGGTTCAGAGTTCTACAGTCCGACATG     32
+                        ||      |.||||  |.|.  ||| |           
+FC12044_91407      1 TCTCCATGTTGGTCAGG--CTGG--TCT-C-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------------CAAGCAGAAGACGGCATACGA     21
+                                  ||.||.|  |.|     .|  
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      13/34 (38.2%)
+# Similarity:    13/34 (38.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 64.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACA-----GTCCGAC-GATC--     26
+                              |||.||     |||.|.| |.||  
+FC12044_91407      1 ---------TCTCCATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          11/29 (37.9%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCCGTCT---TCT-GCTTGT---     22
+                     || |   ||.|.|   ||. |||.||   
+FC12044_91407      1 TC-T---CCATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       8/34 (23.5%)
+# Similarity:     8/34 (23.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------------CAAGCAGAAGACGGCATACGA     21
+                                  ||.||.|  |.|     .|  
+FC12044_91407      1 TCTCCATGTTGGTCAGGCTG--GTC-----TC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 50
+# Identity:      14/50 (28.0%)
+# Similarity:    14/50 (28.0%)
+# Gaps:          31/50 (62.0%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACC------GACAGGTTCAGAGTTCTACAGTCCGA     44
+                                 . |.||      |.||||  |.|.  ||| |       
+FC12044_91407      1 ------------T-CTCCATGTTGGTCAGG--CTGG--TCT-C-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_620_233
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 64.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACA-----GTCCGAC-GATC--     32
+                                    |||.||     |||.|.| |.||  
+FC12044_91407      1 ---------------TCTCCATGTTGGTCAGGCTGGTCTC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          20/39 (51.3%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -GA---TCGGAAGAGCTCGTATG--CCGTCTTCTGCTTG     33
+                      ||   |||  |||   ||.|.|  |||.|         
+FC12044_91407      1 TGAACGTCG--AGA---CGCAAGGCCCGCC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+                                 |..||     |||||.   |  |||. | 
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      13/68 (19.1%)
+# Similarity:    13/68 (19.1%)
+# Gaps:          53/68 (77.9%)
+# Score: 70.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTAC     40
+                       ||| |||.|||          ||.||                      
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+
+Illumina_Geno     41 ACGACGCTCTTCCGATCT     58
+                                       
+FC12044_91407     26 ------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          17/38 (44.7%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAA-GACGGCATACG---AGCTCTTCCGATCT     34
+                          .||| |.||  |.|||   .||    |||. | 
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGC----CCGC-C-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+                                 |..||     |||||.   |  |||. | 
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          15/36 (41.7%)
+# Score: 56.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -GA---TCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+                      ||   |||  ||| ||   ||  |||...|||   
+FC12044_91407      1 TGAACGTCG--AGA-CG---CA--AGGCCCGCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+                                 |..||     |||||.   |  |||. | 
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      13/68 (19.1%)
+# Similarity:    13/68 (19.1%)
+# Gaps:          53/68 (77.9%)
+# Score: 70.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGA----------CCACCGAGATCTACACTCTTTCCCTAC     40
+                       ||| |||.|||          ||.||                      
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+
+Illumina_Pair     41 ACGACGCTCTTCCGATCT     58
+                                       
+FC12044_91407     26 ------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      21/61 (34.4%)
+# Similarity:    21/61 (34.4%)
+# Gaps:          36/61 (59.0%)
+# Score: 85.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                          .||  |||    .||||| ||  |..|||            ||||
+FC12044_91407      1 -----TGA--ACG----TCGAGA-CG--CAAGGC------------CCGC     24
+
+Illumina_Pair     51 TCTTCCGATCT     61
+                      |         
+FC12044_91407     25 -C---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC-----GACGCT---CTTCCGATCT     33
+                                 |..||     |||||.   |  |||. | 
+FC12044_91407      1 ------------TGAACGTCGAGACGCAAGGC--CCGC-C-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      15/45 (33.3%)
+# Similarity:    15/45 (33.3%)
+# Gaps:          28/45 (62.2%)
+# Score: 61.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ----CGGTCTCG----GCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                         ||   |||    |||.   .||    |||| |         
+FC12044_91407      1 TGAACG---TCGAGACGCAA---GGC----CCGC-C---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -GATCGTCGGACTGTAGAACTCTGAAC-----     26
+                      ||.|||||      || ||.|....|     
+FC12044_91407      1 TGAACGTCG------AG-ACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:          11/31 (35.5%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---ACAGGTTCAGAGTTCTACA--GTCCGAC     26
+                        ||.   || ||| .| .||  |.|||.|
+FC12044_91407      1 TGAACG---TC-GAG-AC-GCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+                          .||| |.||  |.||| |         
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------TCGT-----ATG--CCGTCTTCTGCTTG     21
+                           |||.     |.|  |||.|         
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+                          .||| |.||  |.||| |         
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+                       ||| |||.|  ||| ||    |||.|                      
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+
+Illumina_DpnI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 54.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTTCTAC---AGTCCGACGATC-     32
+                         ||.|       |||    ||   ||.||  ||  | 
+FC12044_91407      1 TGAACGTC-------GAG----ACGCAAGGCC--CG--CC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      10/35 (28.6%)
+# Similarity:    10/35 (28.6%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAAC-TCTGA-AC------------     21
+                              .|||| || || ||            
+FC12044_91407      1 ---------TGAACGTC-GAGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      15/34 (44.1%)
+# Similarity:    15/34 (44.1%)
+# Gaps:          14/34 (41.2%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---ACAGGTTCAGAGTTCTACA--GTCCGACATG     29
+                        ||.   || ||| .| .||  |.|||.|   
+FC12044_91407      1 TGAACG---TC-GAG-AC-GCAAGGCCCGCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------CAA---GCAGAAGACGGCATACGANN     23
+                            |.|   ||| |.|.|.||   |    
+FC12044_91407      1 TGAACGTCGAGACGCA-AGGCCCGC---C----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------TCGT-----ATG--CCGTCTTCTGCTTG     21
+                           |||.     |.|  |||.|         
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAA-GACGGCATACG-A---------     21
+                          .||| |.||  |.||| |         
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+                       ||| |||.|  ||| ||    |||.|                      
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+
+Illumina_NlaI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          17/37 (45.9%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CCGACAGGTTCAGAGTTCTACA--GTCCGACATG     32
+                        .||.|       ||| .| .||  |.|||.|   
+FC12044_91407      1 TGAACGTC-------GAG-AC-GCAAGGCCCGCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAA-GACGGCATACG-A---------     21
+                          .||| |.||  |.||| |         
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -----GTTCAGAGTTCTAC---AGTCCGACGATC-     26
+                          | || |||    ||   ||.||  ||  | 
+FC12044_91407      1 TGAACG-TC-GAG----ACGCAAGGCC--CG--CC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          23/35 (65.7%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------TCGT-----ATG--CCGTCTTCTGCTTGT     22
+                           |||.     |.|  |||.|          
+FC12044_91407      1 TGAACGTCGAGACGCAAGGCCCGCC----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAA-GACGGCATACG-A---------     21
+                          .||| |.||  |.||| |         
+FC12044_91407      1 -----TGAACGTCG--AGACGCAAGGCCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 71.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGC--GAC-CA----CCGACAGGTTCAGAGTTCTACAGTCCG     43
+                       ||| |||.|  ||| ||    |||.|                      
+FC12044_91407      1 --TGA-ACGTCGAGACGCAAGGCCCGCC----------------------     25
+
+Illumina_Smal     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_902_349
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 54.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CGACAGGTTCAGAGTTCTAC---AGTCCGACGATC-     32
+                         ||.|       |||    ||   ||.||  ||  | 
+FC12044_91407      1 TGAACGTC-------GAG----ACGCAAGGCC--CG--CC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          30/44 (68.2%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----------GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+                                |  |||..|.||              |||   |
+FC12044_91407      1 CTGTCCCCACGG--CGGGGGGGC--------------CTG---G     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+                          ||.||||  ||||.|      ||         ||  
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      15/66 (22.7%)
+# Similarity:    15/66 (22.7%)
+# Gaps:          49/66 (74.2%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC-----     45
+                                                   ||.||||  ||||.|     
+FC12044_91407      1 ------------------------------CTGTCCC--CACGGCGGGGG     18
+
+Illumina_Geno     46 -GCTCTTCCGATCT--     58
+                      ||         ||  
+FC12044_91407     19 GGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      12/42 (28.6%)
+# Similarity:    12/42 (28.6%)
+# Gaps:          25/42 (59.5%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT--     34
+                           |   |     |||||....|.||         ||  
+FC12044_91407      1 CTGTCCC---C-----ACGGCGGGGGGGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+                          ||.||||  ||||.|      ||         ||  
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          15/36 (41.7%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGT----TCAGCAGGAATGCCGAG     32
+                                |.||    .|.||.||...|||..|
+FC12044_91407      1 -----------CTGTCCCCACGGCGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+                          ||.||||  ||||.|      ||         ||  
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      15/66 (22.7%)
+# Similarity:    15/66 (22.7%)
+# Gaps:          49/66 (74.2%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC-----     45
+                                                   ||.||||  ||||.|     
+FC12044_91407      1 ------------------------------CTGTCCC--CACGGCGGGGG     18
+
+Illumina_Pair     46 -GCTCTTCCGATCT--     58
+                      ||         ||  
+FC12044_91407     19 GGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 67
+# Identity:      17/67 (25.4%)
+# Similarity:    17/67 (25.4%)
+# Gaps:          48/67 (71.6%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ------CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTG     44
+                           |   |     ||||    ||.|   ||    |||       |||
+FC12044_91407      1 CTGTCCC---C-----ACGG----CGGG---GG----GGC-------CTG     24
+
+Illumina_Pair     45 AACCGCTCTTCCGATCT     61
+                     .                
+FC12044_91407     25 G----------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC------GCTCTTCCGATCT--     33
+                          ||.||||  ||||.|      ||         ||  
+FC12044_91407      1 -----CTGTCCC--CACGGCGGGGGGGC---------CTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      13/47 (27.7%)
+# Similarity:    13/47 (27.7%)
+# Gaps:          32/47 (68.1%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGT---CTCGGCATT-------CCTGCTGAACCGCTCTTCCGATCT     37
+                     |.||   |.||||          ||||  |                 
+FC12044_91407      1 CTGTCCCCACGGC---GGGGGGGCCTG--G-----------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          13/32 (40.6%)
+# Score: 38.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATC-GT-----CGGACTGTAGAACTCTGAAC     26
+                        | ||     ||| |.|..|..| |||.  
+FC12044_91407      1 ---CTGTCCCCACGG-CGGGGGGGC-CTGG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       7/42 (16.7%)
+# Similarity:     7/42 (16.7%)
+# Gaps:          33/42 (78.6%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTC----CGAC------------     26
+                                      |.|||    ||.|            
+FC12044_91407      1 -----------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------CA-AGCAGAAGACGGCATACGA     21
+                            || .||.|..|  |||.|. | 
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 29.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---TCGTATGCCGTCTTCTGCTTG-----------     21
+                        ||     ||  | .|.||  |           
+FC12044_91407      1 CTGTC-----CC--C-ACGGC--GGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------CA-AGCAGAAGACGGCATACGA     21
+                            || .||.|..|  |||.|. | 
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+                               | |.|| || ||.|   |.|.|      .|.||  | 
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGT-CCGACGATC------------     32
+                                        |.|| ||.|||. |            
+FC12044_91407      1 -------------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      10/29 (34.5%)
+# Similarity:    10/29 (34.5%)
+# Gaps:          12/29 (41.4%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --------TCGGACTGTAGAACTCTGAAC     21
+                             .||| |.|..|..| |||.  
+FC12044_91407      1 CTGTCCCCACGG-CGGGGGGGC-CTGG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       9/42 (21.4%)
+# Similarity:     9/42 (21.4%)
+# Gaps:          30/42 (71.4%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCC------------GACATG-     29
+                                      |.||||            |.|.|| 
+FC12044_91407      1 -----------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          14/31 (45.2%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------CA-AGCAGAAGACGGCATACGANN     23
+                            || .||.|..|  |||.|. |   
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          24/35 (68.6%)
+# Score: 29.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---TCGTATGCCGTCTTCTGCTTG-----------     21
+                        ||     ||  | .|.||  |           
+FC12044_91407      1 CTGTC-----CC--C-ACGGC--GGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------CA-AGCAGAAGACGGCATACGA     21
+                            || .||.|..|  |||.|. | 
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+                               | |.|| || ||.|   |.|.|      .|.||  | 
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAGTCC------------GACATG-     32
+                                         |.||||            |.|.|| 
+FC12044_91407      1 --------------------CTGTCCCCACGGCGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------CA-AGCAGAAGACGGCATACGA     21
+                            || .||.|..|  |||.|. | 
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:       9/39 (23.1%)
+# Similarity:     9/39 (23.1%)
+# Gaps:          27/39 (69.2%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAGT-CCGACGATC------------     26
+                                  |.|| ||.|||. |            
+FC12044_91407      1 -------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      10/31 (32.3%)
+# Similarity:    10/31 (32.3%)
+# Gaps:          15/31 (48.4%)
+# Score: 27.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---TCGTATGCCGTCTTCTG------CTTGT     22
+                        ||     ||..|..|.|      ||.| 
+FC12044_91407      1 CTGTC-----CCCACGGCGGGGGGGCCTGG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      11/29 (37.9%)
+# Similarity:    11/29 (37.9%)
+# Gaps:          12/29 (41.4%)
+# Score: 32.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------CA-AGCAGAAGACGGCATACGA     21
+                            || .||.|..|  |||.|. | 
+FC12044_91407      1 CTGTCCCCACGGCGGGGG--GGCCTG-G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      16/47 (34.0%)
+# Similarity:    16/47 (34.0%)
+# Gaps:          25/47 (53.2%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGC-GACCACCGACAGGTTCAGAGTTCTACAGTCC--GA     44
+                               | |.|| || ||.|   |.|.|      .|.||  | 
+FC12044_91407      1 ----------CTGTCC-CC-ACGG---CGGGG------GGGCCTGG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_40_618
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:       9/45 (20.0%)
+# Similarity:     9/45 (20.0%)
+# Gaps:          33/45 (73.3%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGT-CCGACGATC------------     32
+                                        |.|| ||.|||. |            
+FC12044_91407      1 -------------------CTGTCCCCACGG-CGGGGGGGCCTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          12/35 (34.3%)
+# Score: 79.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGCC--GTCTTCTGCTTG     33
+                          ||.|..|||.||..||  |.||| ||    
+FC12044_91407      1 -----GATGTACTCTTACACCCAGACTT-TG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                          ||.||       |||||         ||...||   
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 93.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+                                         |||.|||.||       |||||        
+FC12044_91407      1 --------------------GATGTACTCT-------TACAC--------     15
+
+Illumina_Geno     51 TCCGATCT---     58
+                      ||...||   
+FC12044_91407     16 -CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          23/41 (56.1%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTT----CCGATCT---     34
+                           ||.|      ||    |||||    ||...||   
+FC12044_91407      1 ------GATG------TA----CTCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                          ||.||       |||||         ||...||   
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      12/39 (30.8%)
+# Similarity:    12/39 (30.8%)
+# Gaps:          21/39 (53.8%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTC-AGCAGGAATGCCGAG------     32
+                          ||.|..|   || ..||      ||.||      
+FC12044_91407      1 -----GATGTAC---TCTTACA------CCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                          ||.||       |||||         ||...||   
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 93.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+                                         |||.|||.||       |||||        
+FC12044_91407      1 --------------------GATGTACTCT-------TACAC--------     15
+
+Illumina_Pair     51 TCCGATCT---     58
+                      ||...||   
+FC12044_91407     16 -CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      19/65 (29.2%)
+# Similarity:    19/65 (29.2%)
+# Gaps:          44/65 (67.7%)
+# Score: 69.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGT-CTCGGCATTCCTGCTGAACCG     49
+                                          |||  || |||    ||.|      ||| 
+FC12044_91407      1 ---------------------GAT--GTACTC----TTAC------ACC-     16
+
+Illumina_Pair     50 CTCTTCCGATCT---     61
+                          |.|| ||   
+FC12044_91407     17 -----CAGA-CTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          24/41 (58.5%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -----ACACTCTTTCCCTACACGACGCTCTTCCGATCT---     33
+                          ||.||       |||||         ||...||   
+FC12044_91407      1 GATGTACTCT-------TACAC---------CCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      13/44 (29.5%)
+# Similarity:    13/44 (29.5%)
+# Gaps:          26/44 (59.1%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTCTT----CCGATCT---     37
+                                     |.||.|   |||||    ||...||   
+FC12044_91407      1 ----------------GATGTA---CTCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      13/37 (35.1%)
+# Similarity:    13/37 (35.1%)
+# Gaps:          23/37 (62.2%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGA-AC----------     26
+                             || |||   |||||.| ||          
+FC12044_91407      1 --------GA-TGT---ACTCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          21/36 (58.3%)
+# Score: 63.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGA-GTTC---TACAGTCC--GAC----     26
+                              || ||.|   ||||  ||  |||    
+FC12044_91407      1 ---------GATGTACTCTTACA--CCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+                           ||.| || .|.|||     ||     
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -------TCGTATGCC--GTCTTCTGCTTG     21
+                            ||.||..||  |.||| ||    
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+                           ||.| || .|.|||     ||     
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                     .||| |||    .|   ||||        ||||.|| |.        
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGA-GTTC---TACAGTCC--GAC---GATC     32
+                                || ||.|   ||||  ||  |||   |   
+FC12044_91407      1 -----------GATGTACTCTTACA--CCCAGACTTTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      13/32 (40.6%)
+# Similarity:    13/32 (40.6%)
+# Gaps:          18/32 (56.2%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAACTCTGA-AC----------     21
+                        || |||   |||||.| ||          
+FC12044_91407      1 ---GA-TGT---ACTCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          18/36 (50.0%)
+# Score: 65.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGA-GTTC---TACAGTCC--GAC-ATG     29
+                              || ||.|   ||||  ||  ||| .||
+FC12044_91407      1 ---------GATGTACTCTTACA--CCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      10/35 (28.6%)
+# Similarity:    10/35 (28.6%)
+# Gaps:          22/35 (62.9%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCATAC-----------GANN     23
+                           ||.| || .|.|||           |   
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------TCGTATGCC--GTCTTCTGCTTG     21
+                            ||.||..||  |.||| ||    
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+                           ||.| || .|.|||     ||     
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                     .||| |||    .|   ||||        ||||.|| |.        
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 65.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGA-GTTC---TACAGTCC--GAC-ATG     32
+                                 || ||.|   ||||  ||  ||| .||
+FC12044_91407      1 ------------GATGTACTCTTACA--CCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+                           ||.| || .|.|||     ||     
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          19/35 (54.3%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---GTTCAGAGTTC-TACAGTCC--GAC---GATC     26
+                        ||.|     || ||||  ||  |||   |   
+FC12044_91407      1 GATGTAC-----TCTTACA--CCCAGACTTTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          15/31 (48.4%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -------TCGTATGCC--GTCTTCTGCTTGT     22
+                            ||.||..||  |.||| ||     
+FC12044_91407      1 GATGTACTCTTACACCCAGACTT-TG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAG-ACGGCATAC-----GA-----     21
+                           ||.| || .|.|||     ||     
+FC12044_91407      1 ------GATGTAC-TCTTACACCCAGACTTTG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGAC---CACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                     .||| |||    .|   ||||        ||||.|| |.        
+FC12044_91407      1 GATG-TAC----TCTTACACC--------CAGACTT-TG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_83_511
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          25/41 (61.0%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGA-GTTC---TACAGTCC--GAC---GATC     32
+                                || ||.|   ||||  ||  |||   |   
+FC12044_91407      1 -----------GATGTACTCTTACA--CCCAGACTTTG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      14/42 (33.3%)
+# Similarity:    14/42 (33.3%)
+# Gaps:          26/42 (61.9%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATC---GGAAGA-----GCTCGTATGCC-GTCTTCTGCTTG     33
+                       ||   ||..||     ||||     || ||          
+FC12044_91407      1 --TCAAGGGTGGATCTTGGCTC-----CCAGT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||       .||||         |  ||||  ||..|  
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 57.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT     48
+                       ||.|.|             .|||||            |.      |||
+FC12044_91407      1 TCAAGGGT-------------GGATCT------------TG------GCT     19
+
+Illumina_Geno     49 CTTCCGATCT     58
+                     |  ||..|  
+FC12044_91407     20 C--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          11/35 (31.4%)
+# Score: 63.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+                      |||| .|..||  .|.|   .||||  ||..|  
+FC12044_91407      1 TCAAG-GGTGGA--TCTT---GGCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||       .||||         |  ||||  ||..|  
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          13/35 (37.1%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCA--GCAGGAATGCCGAG-     32
+                       ||  |||.|.||.||.  ||.      ||.|| 
+FC12044_91407      1 --TC--AAGGGTGGATCTTGGCT------CCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||       .||||         |  ||||  ||..|  
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      17/60 (28.3%)
+# Similarity:    17/60 (28.3%)
+# Gaps:          37/60 (61.7%)
+# Score: 57.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 --AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCT     48
+                       ||.|.|             .|||||            |.      |||
+FC12044_91407      1 TCAAGGGT-------------GGATCT------------TG------GCT     19
+
+Illumina_Pair     49 CTTCCGATCT     58
+                     |  ||..|  
+FC12044_91407     20 C--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      18/62 (29.0%)
+# Similarity:    18/62 (29.0%)
+# Gaps:          38/62 (61.3%)
+# Score: 74.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCG     49
+                      ||||                 |.|.|.|||.|||  |||  |.|.    
+FC12044_91407      1 TCAAG-----------------GGTGGATCTTGGC--TCC--CAGT----     25
+
+Illumina_Pair     50 CTCTTCCGATCT     61
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACA-------CTCTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||       .||||         |  ||||  ||..|  
+FC12044_91407      1 TCAAGGGTGGATCTT---------G--GCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      19/41 (46.3%)
+# Similarity:    19/41 (46.3%)
+# Gaps:          20/41 (48.8%)
+# Score: 65.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -C---GGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                      |   |||   || ||  ||  ||    ||||  ||..|  
+FC12044_91407      1 TCAAGGGT---GG-AT--CT--TG----GCTC--CCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTC--GGACTGTAGAACT---CTGAAC-----     26
+                          ||  ||   ||.||.||   ||   |     
+FC12044_91407      1 -----TCAAGG---GTGGATCTTGGCT---CCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 58.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTC-AGAGT---TCTA------CAGTCCGAC     26
+                           || ||.||   |||.      ||||     
+FC12044_91407      1 ------TCAAGGGTGGATCTTGGCTCCCAGT-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+                      |||| .|..|| |  ||| |.|.|  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TC--GTATGCCG-TCTT--CTGCTTG-     21
+                     ||  |..||  | ||||  ||.|..| 
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+                      |||| .|..|| |  ||| |.|.|  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+                                              || ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+
+Illumina_DpnI     41 CCGA     44
+                         
+FC12044_91407     26 ----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTC-AGAGT---TCTA--CAGTCCGACGATC     32
+                             || ||.||   |||.  |  |||  |..| 
+FC12044_91407      1 --------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          16/31 (51.6%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TC--GGACTGTAGAACT---CTGAAC-----     21
+                     ||  ||   ||.||.||   ||   |     
+FC12044_91407      1 TCAAGG---GTGGATCTTGGCT---CCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          18/36 (50.0%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTC-AGAGT---TCTA--CAGTCCGACA-TG     29
+                           || ||.||   |||.  |  |||  || | 
+FC12044_91407      1 ------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          10/29 (34.5%)
+# Score: 38.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -CAAGCAGAAGA-C--GGCATAC--GANN     23
+                      |||| .|..|| |  ||| |.|  |.  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TC--GTATGCCG-TCTT--CTGCTTG-     21
+                     ||  |..||  | ||||  ||.|..| 
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+                      |||| .|..|| |  ||| |.|.|  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+                                              || ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+
+Illumina_NlaI     41 CCGA     44
+                         
+FC12044_91407     26 ----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTC-AGAGT---TCTA--CAGTCCGACA-TG     32
+                              || ||.||   |||.  |  |||  || | 
+FC12044_91407      1 ---------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+                      |||| .|..|| |  ||| |.|.|  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      15/32 (46.9%)
+# Similarity:    15/32 (46.9%)
+# Gaps:          13/32 (40.6%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTC-AGAGT---TCTA--CAGTCCGACGATC     26
+                       || ||.||   |||.  |  |||  |..| 
+FC12044_91407      1 --TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      15/27 (55.6%)
+# Similarity:    15/27 (55.6%)
+# Gaps:           7/27 (25.9%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TC--GTATGCCG-TCTT--CTGCTTGT     22
+                     ||  |..||  | ||||  ||.|..||
+FC12044_91407      1 TCAAGGGTG--GATCTTGGCTCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -CAAGCAGAAGA-C--GGCATACGA--     21
+                      |||| .|..|| |  ||| |.|.|  
+FC12044_91407      1 TCAAG-GGTGGATCTTGGC-TCCCAGT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      13/54 (24.1%)
+# Similarity:    13/54 (24.1%)
+# Gaps:          39/54 (72.2%)
+# Score: 58.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGT---TCTA------CAGT     40
+                                              || ||.||   |||.      ||||
+FC12044_91407      1 -------------------------TCAAGGGTGGATCTTGGCTCCCAGT     25
+
+Illumina_Smal     41 CCGA     44
+                         
+FC12044_91407     26 ----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_76_246
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      15/38 (39.5%)
+# Similarity:    15/38 (39.5%)
+# Gaps:          19/38 (50.0%)
+# Score: 60.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTC-AGAGT---TCTA--CAGTCCGACGATC     32
+                             || ||.||   |||.  |  |||  |..| 
+FC12044_91407      1 --------TCAAGGGTGGATCTTGGC--TCC--CAGT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          18/38 (47.4%)
+# Score: 63.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GAT--CGGAAGAGCTCGTATGCCGTCTT---CTGCTTG     33
+                       |  ||..|||| |  |.|||  ||||   |      
+FC12044_91407      1 --TTGCGACAGAG-T--TTTGC--TCTTGTCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+                            ||      .||||        |||||  |||     
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 59
+# Identity:      20/59 (33.9%)
+# Similarity:    20/59 (33.9%)
+# Gaps:          35/59 (59.3%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTC     49
+                          |.  |||| ||  |||.|.|  .||||| |||             
+FC12044_91407      1 -----TT--GCGA-CA--GAGTTTT--GCTCTTGTCC-------------     25
+
+Illumina_Geno     50 TTCCGATCT     58
+                              
+FC12044_91407     26 ---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          23/41 (56.1%)
+# Score: 69.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGA-----GCTCT--TCCGATCT     34
+                            ..| ||.||   ||     |||||  |||     
+FC12044_91407      1 -------TTG-CGACA---GAGTTTTGCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+                            ||      .||||        |||||  |||     
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      15/35 (42.9%)
+# Similarity:    15/35 (42.9%)
+# Gaps:          13/35 (37.1%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GAT--CGGAAGAGCGGTTCAGCAGGAATG-CCGAG     32
+                       |  ||..|||   |||..||.  ..|| ||   
+FC12044_91407      1 --TTGCGACAGA---GTTTTGCT--CTTGTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+                            ||      .||||        |||||  |||     
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 59
+# Identity:      20/59 (33.9%)
+# Similarity:    20/59 (33.9%)
+# Gaps:          35/59 (59.3%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTT-TCCCTACACGACGCTC     49
+                          |.  |||| ||  |||.|.|  .||||| |||             
+FC12044_91407      1 -----TT--GCGA-CA--GAGTTTT--GCTCTTGTCC-------------     25
+
+Illumina_Pair     50 TTCCGATCT     58
+                              
+FC12044_91407     26 ---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 63
+# Identity:      19/63 (30.2%)
+# Similarity:    19/63 (30.2%)
+# Gaps:          40/63 (63.5%)
+# Score: 77.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                            ..| ||.||   |||.|           ||           ||
+FC12044_91407      1 -------TTG-CGACA---GAGTT-----------TT-----------GC     17
+
+Illumina_Pair     51 TCT--TCCGATCT     61
+                     |||  |||     
+FC12044_91407     18 TCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 74.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGAC--------GCTCT--TCCGATCT     33
+                            ||      .||||        |||||  |||     
+FC12044_91407      1 -------TT------GCGACAGAGTTTTGCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      15/46 (32.6%)
+# Similarity:    15/46 (32.6%)
+# Gaps:          30/46 (65.2%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCT--CGGCA-----TTCCTGCTGAACCGCTCT--TCCGATCT     37
+                          |  ||.||     ||           |||||  |||     
+FC12044_91407      1 -----TTGCGACAGAGTTTT-----------GCTCTTGTCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:           7/29 (24.1%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GAT--CGTCGGACTGTAGAACTCTGAAC-     26
+                       |  ||.|.||.|.|.|  ||||...| 
+FC12044_91407      1 --TTGCGACAGAGTTTTG--CTCTTGTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTT----CAGAGTTCTAC---AGTCCGAC     26
+                          ||    |||||||.|.|   .||||   
+FC12044_91407      1 -----TTGCGACAGAGTTTTGCTCTTGTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+                        |.| ||||          .|.|  |      
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGC--C---GTCTT-CTGCTTG---     21
+                         .|||  |   ||.|| || ||||   
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+                        |.| ||||          .|.|  |      
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+                          |.  ||||             |||||||.|.|   .||||  
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          21/39 (53.8%)
+# Score: 86.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---CGACAG-GTT---CAGAGTTCTACAGTCCGACGATC     32
+                        |||||| |||   |     |||  .||||       
+FC12044_91407      1 TTGCGACAGAGTTTTGC-----TCT--TGTCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 28
+# Identity:      13/28 (46.4%)
+# Similarity:    13/28 (46.4%)
+# Gaps:          10/28 (35.7%)
+# Score: 49.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 T--CGGACTG----TAGAACTCTGAAC-     21
+                     |  | |||.|    |.|  ||||...| 
+FC12044_91407      1 TTGC-GACAGAGTTTTG--CTCTTGTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      15/36 (41.7%)
+# Similarity:    15/36 (41.7%)
+# Gaps:          18/36 (50.0%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTT----CAGAGTTCTAC---AGTCCGACATG     29
+                          ||    |||||||.|.|   .||||      
+FC12044_91407      1 -----TTGCGACAGAGTTTTGCTCTTGTCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       9/36 (25.0%)
+# Similarity:     9/36 (25.0%)
+# Gaps:          24/36 (66.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CAAGCAGA----------AGACGGCATACGANN     23
+                        |.| ||||          .|.|  |        
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:          14/30 (46.7%)
+# Score: 56.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGC--C---GTCTT-CTGCTTG---     21
+                         .|||  |   ||.|| || ||||   
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CAAGCAGA----------AGACGGCATACGA     21
+                        |.| ||||          .|.|  |      
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+                          |.  ||||             |||||||.|.|   .||||  
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTT----CAGAGTTCTAC---AGTCCGACATG     32
+                             ||    |||||||.|.|   .||||      
+FC12044_91407      1 --------TTGCGACAGAGTTTTGCTCTTGTCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---CAAGCAGA----------AGACGGCATACGA     21
+                        |.| ||||          .|.|  |      
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTT----CAGAGTTCTAC---AGTCCGACGATC     26
+                      ||    |||||||.|.|   .||||       
+FC12044_91407      1 -TTGCGACAGAGTTTTGCTCTTGTCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      15/30 (50.0%)
+# Similarity:    15/30 (50.0%)
+# Gaps:          13/30 (43.3%)
+# Score: 63.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGC--C---GTCTT-CTGCTTGT--     22
+                         .|||  |   ||.|| || |||||  
+FC12044_91407      1 ----TTGCGACAGAGTTTTGCT-CTTGTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          22/34 (64.7%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---CAAGCAGA----------AGACGGCATACGA     21
+                        |.| ||||          .|.|  |      
+FC12044_91407      1 TTGCGA-CAGAGTTTTGCTCTTGTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      18/47 (38.3%)
+# Similarity:    18/47 (38.3%)
+# Gaps:          25/47 (53.2%)
+# Score: 83.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTAC---AGTCCGA     44
+                          |.  ||||             |||||||.|.|   .||||  
+FC12044_91407      1 -----TT--GCGA-------------CAGAGTTTTGCTCTTGTCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_303_427
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          21/39 (53.8%)
+# Score: 86.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---CGACAG-GTT---CAGAGTTCTACAGTCCGACGATC     32
+                        |||||| |||   |     |||  .||||       
+FC12044_91407      1 TTGCGACAGAGTTTTGC-----TCT--TGTCC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAG----AGCTC---GTATGCCGTCTTCTGCTTG     33
+                       ||   .|    |||||   | |.||||.|         
+FC12044_91407      1 --TC---TGCTCCAGCTCCAAG-ACGCCGCC---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+                         |||. |||  ||.||.||||| | .||     
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      19/60 (31.7%)
+# Similarity:    19/60 (31.7%)
+# Gaps:          37/60 (61.7%)
+# Score: 99.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCT     48
+                                           |||.|      |||  ||.||.||||| 
+FC12044_91407      1 ----------------------TCTGC------TCCAGCTCCAAGACGC-     21
+
+Illumina_Geno     49 CTTCCGATCT     58
+                     | .||     
+FC12044_91407     22 C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      15/44 (34.1%)
+# Similarity:    15/44 (34.1%)
+# Gaps:          29/44 (65.9%)
+# Score: 61.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ------CAAGCAG----AAGACGGCATACGAGCTCTTCCGATCT     34
+                           |   |||    ||||| ||   ||       ||     
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGAC-GC---CG-------CC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+                         |||. |||  ||.||.||||| | .||     
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG--------     32
+                       ||     .||  |.||||.      ||.||        
+FC12044_91407      1 --TC-----TGC--TCCAGCT------CCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+                         |||. |||  ||.||.||||| | .||     
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 60
+# Identity:      19/60 (31.7%)
+# Similarity:    19/60 (31.7%)
+# Gaps:          37/60 (61.7%)
+# Score: 99.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCC--CTACACGACGCT     48
+                                           |||.|      |||  ||.||.||||| 
+FC12044_91407      1 ----------------------TCTGC------TCCAGCTCCAAGACGC-     21
+
+Illumina_Pair     49 CTTCCGATCT     58
+                     | .||     
+FC12044_91407     22 C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 66
+# Identity:      18/66 (27.3%)
+# Similarity:    18/66 (27.3%)
+# Gaps:          46/66 (69.7%)
+# Score: 92.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCT----GA-     45
+                                                |||  ||  |||.|||    || 
+FC12044_91407      1 ---------------------------TCT--GC--TCCAGCTCCAAGAC     19
+
+Illumina_Pair     46 ACCGCTCTTCCGATCT     61
+                     .|||| |         
+FC12044_91407     20 GCCGC-C---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 87.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTT-TCC--CTACACGACGCTCTTCCGATCT     33
+                         |||. |||  ||.||.||||| | .||     
+FC12044_91407      1 ----TCTGCTCCAGCTCCAAGACGC-C-GCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      18/42 (42.9%)
+# Similarity:    18/42 (42.9%)
+# Gaps:          22/42 (52.4%)
+# Score: 92.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCT----GA-ACCGCTCTTCCGATCT     37
+                        |||  ||  |||.|||    || .|||| |         
+FC12044_91407      1 ---TCT--GC--TCCAGCTCCAAGACGCCGC-C---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATC-G-TCGGACTGTAGAACTCTGA-AC------     26
+                       || | ||   |.|     |||..| ||      
+FC12044_91407      1 --TCTGCTC---CAG-----CTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      14/35 (40.0%)
+# Similarity:    14/35 (40.0%)
+# Gaps:          19/35 (54.3%)
+# Score: 72.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAG-TCC--GAC------     26
+                           ||.|    ||.||| |||  |||      
+FC12044_91407      1 ------TCTG----CTCCAGCTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+                           |   |||    ||||||  ||   |  
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCT---TG--------     21
+                     ||   |||  ||  |.|||   .|        
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+                           |   |||    ||||||  ||   |  
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+                                              ||.|    ||.||| |||.|     
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+
+Illumina_DpnI     45 ----     44
+                         
+FC12044_91407     22 CGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 77.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----     32
+                             ||.|    ||.||| |||  ||||  |    
+FC12044_91407      1 --------TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTG-T--AGAACTCTGA-AC------     21
+                         .||| |  ||  |||..| ||      
+FC12044_91407      1 ----TCTGCTCCAG--CTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      15/37 (40.5%)
+# Similarity:    15/37 (40.5%)
+# Gaps:          20/37 (54.1%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAG-TCC--GACATG-----     29
+                           ||.|    ||.||| |||  |||  |     
+FC12044_91407      1 ------TCTG----CTCCAGCTCCAAGAC--GCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          22/35 (62.9%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------CAAGCAG----AAGACG--GCATACGANN     23
+                           |   |||    ||||||  ||   |    
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          18/32 (56.2%)
+# Score: 51.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCT---TG--------     21
+                     ||   |||  ||  |.|||   .|        
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ------CAAGCAG----AAGACG--GCATACGA     21
+                           |   |||    ||||||  ||   |  
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+                                              ||.|    ||.||| |||.|     
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+
+Illumina_NlaI     45 ----     44
+                         
+FC12044_91407     22 CGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      15/40 (37.5%)
+# Similarity:    15/40 (37.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAG-TCC--GACATG-----     32
+                              ||.|    ||.||| |||  |||  |     
+FC12044_91407      1 ---------TCTG----CTCCAGCTCCAAGAC--GCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------CAAGCAG----AAGACG--GCATACGA     21
+                           |   |||    ||||||  ||   |  
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      16/33 (48.5%)
+# Similarity:    16/33 (48.5%)
+# Gaps:          15/33 (45.5%)
+# Score: 77.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAG-TCC--GACGATC----     26
+                       ||.|    ||.||| |||  ||||  |    
+FC12044_91407      1 --TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      12/32 (37.5%)
+# Similarity:    12/32 (37.5%)
+# Gaps:          17/32 (53.1%)
+# Score: 50.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCCGTCTTCTGCT---TGT-------     22
+                     ||   |||  ||  |.|||   .|.       
+FC12044_91407      1 TC---TGC--TC--CAGCTCCAAGACGCCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      13/33 (39.4%)
+# Similarity:    13/33 (39.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------CAAGCAG----AAGACG--GCATACGA     21
+                           |   |||    ||||||  ||   |  
+FC12044_91407      1 TCTGCTC---CAGCTCCAAGACGCCGC---C--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      12/54 (22.2%)
+# Similarity:    12/54 (22.2%)
+# Gaps:          39/54 (72.2%)
+# Score: 64.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAG-TCCGA-----     44
+                                              ||.|    ||.||| |||.|     
+FC12044_91407      1 -------------------------TCTG----CTCCAGCTCCAAGACGC     21
+
+Illumina_Smal     45 ----     44
+                         
+FC12044_91407     22 CGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_31_299
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          21/39 (53.8%)
+# Score: 77.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAG-TCC--GACGATC----     32
+                             ||.|    ||.||| |||  ||||  |    
+FC12044_91407      1 --------TCTG----CTCCAGCTCCAAGACG--CCGCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      12/37 (32.4%)
+# Similarity:    12/37 (32.4%)
+# Gaps:          16/37 (43.2%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAA----GAGCTCGTATGCCGTCTTCTGCTTG     33
+                      ..||||.    |.||..|.|.|.||           
+FC12044_91407      1 -TACGGAGCCGCGGGCGGGAAAGGCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+                                 |||. || ||    | ||..|.         
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 69.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGC     47
+                          |||||.| ||.|   ||.||                  |.|.|| 
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-     25
+
+Illumina_Geno     48 TCTTCCGATCT     58
+                                
+FC12044_91407     26 -----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:       9/46 (19.6%)
+# Similarity:     9/46 (19.6%)
+# Gaps:          33/46 (71.7%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----------CAAGCAG--AAGACGGCATACGAGCTCTTCCGATCT     34
+                               |..||.|  |||.||                     
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG---------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+                                 |||. || ||    | ||..|.         
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      17/32 (53.1%)
+# Similarity:    17/32 (53.1%)
+# Gaps:           7/32 (21.9%)
+# Score: 75.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG     32
+                      ..||||...||||    ||.||||.|.||  
+FC12044_91407      1 -TACGGAGCCGCGG----GCGGGAAAGGCG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+                                 |||. || ||    | ||..|.         
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      17/61 (27.9%)
+# Similarity:    17/61 (27.9%)
+# Gaps:          39/61 (63.9%)
+# Score: 69.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCAC---CGAGATCTACACTCTTTCCCTACACGACGC     47
+                          |||||.| ||.|   ||.||                  |.|.|| 
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGGA------------------AAGGCG-     25
+
+Illumina_Pair     48 TCTTCCGATCT     58
+                                
+FC12044_91407     26 -----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      17/64 (26.6%)
+# Similarity:    17/64 (26.6%)
+# Gaps:          42/64 (65.6%)
+# Score: 56.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAAC---     47
+                                     |||| ||.|   |.|||       ||.|.|.   
+FC12044_91407      1 ----------------TACG-GAGC---CGCGG-------GCGGGAAAGG     23
+
+Illumina_Pair     48 CGCTCTTCCGATCT     61
+                     ||            
+FC12044_91407     24 CG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 29.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGACGCTCTTC-CGATCT---------     33
+                                 |||. || ||    | ||..|.         
+FC12044_91407      1 ------------TACG-GA-GC----CGCGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      11/48 (22.9%)
+# Similarity:    11/48 (22.9%)
+# Gaps:          34/48 (70.8%)
+# Score: 45.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTCTT---C--------CGATCT     37
+                                    |.|.||.||||       |        ||    
+FC12044_91407      1 ---------------TACGGAGCCGC----GGGCGGGAAAGGCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      13/35 (37.1%)
+# Similarity:    13/35 (37.1%)
+# Gaps:          19/35 (54.3%)
+# Score: 35.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----GAT-CGTCGGACTGTAGAACTCTGAA---C-     26
+                         ||. || |||.|.|         |||   | 
+FC12044_91407      1 TACGGAGCCG-CGGGCGG---------GAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       9/40 (22.5%)
+# Similarity:     9/40 (22.5%)
+# Gaps:          29/40 (72.5%)
+# Score: 44.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTCCGAC--------------     26
+                          |.|.|||         ||| |              
+FC12044_91407      1 -----TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+                               |..||.|  |||.||        
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -TCGTATGCCGTCTTC-TGCTTG---------     21
+                      .||.| ||||    | .||  |         
+FC12044_91407      1 TACGGA-GCCG----CGGGC--GGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+                               |..||.|  |||.||        
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                          |||||.| ||.|.|.|.||   |.||       |  || 
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      11/42 (26.2%)
+# Similarity:    11/42 (26.2%)
+# Gaps:          27/42 (64.3%)
+# Score: 52.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGTCCGACGATC----------     32
+                            |.|.|||         ||| ||..|          
+FC12044_91407      1 -------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGGA-CTGTAGAACTCTGAAC----------     21
+                      .|||| |       |.| |..|          
+FC12044_91407      1 TACGGAGC-------CGC-GGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      10/40 (25.0%)
+# Similarity:    10/40 (25.0%)
+# Gaps:          26/40 (65.0%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-----------     29
+                          |.|.|||         ||| |..|           
+FC12044_91407      1 -----TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          22/35 (62.9%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------CAAGCAG--AAGACGGCATACGANN     23
+                               |..||.|  |||.||          
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGTATGCCGTCTTC-TGCTTG---------     21
+                      .||.| ||||    | .||  |         
+FC12044_91407      1 TACGGA-GCCG----CGGGC--GGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------CAAGCAG--AAGACGGCATACGA     21
+                               |..||.|  |||.||        
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                          |||||.| ||.|.|.|.||   |.||       |  || 
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      10/43 (23.3%)
+# Similarity:    10/43 (23.3%)
+# Gaps:          29/43 (67.4%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTCAGAGTTCTACAGTCCGACATG-----------     32
+                             |.|.|||         ||| |..|           
+FC12044_91407      1 --------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------CAAGCAG--AAGACGGCATACGA     21
+                               |..||.|  |||.||        
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 52.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGACGATC----------     26
+                      |.|.|||         ||| ||..|          
+FC12044_91407      1 -TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      11/30 (36.7%)
+# Similarity:    11/30 (36.7%)
+# Gaps:          13/30 (43.3%)
+# Score: 28.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -TCGTATGCCGTCTTC-TGCTTGT------     22
+                      .||.| ||||    | .||..|.      
+FC12044_91407      1 TACGGA-GCCG----CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:       9/33 (27.3%)
+# Similarity:     9/33 (27.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 47.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------CAAGCAG--AAGACGGCATACGA     21
+                               |..||.|  |||.||        
+FC12044_91407      1 TACGGAGCCGCGGGCGGGAAAGGCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      19/44 (43.2%)
+# Similarity:    19/44 (43.2%)
+# Gaps:          19/44 (43.2%)
+# Score: 71.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA     44
+                          |||||.| ||.|.|.|.||   |.||       |  || 
+FC12044_91407      1 -----TACGGAG-CCGCGGGCGGG---AAAG-------G--CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_553_135
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      11/42 (26.2%)
+# Similarity:    11/42 (26.2%)
+# Gaps:          27/42 (64.3%)
+# Score: 52.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGTCCGACGATC----------     32
+                            |.|.|||         ||| ||..|          
+FC12044_91407      1 -------TACGGAG---------CCG-CGGGCGGGAAAGGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      14/43 (32.6%)
+# Similarity:    14/43 (32.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --------GATCGGAAGAGCTCG--TATGCCGTCTTCTGCTTG     33
+                             |.||  |||    ||  ||| || |          
+FC12044_91407      1 CCTCCCAGGTTC--AAG----CGATTAT-CC-T----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+                        | |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      18/64 (28.1%)
+# Similarity:    18/64 (28.1%)
+# Gaps:          45/64 (70.3%)
+# Score: 73.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TACA--CGAC     45
+                                     ||               ||||   |.||  ||| 
+FC12044_91407      1 ----------------CC---------------TCCCAGGTTCAAGCGA-     18
+
+Illumina_Geno     46 GCTCTTCCGAT-CT     58
+                         ||   || ||
+FC12044_91407     19 ----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      13/46 (28.3%)
+# Similarity:    13/46 (28.3%)
+# Gaps:          33/46 (71.7%)
+# Score: 61.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTC-----TTC---CGAT----CT     34
+                                       |   |||     |||   ||||    ||
+FC12044_91407      1 ------------------C---CTCCCAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+                        | |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      14/40 (35.0%)
+# Similarity:    14/40 (35.0%)
+# Gaps:          23/40 (57.5%)
+# Score: 55.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGC------GGTTC-AGCAGGAATG-CCGAG     32
+                                |      ||||| |||  ||.|. ||.  
+FC12044_91407      1 -----------CCTCCCAGGTTCAAGC--GATTATCCT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+                        | |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      18/64 (28.1%)
+# Similarity:    18/64 (28.1%)
+# Gaps:          45/64 (70.3%)
+# Score: 73.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCC---TACA--CGAC     45
+                                     ||               ||||   |.||  ||| 
+FC12044_91407      1 ----------------CC---------------TCCCAGGTTCAAGCGA-     18
+
+Illumina_Pair     46 GCTCTTCCGAT-CT     58
+                         ||   || ||
+FC12044_91407     19 ----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      15/71 (21.1%)
+# Similarity:    15/71 (21.1%)
+# Gaps:          56/71 (78.9%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                                                          |||      ||  
+FC12044_91407      1 -------------------------------------CCT------CC--      5
+
+Illumina_Pair     51 TC---TTC---CGAT----CT     61
+                      |   |||   ||||    ||
+FC12044_91407      6 -CAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      18/39 (46.2%)
+# Similarity:    18/39 (46.2%)
+# Gaps:          20/39 (51.3%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCC---TACA--CGACGCTCTTCCGAT-CT     33
+                        | |  ||||   |.||  |||     ||   || ||
+FC12044_91407      1 ---C-C--TCCCAGGTTCAAGCGA-----TT---ATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      15/47 (31.9%)
+# Similarity:    15/47 (31.9%)
+# Gaps:          32/47 (68.1%)
+# Score: 70.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGCTC---TTC---CGAT----CT     37
+                                  |||      ||   |   |||   ||||    ||
+FC12044_91407      1 -------------CCT------CC---CAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:       7/42 (16.7%)
+# Similarity:     7/42 (16.7%)
+# Gaps:          33/42 (78.6%)
+# Score: 32.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------------GATCGTCGGACTGTAGAACTCTGAAC     26
+                                     |||..||   ||              
+FC12044_91407      1 CCTCCCAGGTTCAAGCGATTATC---CT--------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      16/31 (51.6%)
+# Similarity:    16/31 (51.6%)
+# Gaps:          11/31 (35.5%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----ACAGGTTC-AGAGTTCTACAGTCCGAC     26
+                         .||||||| ||.|.| ||   |||.  
+FC12044_91407      1 CCTCCCAGGTTCAAGCGAT-TA---TCCT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+                         |   ||      ||  ||..|||       
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGCCGTC-----TTC-TGC--TTG----     21
+                            || ||     ||| .||  ||.    
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+                         |   ||      ||  ||..|||       
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+                                  ||.||  ||||||| ||.|.| ||   |||. 
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--     32
+                         |  |||||||| ||          |||..|||  
+FC12044_91407      1 CCTCC--CAGGTTCA-AG----------CGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:       8/31 (25.8%)
+# Similarity:     8/31 (25.8%)
+# Gaps:          16/31 (51.6%)
+# Score: 31.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------TCGGACTGTAGAACTCTGAAC     21
+                               ||...| |...|.| ||    
+FC12044_91407      1 CCTCCCAGGTTCAAGC-GATTATC-CT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          14/34 (41.2%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----ACAGGTTC-AGAGTTCTACAGTCCGACATG     29
+                         .||||||| ||.|.| ||   |||    | 
+FC12044_91407      1 CCTCCCAGGTTCAAGCGAT-TA---TCC----T-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       7/34 (20.6%)
+# Similarity:     7/34 (20.6%)
+# Gaps:          20/34 (58.8%)
+# Score: 37.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----------CAAGCAGAAGACGGCATACGANN     23
+                                |||||......|  |.       
+FC12044_91407      1 CCTCCCAGGTTCAAGCGATTATC--CT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          20/33 (60.6%)
+# Score: 45.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGCCGTC-----TTC-TGC--TTG----     21
+                            || ||     ||| .||  ||.    
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+                         |   ||      ||  ||..|||       
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+                                  ||.||  ||||||| ||.|.| ||   |||. 
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      19/36 (52.8%)
+# Similarity:    19/36 (52.8%)
+# Gaps:          15/36 (41.7%)
+# Score: 84.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---CCGACAGGTTC-AGAGTTCTACAGTCCGACATG     32
+                        ||  ||||||| ||.|.| ||   |||    | 
+FC12044_91407      1 CCTCC--CAGGTTCAAGCGAT-TA---TCC----T-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+                         |   ||      ||  ||..|||       
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 54.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --------GTTCAGAGTTCTACAGTCCGACGATC--     26
+                             ||||| ||          |||..|||  
+FC12044_91407      1 CCTCCCAGGTTCA-AG----------CGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          19/33 (57.6%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCCGTC-----TTC-TGC--TTGT---     22
+                            || ||     ||| .||  ||.|   
+FC12044_91407      1 -------CC-TCCCAGGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CAAGCAGAAGACGG--CATACGA-------     21
+                         |   ||      ||  ||..|||       
+FC12044_91407      1 CCTCC---CA------GGTTCAAGCGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 101.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTTCTACAGTCCGA     44
+                                  ||.||  ||||||| ||.|.| ||   |||. 
+FC12044_91407      1 -------------CCTCC--CAGGTTCAAGCGAT-TA---TCCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_139_74
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      17/38 (44.7%)
+# Similarity:    17/38 (44.7%)
+# Gaps:          19/38 (50.0%)
+# Score: 76.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----CGACAGGTTCAGAGTTCTACAGTCCGACGATC--     32
+                         |  |||||||| ||          |||..|||  
+FC12044_91407      1 CCTCC--CAGGTTCA-AG----------CGATTATCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGT-ATGCCGTCTTCTGCTTG---------     33
+                                   || |||.||.|  |.||  |         
+FC12044_91407      1 --------------GTCATGGCGGC--CCGC--GCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+                      .||     |     ||| .|.||    .||            
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --AATGATACGGCGACCAC-CGAGATCTACACTCTTTCCCTACACGA-CG     46
+                       .|||  .||||  ||.| ||.|                     || ||
+FC12044_91407      1 GTCATG--GCGGC--CCGCGCGGG---------------------GAGCG     25
+
+Illumina_Geno     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          29/44 (65.9%)
+# Score: 46.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 --CAAGCAGAAGACGGCATAC--------GAGCTCTTCCGATCT     34
+                       |      |.|.||||   |        ||||.          
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+                      .||     |     ||| .|.||    .||            
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTC---AGCAGGAATGCCGAG     32
+                      .||  |.| ||||  |   .||.||.| | ||  
+FC12044_91407      1 -GTC--ATG-GCGG--CCCGCGCGGGGA-G-CG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+                      .||     |     ||| .|.||    .||            
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          41/62 (66.1%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 --AATGATACGGCGACCAC-CGAGATCTACACTCTTTCCCTACACGA-CG     46
+                       .|||  .||||  ||.| ||.|                     || ||
+FC12044_91407      1 GTCATG--GCGGC--CCGCGCGGG---------------------GAGCG     25
+
+Illumina_Pair     47 CTCTTCCGATCT     58
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 70
+# Identity:      14/70 (20.0%)
+# Similarity:    14/70 (20.0%)
+# Gaps:          54/70 (77.1%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCT---CGGCATTCCTGCTGAAC     47
+                                               |||.   ||||            |
+FC12044_91407      1 --------------------------GTCATGGCGGC------------C     12
+
+Illumina_Pair     48 CGCTCTTC------CGATCT     61
+                     |||   .|      ||    
+FC12044_91407     13 CGC---GCGGGGAGCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          28/43 (65.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -ACACTCTTT-----CCCTACACG----ACGCTCTTCCGATCT     33
+                      .||     |     ||| .|.||    .||            
+FC12044_91407      1 GTCA-----TGGCGGCCC-GCGCGGGGAGCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      14/46 (30.4%)
+# Similarity:    14/46 (30.4%)
+# Gaps:          30/46 (65.2%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCT---CGGCATTCCTGCTGAACCGCTCTTC------CGATCT     37
+                       |||.   ||||            ||||   .|      ||    
+FC12044_91407      1 --GTCATGGCGGC------------CCGC---GCGGGGAGCG----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          15/33 (45.5%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGT--CGGACTGTAGAACTC----TGAAC-     26
+                      .||.|  |||.|       |.|    .||.| 
+FC12044_91407      1 -GTCATGGCGGCC-------CGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTACAGTCCGAC----------     26
+                        |  |||..|     |.|.||| |          
+FC12044_91407      1 ---G--TCATGG-----CGGCCCG-CGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+                       |      |.|.||||   |        ||   
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -TCGTATGCCGTCTTCTGCTTG---------     21
+                      ||  |||.||.|  |.||  |         
+FC12044_91407      1 GTC--ATGGCGGC--CCGC--GCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+                       |      |.|.||||   |        ||   
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+                      .|.||  ||||.|| | || |.||    |||          || 
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 45.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACA-GGTTCAGAGTTCTACAGTCCGACGATC--------     32
+                      |.|| ||            |.|.||| ||  |        
+FC12044_91407      1 -GTCATGG------------CGGCCCG-CG--CGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 26.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----T--CGGACTGTAGAACTC----TGAAC-     21
+                         |  |||.|       |.|    .||.| 
+FC12044_91407      1 GTCATGGCGGCC-------CGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:       5/48 (10.4%)
+# Similarity:     5/48 (10.4%)
+# Gaps:          42/48 (87.5%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-------------------     29
+                                            |.||||                   
+FC12044_91407      1 -----------------------GTCATGGCGGCCCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:       9/34 (26.5%)
+# Similarity:     9/34 (26.5%)
+# Gaps:          20/34 (58.8%)
+# Score: 35.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --CAAGCAGAAGACGGC---------ATACGANN     23
+                       |      |.|.||||         ...||   
+FC12044_91407      1 GTC------ATGGCGGCCCGCGCGGGGAGCG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          16/31 (51.6%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGTATGCCGTCTTCTGCTTG---------     21
+                      ||  |||.||.|  |.||  |         
+FC12044_91407      1 GTC--ATGGCGGC--CCGC--GCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+                       |      |.|.||||   |        ||   
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+                      .|.||  ||||.|| | || |.||    |||          || 
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          31/44 (70.5%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----------CCG-ACAGGTTCAGAGTTCTACAGTCCGACATG     32
+                                ||| .|.||    |||          ||     
+FC12044_91407      1 GTCATGGCGGCCCGCGCGGG----GAG----------CG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+                       |      |.|.||||   |        ||   
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      13/34 (38.2%)
+# Similarity:    13/34 (38.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTACAGTCCGACGATC--------     26
+                     | |||..|     |.|.||| ||  |        
+FC12044_91407      1 G-TCATGG-----CGGCCCG-CG--CGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      12/34 (35.3%)
+# Similarity:    12/34 (35.3%)
+# Gaps:          21/34 (61.8%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -TCGTATG-----CCGTCTTC------TGCTTGT     22
+                      ||  |||     |||    |      .||  | 
+FC12044_91407      1 GTC--ATGGCGGCCCG----CGCGGGGAGC--G-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 36.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --CAAGCAGAAGACGGCATAC--------GA---     21
+                       |      |.|.||||   |        ||   
+FC12044_91407      1 GTC------ATGGCGGC---CCGCGCGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      20/45 (44.4%)
+# Similarity:    20/45 (44.4%)
+# Gaps:          21/45 (46.7%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCAC-CGACAGGTTCAGAGTTCTACAGTCCGA     44
+                      .|.||  ||||.|| | || |.||    |||          || 
+FC12044_91407      1 -GTCAT--GGCGGCC-CGCG-CGGG----GAG----------CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_108_33
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 45.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACA-GGTTCAGAGTTCTACAGTCCGACGATC--------     32
+                      |.|| ||            |.|.||| ||  |        
+FC12044_91407      1 -GTCATGG------------CGGCCCG-CG--CGGGGAGCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          30/44 (68.2%)
+# Score: 57.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -------GATC----GGAAGAGCTCGTATGCCGTCTTCTGCTTG     33
+                            |.||    .|||||| |||                  
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAG-TCG------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+                       ||       ||||.      |.||     ||            
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGA-GATCTACACTCTTTCCCTACACGA-----     44
+                                    ||.|. |.|      ||||.      |.||     
+FC12044_91407      1 ---------------ACAGTGGGT------TCTTA------AAGAAGAGT     23
+
+Illumina_Geno     45 CGCTCTTCCGATCT     58
+                     ||            
+FC12044_91407     24 CG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      11/48 (22.9%)
+# Similarity:    11/48 (22.9%)
+# Gaps:          37/48 (77.1%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ----------C--AAGCAGAAGA--CGGCATACGAGCTCTTCCGATCT     34
+                               |  ||  ||||||  ||                     
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG---------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+                       ||       ||||.      |.||     ||            
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      17/36 (47.2%)
+# Similarity:    17/36 (47.2%)
+# Gaps:          15/36 (41.7%)
+# Score: 58.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTC----AGCAGGAATGCCGAG     32
+                       .|   ||.| |||||    || |.||.|  ||  
+FC12044_91407      1 --AC---AGTG-GGTTCTTAAAG-AAGAGT--CG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+                       ||       ||||.      |.||     ||            
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 64
+# Identity:      14/64 (21.9%)
+# Similarity:    14/64 (21.9%)
+# Gaps:          45/64 (70.3%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGA-GATCTACACTCTTTCCCTACACGA-----     44
+                                    ||.|. |.|      ||||.      |.||     
+FC12044_91407      1 ---------------ACAGTGGGT------TCTTA------AAGAAGAGT     23
+
+Illumina_Pair     45 CGCTCTTCCGATCT     58
+                     ||            
+FC12044_91407     24 CG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      14/68 (20.6%)
+# Similarity:    14/68 (20.6%)
+# Gaps:          50/68 (73.5%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGG---CATACGAGA----TCGGTCTCGGCATTCCTGCT     43
+                        .|||.    ||   |.|| .|||    |||                 
+FC12044_91407      1 ---ACAGT----GGGTTCTTA-AAGAAGAGTCG-----------------     25
+
+Illumina_Pair     44 GAACCGCTCTTCCGATCT     61
+                                       
+FC12044_91407     26 ------------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      11/45 (24.4%)
+# Similarity:    11/45 (24.4%)
+# Gaps:          32/45 (71.1%)
+# Score: 36.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACAC-------TCTTTCCCTACACGA-----CGCTCTTCCGATCT     33
+                       ||       ||||.      |.||     ||            
+FC12044_91407      1 --ACAGTGGGTTCTTA------AAGAAGAGTCG------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      16/39 (41.0%)
+# Similarity:    16/39 (41.0%)
+# Gaps:          16/39 (41.0%)
+# Score: 40.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -CGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGA-TCT     37
+                      |.||   || .|||.|...|||          || ||.
+FC12044_91407      1 ACAGT---GG-GTTCTTAAAGAA----------GAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      12/35 (34.3%)
+# Similarity:    12/35 (34.3%)
+# Gaps:          19/35 (54.3%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCT----GAA----C-     26
+                              ||.||.|.. |||    |||    | 
+FC12044_91407      1 ---------ACAGTGGGT-TCTTAAAGAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      15/36 (41.7%)
+# Similarity:    15/36 (41.7%)
+# Gaps:          21/36 (58.3%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACA---GGTTC-------AGAGTTCTACAGTCCGAC     26
+                     |||   |||||       |||||         ||  
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGT---------CG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+                               |  ||  ||||||  ||        
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       7/36 (19.4%)
+# Similarity:     7/36 (19.4%)
+# Gaps:          26/36 (72.2%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---------TCGTA------TGCCGTCTTCTGCTTG     21
+                              ||.||      .|.||           
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGTCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+                               |  ||  ||||||  ||        
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+                                        |||   |||||       |||||        
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+
+Illumina_DpnI     41 CCGA     44
+                      || 
+FC12044_91407     24 -CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTCAGAGTTCTACAGTCCGACGA-TC-     32
+                       ||||    .|.|||||..|.   ||.|| || 
+FC12044_91407      1 --ACAG----TGGGTTCTTAAA---GAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 48.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACTGTAGAACTCT----GAA----C-     21
+                         ||.||.|.. |||    |||    | 
+FC12044_91407      1 ----ACAGTGGGT-TCTTAAAGAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          24/39 (61.5%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACA---GGTTC-------AGAGTTCTACAGTCCGACATG     29
+                     |||   |||||       |||||         ||     
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGT---------CG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      11/37 (29.7%)
+# Similarity:    11/37 (29.7%)
+# Gaps:          26/37 (70.3%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------C--AAGCAGAAGA--CGGCATACGANN     23
+                               |  ||  ||||||  ||          
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:       7/36 (19.4%)
+# Similarity:     7/36 (19.4%)
+# Gaps:          26/36 (72.2%)
+# Score: 24.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---------TCGTA------TGCCGTCTTCTGCTTG     21
+                              ||.||      .|.||           
+FC12044_91407      1 ACAGTGGGTTCTTAAAGAAGAGTCG-----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+                               |  ||  ||||||  ||        
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+                                        |||   |||||       |||||        
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+
+Illumina_NlaI     41 CCGA     44
+                      || 
+FC12044_91407     24 -CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      15/42 (35.7%)
+# Similarity:    15/42 (35.7%)
+# Gaps:          27/42 (64.3%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACA---GGTTC-------AGAGTTCTACAGTCCGACATG     32
+                        |||   |||||       |||||         ||     
+FC12044_91407      1 ---ACAGTGGGTTCTTAAAGAAGAGT---------CG-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+                               |  ||  ||||||  ||        
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      15/30 (50.0%)
+# Similarity:    15/30 (50.0%)
+# Gaps:           9/30 (30.0%)
+# Score: 57.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGA--GTTCTACAGTCCGACGA-TC-     26
+                       .|||.  |||||..|.   ||.|| || 
+FC12044_91407      1 --ACAGTGGGTTCTTAAA---GAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:       7/38 (18.4%)
+# Similarity:     7/38 (18.4%)
+# Gaps:          29/38 (76.3%)
+# Score: 25.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCCGTCTTCTG------CTT--------GT--     22
+                                  .|.|      |||        ||  
+FC12044_91407      1 -------------ACAGTGGGTTCTTAAAGAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      11/35 (31.4%)
+# Similarity:    11/35 (31.4%)
+# Gaps:          24/35 (68.6%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ----------C--AAGCAGAAGA--CGGCATACGA     21
+                               |  ||  ||||||  ||        
+FC12044_91407      1 ACAGTGGGTTCTTAA--AGAAGAGTCG--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 54
+# Identity:      15/54 (27.8%)
+# Similarity:    15/54 (27.8%)
+# Gaps:          39/54 (72.2%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACA---GGTTC-------AGAGTTCTACAGT     40
+                                        |||   |||||       |||||        
+FC12044_91407      1 -------------------ACAGTGGGTTCTTAAAGAAGAGT--------     23
+
+Illumina_Smal     41 CCGA     44
+                      || 
+FC12044_91407     24 -CG-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_980_965
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 67.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTCAGAGTTCTACAGTCCGACGA-TC-     32
+                       ||||    .|.|||||..|.   ||.|| || 
+FC12044_91407      1 --ACAG----TGGGTTCTTAAA---GAAGAGTCG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          16/37 (43.2%)
+# Score: 77.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTATGC-CGTCTT--CTGCTTG-     33
+                      |.||  ||.|       || ||.|||  |  |||| 
+FC12044_91407      1 -AACG--AGGG-------GCGCGACTTGAC--CTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+                                  | ||||    ||| .|||  ||.||   
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          41/62 (66.1%)
+# Score: 65.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATAC----GGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+                          .||    ||||     |||          |||         ||| 
+FC12044_91407      1 -----AACGAGGGGCG-----CGA----------CTT---------GAC-     20
+
+Illumina_Geno     47 CTCTTCCGATCT     58
+                       |||  |.   
+FC12044_91407     21 --CTT--GG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      18/37 (48.6%)
+# Similarity:    18/37 (48.6%)
+# Gaps:          15/37 (40.5%)
+# Score: 64.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT---     34
+                       |.| ||.|  |||  .|||   |||  ||.||   
+FC12044_91407      1 --AAC-GAGG--GGC--GCGA---CTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+                                  | ||||    ||| .|||  ||.||   
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      15/33 (45.5%)
+# Similarity:    15/33 (45.5%)
+# Gaps:           9/33 (27.3%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG-     32
+                      |.| ||.|.|||   |..|..||   ||..| 
+FC12044_91407      1 -AAC-GAGGGGCG---CGACTTGA---CCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+                                  | ||||    ||| .|||  ||.||   
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      19/62 (30.6%)
+# Similarity:    19/62 (30.6%)
+# Gaps:          41/62 (66.1%)
+# Score: 65.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATAC----GGCGACCACCGAGATCTACACTCTTTCCCTACACGACG     46
+                          .||    ||||     |||          |||         ||| 
+FC12044_91407      1 -----AACGAGGGGCG-----CGA----------CTT---------GAC-     20
+
+Illumina_Pair     47 CTCTTCCGATCT     58
+                       |||  |.   
+FC12044_91407     21 --CTT--GG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 62
+# Identity:      17/62 (27.4%)
+# Similarity:    17/62 (27.4%)
+# Gaps:          38/62 (61.3%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCAT-TCCTGCTGAACCG     49
+                                     .|||||   ||.|.||.|.| .|||  ||.    
+FC12044_91407      1 ----------------AACGAG---GGGCGCGACTTGACCT--TGG----     25
+
+Illumina_Pair     50 CTCTTCCGATCT     61
+                                 
+FC12044_91407     26 ------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      15/41 (36.6%)
+# Similarity:    15/41 (36.6%)
+# Gaps:          24/41 (58.5%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACACGA----CGC-TCTTCCGATCT---     33
+                                  | ||||    ||| .|||  ||.||   
+FC12044_91407      1 -------------A-ACGAGGGGCGCGACTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      13/47 (27.7%)
+# Similarity:    13/47 (27.7%)
+# Gaps:          32/47 (68.1%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAAC------CGC-TCTTCCGATCT---     37
+                                         |||      ||| .|||  ||.||   
+FC12044_91407      1 --------------------AACGAGGGGCGCGACTT--GACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:          11/31 (35.5%)
+# Score: 56.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGT----CG-GACTGTAGAACTCTGAAC     26
+                      |.||.    || |||  |.||.|| ||.  
+FC12044_91407      1 -AACGAGGGGCGCGAC--TTGACCT-TGG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      11/39 (28.2%)
+# Similarity:    11/39 (28.2%)
+# Gaps:          27/39 (69.2%)
+# Score: 39.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -AC-AGGTTCAGAGTTCTACAGTC-CGAC----------     26
+                      || |||              |.| ||||          
+FC12044_91407      1 AACGAGG--------------GGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA-----------     21
+                       |.| ||.|  |||  .|||           
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -TCGT-ATGC-CGTCTT--CTGCTTG-     21
+                      .||. ..|| ||.|||  |  |||| 
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA-----------     21
+                       |.| ||.|  |||  .|||           
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+                          .||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+
+Illumina_DpnI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          25/41 (61.0%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --CGACAGGTTCAGAGTTCTACAGTC-CGAC--GATC----     32
+                       ||  |||              |.| ||||  ||.|    
+FC12044_91407      1 AACG--AGG--------------GGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      12/30 (40.0%)
+# Similarity:    12/30 (40.0%)
+# Gaps:          14/30 (46.7%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCG--------GACTGTAGAACTCTGAAC     21
+                      .||        |||  |.||.|| ||.  
+FC12044_91407      1 AACGAGGGGCGCGAC--TTGACCT-TGG--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      13/39 (33.3%)
+# Similarity:    13/39 (33.3%)
+# Gaps:          24/39 (61.5%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -AC-AGGTTCAGAGTTCTACAGTC-CGACATG-------     29
+                      || |||              |.| ||||.||       
+FC12044_91407      1 AACGAGG--------------GGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          14/31 (45.2%)
+# Score: 37.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAG---ACGGCAT-AC----GANN     23
+                       |.| ||.|   .||.|.| ||    |   
+FC12044_91407      1 --AAC-GAGGGGCGCGACTTGACCTTGG---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           8/27 (29.6%)
+# Score: 60.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGT-ATGC-CGTCTT--CTGCTTG-     21
+                      .||. ..|| ||.|||  |  |||| 
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA-----------     21
+                       |.| ||.|  |||  .|||           
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+                          .||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+
+Illumina_NlaI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      13/41 (31.7%)
+# Similarity:    13/41 (31.7%)
+# Gaps:          25/41 (61.0%)
+# Score: 49.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGAC-AGGTTCAGAGTTCTACAGTC-CGACATG-------     32
+                       .|| |||              |.| ||||.||       
+FC12044_91407      1 --AACGAGG--------------GGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA-----------     21
+                       |.| ||.|  |||  .|||           
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      11/36 (30.6%)
+# Similarity:    11/36 (30.6%)
+# Gaps:          21/36 (58.3%)
+# Score: 37.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTAC---AGTC-CGAC--GATC----     26
+                                .||   .|.| ||||  ||.|    
+FC12044_91407      1 -----------AACGAGGGGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 27
+# Identity:      14/27 (51.9%)
+# Similarity:    14/27 (51.9%)
+# Gaps:           7/27 (25.9%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -TCGT-ATGC-CGTCTT--CTGCTTGT     22
+                      .||. ..|| ||.|||  |  ||||.
+FC12044_91407      1 AACGAGGGGCGCGACTTGAC--CTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 41.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA-----------     21
+                       |.| ||.|  |||  .|||           
+FC12044_91407      1 --AAC-GAGG--GGC--GCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      16/51 (31.4%)
+# Similarity:    16/51 (31.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATAC----GGCGACCACCGACAGGTTCAGAGTTCTACAGTCC---G     43
+                          .||    ||||     ||||   ||            |.||   |
+FC12044_91407      1 -----AACGAGGGGCG-----CGAC---TT------------GACCTTGG     25
+
+Illumina_Smal     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_981_857
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      14/41 (34.1%)
+# Similarity:    14/41 (34.1%)
+# Gaps:          25/41 (61.0%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --CGACAGGTTCAGAGTTCTACAGTC-CGAC--GATC----     32
+                       ||  |||              |.| ||||  ||.|    
+FC12044_91407      1 AACG--AGG--------------GGCGCGACTTGACCTTGG     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      11/44 (25.0%)
+# Similarity:    11/44 (25.0%)
+# Gaps:          30/44 (68.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCTCGTAT---GCCGTCTTCTG-----CTTG---     33
+                                    |.|   .||  |  |.|     ||||   
+FC12044_91407      1 ---------------TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+                           |||||| ||.|   ||.|| |||  |..| 
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GACGC     47
+                                                    |||||| ||.|   ||.||
+FC12044_91407      1 -------------------------------TTTCCC-ACCCCAGGAAGC     18
+
+Illumina_Geno     48 TCTTCCGATCT     58
+                      |||  |..| 
+FC12044_91407     19 -CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          27/43 (62.8%)
+# Score: 48.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ---------CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT     34
+                              |   |||.|           ||| |||  |..| 
+FC12044_91407      1 TTTCCCACCC---CAGGA-----------AGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+                           |||||| ||.|   ||.|| |||  |..| 
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTT-------CAGCAGGAATGCCGAG---     32
+                                   ||       |  |||||| |||..|   
+FC12044_91407      1 --------------TTTCCCACCC--CAGGAA-GCCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+                           |||||| ||.|   ||.|| |||  |..| 
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      18/61 (29.5%)
+# Similarity:    18/61 (29.5%)
+# Gaps:          39/61 (63.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC---GACGC     47
+                                                    |||||| ||.|   ||.||
+FC12044_91407      1 -------------------------------TTTCCC-ACCCCAGGAAGC     18
+
+Illumina_Pair     48 TCTTCCGATCT     58
+                      |||  |..| 
+FC12044_91407     19 -CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 68
+# Identity:      15/68 (22.1%)
+# Similarity:    15/68 (22.1%)
+# Gaps:          50/68 (73.5%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACC--     48
+                                                       .||||  |   |||  
+FC12044_91407      1 ----------------------------------TTTCC--C---ACCCC     11
+
+Illumina_Pair     49 -----GCTCTTCCGATCT     61
+                          || |||  |..| 
+FC12044_91407     12 AGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      18/36 (50.0%)
+# Similarity:    18/36 (50.0%)
+# Gaps:          14/36 (38.9%)
+# Score: 88.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC---GACGCTCTTCCGATCT     33
+                           |||||| ||.|   ||.|| |||  |..| 
+FC12044_91407      1 ------TTTCCC-ACCCCAGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      15/44 (34.1%)
+# Similarity:    15/44 (34.1%)
+# Gaps:          26/44 (59.1%)
+# Score: 67.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACC-------GCTCTTCCGATCT     37
+                               .||||  |   |||       || |||  |..| 
+FC12044_91407      1 ----------TTTCC--C---ACCCCAGGAAGC-CTT--GGAC-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGT--------CGGACTGTAGAA--CTCTGAAC     26
+                          |        |   |.|  |||  || ||.||
+FC12044_91407      1 -----TTTCCCACCC---CAG--GAAGCCT-TGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTCAGAGTTCTAC-------AGTCC---GAC     26
+                         .|||      |.||       || ||   |||
+FC12044_91407      1 ----TTTC------CCACCCCAGGAAG-CCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+                              |   |||.|..|  |.|  ||  
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTAT---GCCGTCTTCTG-----CTTG---     21
+                        |.|   .||  |  |.|     ||||   
+FC12044_91407      1 ---TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+                              |   |||.|..|  |.|  ||  
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+                         .|.|     ||||| .||||.. |      ||   ||       
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          31/44 (70.5%)
+# Score: 44.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---------CGACAGGTTCAGAGTTCTACAGTCC---GACGATC     32
+                              |  ||||.  ||           ||   |||    
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      12/33 (36.4%)
+# Similarity:    12/33 (36.4%)
+# Gaps:          20/33 (60.6%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --TC--------GGA--CTGTAGAACTCTGAAC     21
+                       ||        |||  |       || ||.||
+FC12044_91407      1 TTTCCCACCCCAGGAAGC-------CT-TGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      13/38 (34.2%)
+# Similarity:    13/38 (34.2%)
+# Gaps:          22/38 (57.9%)
+# Score: 44.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCC---GA---CATG---     29
+                         .|||      |.||   ||   ||   |.||   
+FC12044_91407      1 ----TTTC------CCAC---CCCAGGAAGCCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          20/34 (58.8%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---------CAAGCAGAAGACGGCAT--ACGANN     23
+                              |   |||.|..|  |.|  ||    
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTAT---GCCGTCTTCTG-----CTTG---     21
+                        |.|   .||  |  |.|     ||||   
+FC12044_91407      1 ---TTTCCCACC--C--CAGGAAGCCTTGGAC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+                              |   |||.|..|  |.|  ||  
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+                         .|.|     ||||| .||||.. |      ||   ||       
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      13/43 (30.2%)
+# Similarity:    13/43 (30.2%)
+# Gaps:          29/43 (67.4%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --------CCGACAGGTTCAGAGTTCTACAGTCC---GACATG     32
+                             ||  ||||.  ||           ||   |||   
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+                              |   |||.|..|  |.|  ||  
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      13/36 (36.1%)
+# Similarity:    13/36 (36.1%)
+# Gaps:          21/36 (58.3%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAGAGTTCTAC-------AGTCC---GACGATC     26
+                     .|||      |.||       || ||   |||    
+FC12044_91407      1 TTTC------CCACCCCAGGAAG-CCTTGGAC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       9/35 (25.7%)
+# Similarity:     9/35 (25.7%)
+# Gaps:          23/35 (65.7%)
+# Score: 38.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --TC--------GTATGCC---GTCTTCTGCTTGT     22
+                       ||        |.|.|||   |.|          
+FC12044_91407      1 TTTCCCACCCCAGGAAGCCTTGGAC----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      10/32 (31.2%)
+# Similarity:    10/32 (31.2%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---------CAAGCAGAAGACGGCAT--ACGA     21
+                              |   |||.|..|  |.|  ||  
+FC12044_91407      1 TTTCCCACCC---CAGGAAGC--CTTGGAC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 48
+# Identity:      16/48 (33.3%)
+# Similarity:    16/48 (33.3%)
+# Gaps:          27/48 (56.2%)
+# Score: 68.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTT-CAGAGTTCT---ACAGTCCGA     44
+                         .|.|     ||||| .||||.. |      ||   ||       
+FC12044_91407      1 ----TTTC-----CCACC-CCAGGAAGC------CTTGGAC-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_8_865
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 44
+# Identity:      12/44 (27.3%)
+# Similarity:    12/44 (27.3%)
+# Gaps:          31/44 (70.5%)
+# Score: 44.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---------CGACAGGTTCAGAGTTCTACAGTCC---GACGATC     32
+                              |  ||||.  ||           ||   |||    
+FC12044_91407      1 TTTCCCACCC--CAGGA--AG-----------CCTTGGAC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      17/37 (45.9%)
+# Similarity:    17/37 (45.9%)
+# Gaps:          16/37 (43.2%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAG-CT-CGTATGCC--GTCTTCTGCTTG     33
+                       ||     || || ||  ||||  |.|..||.|   
+FC12044_91407      1 --TC-----AGCCTCCG--TGCCCAGCCCACTCC---     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||  || |.|.|||..|.| ||     |||     
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 58
+# Identity:      18/58 (31.0%)
+# Similarity:    18/58 (31.0%)
+# Gaps:          33/58 (56.9%)
+# Score: 98.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+                           .|.|   ||.|||.|             |||..|.| ||     
+FC12044_91407      1 ------TCAG---CCTCCGTG-------------CCCAGCCC-AC-----     22
+
+Illumina_Geno     51 TCCGATCT     58
+                     |||     
+FC12044_91407     23 TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      14/36 (38.9%)
+# Similarity:    14/36 (38.9%)
+# Gaps:          13/36 (36.1%)
+# Score: 68.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT--     34
+                               .|.||.|.||.||.|..||.| ||  
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCA-CTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||  || |.|.|||..|.| ||     |||     
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          29/43 (67.4%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAG---CAGGAATGCCGAG--------     32
+                                    ||||   |.|   ||||.||        
+FC12044_91407      1 ---------------TCAGCCTCCG---TGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||  || |.|.|||..|.| ||     |||     
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 58
+# Identity:      18/58 (31.0%)
+# Similarity:    18/58 (31.0%)
+# Gaps:          33/58 (56.9%)
+# Score: 98.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCT     50
+                           .|.|   ||.|||.|             |||..|.| ||     
+FC12044_91407      1 ------TCAG---CCTCCGTG-------------CCCAGCCC-AC-----     22
+
+Illumina_Pair     51 TCCGATCT     58
+                     |||     
+FC12044_91407     23 TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 63
+# Identity:      19/63 (30.2%)
+# Similarity:    19/63 (30.2%)
+# Gaps:          40/63 (63.5%)
+# Score: 99.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCT-CG-GCATTCCTGCTGAACC     48
+                                            ||.|.|| || ||   ||.||    ||
+FC12044_91407      1 -----------------------TCAGCCTCCGTGC---CCAGC----CC     20
+
+Illumina_Pair     49 GCTCTTCCGATCT     61
+                     .|||  |      
+FC12044_91407     21 ACTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      16/36 (44.4%)
+# Similarity:    16/36 (44.4%)
+# Gaps:          14/36 (38.9%)
+# Score: 78.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACA--CT-CTTTCCCTACACGACGCTCTTCCGATCT     33
+                     .||  || |.|.|||..|.| ||     |||     
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCC-AC-----TCC-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      18/40 (45.0%)
+# Similarity:    18/40 (45.0%)
+# Gaps:          18/40 (45.0%)
+# Score: 92.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 -CGGTCT-CG-GCATTCCTGCTGAACCGCTCTTCCGATCT     37
+                      |.|.|| || ||   ||.||    ||.|||  |      
+FC12044_91407      1 TCAGCCTCCGTGC---CCAGC----CCACTC--C------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 50.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACT--GT----AG--AACTCTGAAC     26
+                          ||.|.||  ||    ||  .||||    |
+FC12044_91407      1 -----TCAGCCTCCGTGCCCAGCCCACTC----C     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      14/34 (41.2%)
+# Similarity:    14/34 (41.2%)
+# Gaps:          17/34 (50.0%)
+# Score: 53.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAG-----GTTCAGAGTTCTACAGTCCGAC---     26
+                     .|||     ||.|      |  |||.|| ||   
+FC12044_91407      1 TCAGCCTCCGTGC------C--CAGCCC-ACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                               .|.||.|.||.              
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGCCGTCTTCTGCTTG-------------     21
+                     ||   .||| ||     |.||             
+FC12044_91407      1 TC---AGCC-TC-----CGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                               .|.||.|.||.              
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+                           .|.|   ||.|||.   |||   |      |.||  |||  
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          19/38 (50.0%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAG-----GTTCAGAGTTCTACAGTCCGACGATC-     32
+                       .|||     ||.|      |  |||.|| ||  || 
+FC12044_91407      1 --TCAGCCTCCGTGC------C--CAGCCC-AC--TCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 29
+# Identity:      14/29 (48.3%)
+# Similarity:    14/29 (48.3%)
+# Gaps:          12/29 (41.4%)
+# Score: 50.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGGACT--GT----AG--AACTCTGAAC     21
+                     ||.|.||  ||    ||  .||||    |
+FC12044_91407      1 TCAGCCTCCGTGCCCAGCCCACTC----C     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      12/42 (28.6%)
+# Similarity:    12/42 (28.6%)
+# Gaps:          30/42 (71.4%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTCAGAGTTCTACAGTCCGACATG-------------     29
+                           ||||    |  |  ||||   ||             
+FC12044_91407      1 ------TCAG----C--C--TCCG---TGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       9/37 (24.3%)
+# Similarity:     9/37 (24.3%)
+# Gaps:          26/37 (70.3%)
+# Score: 30.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------------CAAGCAGAAGACGGCA-TACGANN     23
+                                  |.|||      |  || |.|    
+FC12044_91407      1 TCAGCCTCCGTGCCCAGC------C--CACTCC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      10/34 (29.4%)
+# Similarity:    10/34 (29.4%)
+# Gaps:          22/34 (64.7%)
+# Score: 43.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGCCGTCTTCTGCTTG-------------     21
+                     ||   .||| ||     |.||             
+FC12044_91407      1 TC---AGCC-TC-----CGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                               .|.||.|.||.              
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+                           .|.|   ||.|||.   |||   |      |.||  |||  
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 42
+# Identity:      13/42 (31.0%)
+# Similarity:    13/42 (31.0%)
+# Gaps:          27/42 (64.3%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -------CCGA---CAGGTTCAGAGTTCTACAGTCCGACATG     32
+                            |||.   |||   |      |.||  |||      
+FC12044_91407      1 TCAGCCTCCGTGCCCAG---C------CCAC--TCC------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+                               .|.||.|.||.              
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      16/31 (51.6%)
+# Similarity:    16/31 (51.6%)
+# Gaps:          11/31 (35.5%)
+# Score: 59.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 GTTCAG----AGTTCTACAGTCCGACGATC-     26
+                       ||||    .||.| .|||.|| ||  || 
+FC12044_91407      1 --TCAGCCTCCGTGC-CCAGCCC-AC--TCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      12/31 (38.7%)
+# Similarity:    12/31 (38.7%)
+# Gaps:          15/31 (48.4%)
+# Score: 42.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ------T-CGTATGCC--GTCTTCTGCTTGT     22
+                           | ||  ||||  |.|..||.|    
+FC12044_91407      1 TCAGCCTCCG--TGCCCAGCCCACTCC----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       6/35 (17.1%)
+# Similarity:     6/35 (17.1%)
+# Gaps:          24/35 (68.6%)
+# Score: 33.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+                               .|.||.|.||.              
+FC12044_91407      1 ----------TCAGCCTCCGTGCCCAGCCCACTCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 47
+# Identity:      17/47 (36.2%)
+# Similarity:    17/47 (36.2%)
+# Gaps:          25/47 (53.2%)
+# Score: 78.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGA---CAGGTTCAGAGTTCTACAGTCCGA     44
+                           .|.|   ||.|||.   |||   |      |.||  |||  
+FC12044_91407      1 ------TCAG---CCTCCGTGCCCAG---C------CCAC--TCC--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_292_484
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 38
+# Identity:      16/38 (42.1%)
+# Similarity:    16/38 (42.1%)
+# Gaps:          19/38 (50.0%)
+# Score: 59.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAG-----GTTCAGAGTTCTACAGTCCGACGATC-     32
+                       .|||     ||.|      |  |||.|| ||  || 
+FC12044_91407      1 --TCAGCCTCCGTGC------C--CAGCCC-AC--TCC     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      12/43 (27.9%)
+# Similarity:    12/43 (27.9%)
+# Gaps:          28/43 (65.1%)
+# Score: 44.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 GATCGGAAGAGCT----C------GTATGCCGTCTTCTGCTTG     33
+                      .||||.|| |||    |      ||.                
+FC12044_91407      1 -CTCGGGAG-GCTGAGGCAGGGGGGTT----------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+                                   |.|  ||.|||    |       ||       
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      10/71 (14.1%)
+# Similarity:    10/71 (14.1%)
+# Gaps:          59/71 (83.1%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC--GACGCT     48
+                                                            |.|  ||.|||
+FC12044_91407      1 ---------------------------------------CTCGGGAGGCT     11
+
+Illumina_Geno     49 ----C-------TTCCGATCT     58
+                         |       ||       
+FC12044_91407     12 GAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:      14/37 (37.8%)
+# Similarity:    14/37 (37.8%)
+# Gaps:          15/37 (40.5%)
+# Score: 43.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 CAAGCAGAAGAC---GGCATACGAGCTCTTCCGATCT     34
+                     |.  |.|.||.|   ||||...|.|   ||       
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGG---TT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+                                   |.|  ||.|||    |       ||       
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      16/35 (45.7%)
+# Similarity:    16/35 (45.7%)
+# Gaps:          13/35 (37.1%)
+# Score: 57.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG---     32
+                      .||||.|| ||.|.  .|||||      |.|   
+FC12044_91407      1 -CTCGGGAG-GCTGA--GGCAGG------GGGGTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+                                   |.|  ||.|||    |       ||       
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 71
+# Identity:      10/71 (14.1%)
+# Similarity:    10/71 (14.1%)
+# Gaps:          59/71 (83.1%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACAC--GACGCT     48
+                                                            |.|  ||.|||
+FC12044_91407      1 ---------------------------------------CTCGGGAGGCT     11
+
+Illumina_Pair     49 ----C-------TTCCGATCT     58
+                         |       ||       
+FC12044_91407     12 GAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 69
+# Identity:      14/69 (20.3%)
+# Similarity:    14/69 (20.3%)
+# Gaps:          52/69 (75.4%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                                                 |||||.|    .|||||.  ||
+FC12044_91407      1 ----------------------------CTCGGGA----GGCTGAG--GC     16
+
+Illumina_Pair     51 --------TCTTCCGATCT     61
+                             |          
+FC12044_91407     17 AGGGGGGTT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 46
+# Identity:      10/46 (21.7%)
+# Similarity:    10/46 (21.7%)
+# Gaps:          34/46 (73.9%)
+# Score: 34.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC--GACGCT----C-------TTCCGATCT     33
+                                   |.|  ||.|||    |       ||       
+FC12044_91407      1 --------------CTCGGGAGGCTGAGGCAGGGGGGTT-------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 45
+# Identity:      14/45 (31.1%)
+# Similarity:    14/45 (31.1%)
+# Gaps:          28/45 (62.2%)
+# Score: 50.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGCATTCCTGCTGAACCGC--------TCTTCCGATCT     37
+                         |||||.|    .|||||.  ||        |          
+FC12044_91407      1 ----CTCGGGA----GGCTGAG--GCAGGGGGGTT----------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 36
+# Identity:      12/36 (33.3%)
+# Similarity:    12/36 (33.3%)
+# Gaps:          21/36 (58.3%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 GATCGTCGGACTGTAGAACTCTGA-AC---------     26
+                        | ||||   |..|    |||| .|         
+FC12044_91407      1 ---C-TCGG---GAGG----CTGAGGCAGGGGGGTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       8/40 (20.0%)
+# Similarity:     8/40 (20.0%)
+# Gaps:          29/40 (72.5%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --------------ACAGGTTCAGAGTTCTACAGTCCGAC     26
+                                   .||||   .|.|||            
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+                     |.  |.|.||.|   ||||       |    
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 27.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 -TCGTATGCCGTCTTCT---GC-------TTG     21
+                      |||...|  |    ||   ||       || 
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+                     |.  |.|.||.|   ||||       |    
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                            |      ||| ||     |.||||   .|.|||          
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+
+Illumina_DpnI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 --CGACAGGTTCAGAGTTCTACAG------TCCGACGATC     32
+                       ||..|||  |.|||    .|||      |         
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGGACTGTAGAACTCTGA-AC---------     21
+                      ||||   |..|    |||| .|         
+FC12044_91407      1 CTCGG---GAGG----CTGAGGCAGGGGGGTT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:       8/43 (18.6%)
+# Similarity:     8/43 (18.6%)
+# Gaps:          32/43 (74.4%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 --------------ACAGGTTCAGAGTTCTACAGTCCGACATG     29
+                                   .||||   .|.|||               
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGAC---GGCA-------TACGANN     23
+                     |.  |.|.||.|   ||||       |      
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      11/32 (34.4%)
+# Similarity:    11/32 (34.4%)
+# Gaps:          18/32 (56.2%)
+# Score: 27.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -TCGTATGCCGTCTTCT---GC-------TTG     21
+                      |||...|  |    ||   ||       || 
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+                     |.  |.|.||.|   ||||       |    
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                            |      ||| ||     |.||||   .|.|||          
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+
+Illumina_NlaI     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 43
+# Identity:      11/43 (25.6%)
+# Similarity:    11/43 (25.6%)
+# Gaps:          29/43 (67.4%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ---------CCGA--CAGGTTCAGAGTTCTACAGTCCGACATG     32
+                              |.||  ||||   .|.|||               
+FC12044_91407      1 CTCGGGAGGCTGAGGCAGG---GGGGTT---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+                     |.  |.|.||.|   ||||       |    
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:       9/40 (22.5%)
+# Similarity:     9/40 (22.5%)
+# Gaps:          29/40 (72.5%)
+# Score: 25.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --------GTTCAGAGTTCTACAG------TCCGACGATC     26
+                             |  |.|||    .|||      |         
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          19/33 (57.6%)
+# Score: 27.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 -TCGTATGCCGTCTTCT---GC-------TTGT     22
+                      |||...|  |    ||   ||       ||  
+FC12044_91407      1 CTCGGGAG--G----CTGAGGCAGGGGGGTT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      11/31 (35.5%)
+# Similarity:    11/31 (35.5%)
+# Gaps:          16/31 (51.6%)
+# Score: 41.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGAC---GGCA-------TACGA     21
+                     |.  |.|.||.|   ||||       |    
+FC12044_91407      1 CT--CGGGAGGCTGAGGCAGGGGGGTT----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 51
+# Identity:      15/51 (29.4%)
+# Similarity:    15/51 (29.4%)
+# Gaps:          33/51 (64.7%)
+# Score: 52.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATAC------GGC-GACCACCGACAGGTTCAGAGTTCTACAGTCCG     43
+                            |      ||| ||     |.||||   .|.|||          
+FC12044_91407      1 -------CTCGGGAGGCTGA-----GGCAGG---GGGGTT----------     25
+
+Illumina_Smal     44 A     44
+                      
+FC12044_91407     26 -     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_675_16
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          23/40 (57.5%)
+# Score: 42.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 --CGACAGGTTCAGAGTTCTACAG------TCCGACGATC     32
+                       ||..|||  |.|||    .|||      |         
+FC12044_91407      1 CTCGGGAGG--CTGAG----GCAGGGGGGTT---------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomici_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      16/40 (40.0%)
+# Similarity:    16/40 (40.0%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ---GATC-GGAA--G-AGCTCGTATGCCGTCTTCTGCTTG     33
+                        .||| .|||  | |||||     ||  ||        
+FC12044_91407      1 CCAAATCTTGAATTGTAGCTC-----CC--CT--------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+                               ||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      15/65 (23.1%)
+# Similarity:    15/65 (23.1%)
+# Gaps:          47/65 (72.3%)
+# Score: 80.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACG     43
+                                     || |.||||..|       |||   ||||     
+FC12044_91407      1 ----------------CC-AAATCTTGAATTGTAGCTC---CCCT-----     25
+
+Illumina_Geno     44 ACGCTCTTCCGATCT     58
+                                    
+FC12044_91407     26 ---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      17/39 (43.6%)
+# Similarity:    17/39 (43.6%)
+# Gaps:          19/39 (48.7%)
+# Score: 62.0
+# 
+#
+#=======================================
+
+Illumina_Geno      1 -CAAG-C-AGAA--GACGGCATACGAGCTCTTCCGATCT     34
+                      |||. | .|||  |.         |||||  ||   ||
+FC12044_91407      1 CCAAATCTTGAATTGT---------AGCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Genomic_DNA_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_Geno      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+                               ||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 39
+# Identity:      15/39 (38.5%)
+# Similarity:    15/39 (38.5%)
+# Gaps:          21/39 (53.8%)
+# Score: 37.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ---GATC-GGAA--G-AGCGGTTCAGCAGGAATGCCGAG     32
+                        .||| .|||  | |||   ||  |       ||.  
+FC12044_91407      1 CCAAATCTTGAATTGTAGC---TC--C-------CCT--     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+                               ||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 65
+# Identity:      15/65 (23.1%)
+# Similarity:    15/65 (23.1%)
+# Gaps:          47/65 (72.3%)
+# Score: 80.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 AATGATACGGCGACCACCGAGATCTACA-------CTCTTTCCCTACACG     43
+                                     || |.||||..|       |||   ||||     
+FC12044_91407      1 ----------------CC-AAATCTTGAATTGTAGCTC---CCCT-----     25
+
+Illumina_Pair     44 ACGCTCTTCCGATCT     58
+                                    
+FC12044_91407     26 ---------------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_PCR_Primers1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 61
+# Identity:      21/61 (34.4%)
+# Similarity:    21/61 (34.4%)
+# Gaps:          36/61 (59.0%)
+# Score: 74.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGC     50
+                                |  ||.|         |||.|  |.|     ||.|  ||
+FC12044_91407      1 -----------C--CAAA---------TCTTG--AAT-----TGTA--GC     19
+
+Illumina_Pair     51 TCTTCCGATCT     61
+                     ||  ||   ||
+FC12044_91407     20 TC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 40
+# Identity:      13/40 (32.5%)
+# Similarity:    13/40 (32.5%)
+# Gaps:          22/40 (55.0%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_Pair      1 ACACTCTTTCCCTACAC-------GACGCTCTTCCGATCT     33
+                               ||.|..|       |..||||  ||   ||
+FC12044_91407      1 ----------CCAAATCTTGAATTGTAGCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Paired_End_DNA_sequencing_primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 41
+# Identity:      17/41 (41.5%)
+# Similarity:    17/41 (41.5%)
+# Gaps:          20/41 (48.8%)
+# Score: 66.0
+# 
+#
+#=======================================
+
+Illumina_Pair      1 CGGTCTCGGC--ATTCCTGC--TGAACCGCTCTTCCGATCT     37
+                              |  |.||.||.  ||.|  ||||  ||   ||
+FC12044_91407      1 ---------CCAAATCTTGAATTGTA--GCTC--CC---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      15/32 (46.9%)
+# Similarity:    15/32 (46.9%)
+# Gaps:          13/32 (40.6%)
+# Score: 61.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ---GATCGTCGGACTGTAGAACTCTGAAC---     26
+                        .|||.| |.|.|||||  |||    |   
+FC12044_91407      1 CCAAATCTT-GAATTGTAG--CTC----CCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 30
+# Identity:      14/30 (46.7%)
+# Similarity:    14/30 (46.7%)
+# Gaps:           9/30 (30.0%)
+# Score: 49.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 ACAGGTTC-AGAGTTCTA-CAGTCCGAC--     26
+                      |....|| .||.||.|| |  |||  |  
+FC12044_91407      1 -CCAAATCTTGAATTGTAGC--TCC--CCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                     |   ||.|.     |.|  ||              
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       8/37 (21.6%)
+# Similarity:     8/37 (21.6%)
+# Gaps:          28/37 (75.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 TCGTATGCC--GTCTT--------------CTGCTTG     21
+                            ||  .||||              ||     
+FC12044_91407      1 -------CCAAATCTTGAATTGTAGCTCCCCT-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                     |   ||.|.     |.|  ||              
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+                                     ||.|    .|| .||.||    ||.|   ||. 
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_DpnII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_DpnI      1 CGACAGGTTC-AGAGTTCTA-CAGTCCGACGATC-     32
+                     |  || ..|| .||.||.|| |  |||  |   | 
+FC12044_91407      1 C--CA-AATCTTGAATTGTAGC--TCC--C---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      13/31 (41.9%)
+# Similarity:    13/31 (41.9%)
+# Gaps:          16/31 (51.6%)
+# Score: 55.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -----TC--GGACTGTAGAACTCTGAAC---     21
+                          ||  |.|.|||||  |||    |   
+FC12044_91407      1 CCAAATCTTGAATTGTAG--CTC----CCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters1_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 31
+# Identity:      15/31 (48.4%)
+# Similarity:    15/31 (48.4%)
+# Gaps:           8/31 (25.8%)
+# Score: 50.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 ACAGGTTC-AGAGTTCTA-CAGTCCGACATG     29
+                      |....|| .||.||.|| |  |||  |.| 
+FC12044_91407      1 -CCAAATCTTGAATTGTAGC--TCC--CCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 33
+# Identity:      11/33 (33.3%)
+# Similarity:    11/33 (33.3%)
+# Gaps:          18/33 (54.5%)
+# Score: 20.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 -CAAG-C-AGAA--GA-----CGGCATACGANN     23
+                      |||. | .|||  |.     |  |.|      
+FC12044_91407      1 CCAAATCTTGAATTGTAGCTCC--CCT------     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_Adapters2_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 37
+# Identity:       8/37 (21.6%)
+# Similarity:     8/37 (21.6%)
+# Gaps:          28/37 (75.7%)
+# Score: 39.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 TCGTATGCC--GTCTT--------------CTGCTTG     21
+                            ||  .||||              ||     
+FC12044_91407      1 -------CCAAATCTTGAATTGTAGCTCCCCT-----     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CAAGCAGAAGACGGCATACGA--------------     21
+                     |   ||.|.     |.|  ||              
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+                                     ||.|    .|| .||.||    ||.|   ||. 
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_NlaIII_Gex_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      17/34 (50.0%)
+# Similarity:    17/34 (50.0%)
+# Gaps:          11/34 (32.4%)
+# Score: 62.5
+# 
+#
+#=======================================
+
+Illumina_NlaI      1 CCGACAGGTTC-AGAGTTCTA-CAGTCCGACATG     32
+                     ||.|    .|| .||.||.|| |  |||  |.| 
+FC12044_91407      1 CCAA----ATCTTGAATTGTAGC--TCC--CCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_RT_Primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+                     |   ||.|.     |.|  ||              
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_5p_Adapter
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 32
+# Identity:      14/32 (43.8%)
+# Similarity:    14/32 (43.8%)
+# Gaps:          13/32 (40.6%)
+# Score: 46.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 ---GTTC-AGAGTTCTA-CAGTCCGACGATC-     26
+                        ..|| .||.||.|| |  |||  |   | 
+FC12044_91407      1 CCAAATCTTGAATTGTAGC--TCC--C---CT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_3p_Adapter
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 34
+# Identity:      11/34 (32.4%)
+# Similarity:    11/34 (32.4%)
+# Gaps:          21/34 (61.8%)
+# Score: 45.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 TCGTATGCC--GTCTTCTG-CTTGT---------     22
+                            ||  .|||  || .||||         
+FC12044_91407      1 -------CCAAATCT--TGAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_1
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:       8/35 (22.9%)
+# Similarity:     8/35 (22.9%)
+# Gaps:          24/35 (68.6%)
+# Score: 23.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CAAGCAGAAGACGGCATACGA--------------     21
+                     |   ||.|.     |.|  ||              
+FC12044_91407      1 C---CAAAT-----CTT--GAATTGTAGCTCCCCT     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_PCR_Primer_2
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 49
+# Identity:      14/49 (28.6%)
+# Similarity:    14/49 (28.6%)
+# Gaps:          29/49 (59.2%)
+# Score: 54.0
+# 
+#
+#=======================================
+
+Illumina_Smal      1 AATGATACGGCGACCACCGACAGGTTC-AGAGTT----CTACAGTCCGA     44
+                                     ||.|    .|| .||.||    ||.|   ||. 
+FC12044_91407      1 ----------------CCAA----ATCTTGAATTGTAGCTCC---CCT-     25
+
+
+#=======================================
+#
+# Aligned_sequences: 2
+# 1: Illumina_Small_RNA_sequencing_primer
+# 2: FC12044_91407_8_200_285_136
+# Matrix: EPAM30
+# Gap_penalty: 10.0
+# Extend_penalty: 0.5
+#
+# Length: 35
+# Identity:      17/35 (48.6%)
+# Similarity:    17/35 (48.6%)
+# Gaps:          13/35 (37.1%)
+# Score: 51.5
+# 
+#
+#=======================================
+
+Illumina_Smal      1 CGACAGGTTC-AGAGTTCTA-CAGTCCGACGATC-     32
+                     |  || ..|| .||.||.|| |  |||  |   | 
+FC12044_91407      1 C--CA-AATCTTGAATTGTAGC--TCC--C---CT     25
+
+
+#---------------------------------------
+#---------------------------------------
diff -r 000000000000 -r 76373359fce2 test-data/emboss_needleall_out.score
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/emboss_needleall_out.score	Mon Jan 20 16:21:51 2025 +0000
@@ -0,0 +1,777 @@
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_406_24 38 (21.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_406_24 39 (24.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_406_24 60 (31.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_406_24 44 (25.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_406_24 39 (24.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_406_24 49 (16.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_406_24 39 (24.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_406_24 60 (31.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_406_24 67 (21.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_406_24 39 (24.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_406_24 43 (21.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_406_24 38 (14.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_406_24 40 (24.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_406_24 29 (12.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_406_24 30 (12.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_406_24 29 (12.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_406_24 45 (41.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_406_24 42 (23.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_406_24 34 (12.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_406_24 40 (27.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_406_24 31 (12.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_406_24 30 (12.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_406_24 29 (12.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_406_24 45 (41.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_406_24 40 (27.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_406_24 29 (12.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_406_24 36 (23.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_406_24 31 (13.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_406_24 29 (12.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_406_24 45 (41.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_406_24 42 (23.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_720_610 44 (17.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_720_610 40 (31.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_720_610 61 (31.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_720_610 47 (20.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_720_610 40 (31.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_720_610 40 (31.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_720_610 61 (31.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_720_610 64 (33.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_720_610 40 (31.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_720_610 40 (33.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_720_610 43 (20.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_720_610 40 (9.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_720_610 36 (11.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_720_610 39 (15.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_720_610 36 (11.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_720_610 59 (10.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_720_610 44 (15.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_720_610 38 (20.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_720_610 42 (9.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_720_610 36 (7.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_720_610 39 (15.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_720_610 36 (11.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_720_610 59 (10.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_720_610 45 (9.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_720_610 36 (11.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_720_610 38 (15.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_720_610 42 (15.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_720_610 36 (11.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_720_610 59 (10.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_720_610 44 (15.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_345_133 47 (8.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_345_133 53 (16.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_345_133 69 (20.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_345_133 45 (21.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_345_133 53 (16.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_345_133 54 (6.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_345_133 53 (16.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_345_133 69 (20.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_345_133 72 (21.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_345_133 53 (16.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_345_133 57 (16.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_345_133 33 (27.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_345_133 40 (19.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_345_133 32 (21.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_345_133 41 (7.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_345_133 32 (21.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_345_133 56 (16.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_345_133 37 (16.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_345_133 28 (27.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_345_133 34 (24.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_345_133 34 (21.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_345_133 41 (7.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_345_133 32 (21.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_345_133 56 (16.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_345_133 37 (24.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_345_133 32 (21.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_345_133 44 (17.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_345_133 41 (12.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_345_133 32 (21.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_345_133 56 (16.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_345_133 37 (16.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_106_131 43 (32.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_106_131 36 (33.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_106_131 61 (33.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_106_131 42 (21.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_106_131 36 (33.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_106_131 48 (21.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_106_131 36 (33.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_106_131 61 (33.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_106_131 64 (31.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_106_131 36 (33.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_106_131 43 (33.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_106_131 35 (40.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_106_131 31 (26.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_106_131 32 (11.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_106_131 31 (32.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_106_131 32 (11.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_106_131 52 (24.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_106_131 37 (24.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_106_131 32 (32.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_106_131 36 (26.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_106_131 32 (7.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_106_131 31 (32.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_106_131 32 (11.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_106_131 52 (24.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_106_131 36 (29.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_106_131 32 (11.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_106_131 34 (24.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_106_131 32 (32.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_106_131 32 (11.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_106_131 52 (24.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_106_131 37 (24.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_916_471 37 (25.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_916_471 52 (12.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_916_471 73 (18.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_916_471 43 (20.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_916_471 52 (12.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_916_471 35 (32.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_916_471 52 (12.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_916_471 73 (18.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_916_471 70 (20.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_916_471 52 (12.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_916_471 49 (17.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_916_471 31 (35.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_916_471 34 (18.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_916_471 30 (20.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_916_471 40 (21.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_916_471 30 (20.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_916_471 46 (24.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_916_471 38 (19.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_916_471 31 (28.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_916_471 37 (18.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_916_471 32 (20.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_916_471 40 (21.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_916_471 30 (20.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_916_471 46 (24.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_916_471 37 (15.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_916_471 30 (20.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_916_471 37 (13.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_916_471 40 (17.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_916_471 30 (20.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_916_471 46 (24.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_916_471 38 (19.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_57_85 39 (17.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_57_85 45 (13.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_57_85 66 (15.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_57_85 45 (29.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_57_85 45 (13.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_57_85 35 (41.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_57_85 45 (13.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_57_85 66 (15.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_57_85 72 (29.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_57_85 45 (13.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_57_85 50 (15.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_57_85 40 (20.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_57_85 38 (11.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_57_85 32 (29.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_57_85 29 (7.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_57_85 32 (29.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_57_85 51 (18.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_57_85 45 (12.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_57_85 28 (18.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_57_85 38 (16.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_57_85 34 (29.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_57_85 29 (7.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_57_85 32 (29.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_57_85 51 (18.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_57_85 38 (22.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_57_85 32 (29.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_57_85 38 (12.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_57_85 30 (7.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_57_85 32 (29.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_57_85 51 (18.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_57_85 45 (12.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_10_437 50 (31.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_10_437 45 (18.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_10_437 70 (18.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_10_437 49 (23.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_10_437 45 (18.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_10_437 36 (29.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_10_437 45 (18.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_10_437 70 (18.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_10_437 76 (23.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_10_437 45 (18.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_10_437 48 (20.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_10_437 37 (13.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_10_437 44 (15.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_10_437 36 (23.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_10_437 38 (31.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_10_437 36 (23.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_10_437 51 (17.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_10_437 48 (16.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_10_437 35 (14.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_10_437 47 (15.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_10_437 38 (23.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_10_437 38 (31.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_10_437 36 (23.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_10_437 51 (17.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_10_437 47 (19.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_10_437 36 (23.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_10_437 43 (10.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_10_437 38 (27.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_10_437 36 (23.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_10_437 51 (17.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_10_437 48 (16.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_154_436 40 (22.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_154_436 38 (33.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_154_436 63 (33.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_154_436 41 (26.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_154_436 38 (33.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_154_436 37 (22.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_154_436 38 (33.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_154_436 63 (33.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_154_436 65 (36.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_154_436 38 (33.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_154_436 43 (18.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_154_436 31 (42.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_154_436 29 (25.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_154_436 34 (29.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_154_436 33 (16.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_154_436 34 (29.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_154_436 58 (27.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_154_436 34 (21.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_154_436 31 (35.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_154_436 31 (21.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_154_436 34 (25.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_154_436 33 (16.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_154_436 34 (29.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_154_436 58 (27.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_154_436 34 (21.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_154_436 34 (29.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_154_436 32 (19.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_154_436 34 (16.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_154_436 34 (29.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_154_436 58 (27.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_154_436 34 (21.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_336_64 44 (29.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_336_64 38 (22.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_336_64 61 (19.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_336_64 39 (34.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_336_64 38 (22.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_336_64 35 (35.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_336_64 38 (22.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_336_64 61 (19.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_336_64 66 (26.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_336_64 38 (22.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_336_64 46 (18.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_336_64 40 (16.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_336_64 33 (29.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_336_64 28 (23.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_336_64 36 (18.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_336_64 28 (23.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_336_64 53 (30.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_336_64 39 (29.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_336_64 35 (10.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_336_64 36 (29.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_336_64 30 (23.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_336_64 36 (18.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_336_64 28 (23.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_336_64 53 (30.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_336_64 39 (29.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_336_64 28 (23.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_336_64 35 (20.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_336_64 37 (18.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_336_64 28 (23.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_336_64 53 (30.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_336_64 39 (29.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_620_233 50 (22.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_620_233 40 (20.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_620_233 61 (28.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_620_233 50 (16.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_620_233 40 (20.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_620_233 44 (15.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_620_233 40 (20.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_620_233 61 (28.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_620_233 67 (33.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_620_233 40 (20.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_620_233 43 (33.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_620_233 34 (27.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_620_233 38 (26.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_620_233 34 (6.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_620_233 38 (22.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_620_233 34 (6.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_620_233 57 (21.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_620_233 40 (27.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_620_233 34 (20.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_620_233 39 (26.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_620_233 36 (6.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_620_233 38 (22.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_620_233 34 (6.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_620_233 57 (21.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_620_233 42 (26.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_620_233 34 (6.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_620_233 34 (27.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_620_233 38 (27.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_620_233 34 (6.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_620_233 57 (21.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_620_233 40 (27.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_902_349 43 (25.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_902_349 42 (11.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_902_349 68 (32.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_902_349 40 (16.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_902_349 42 (11.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_902_349 46 (28.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_902_349 42 (11.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_902_349 68 (32.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_902_349 64 (22.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_902_349 42 (11.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_902_349 53 (18.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_902_349 34 (25.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_902_349 32 (16.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_902_349 34 (13.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_902_349 54 (32.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_902_349 39 (20.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_902_349 41 (25.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_902_349 37 (16.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_902_349 34 (13.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_902_349 54 (32.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_902_349 38 (16.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_902_349 34 (16.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_902_349 35 (13.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_902_349 35 (16.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_902_349 54 (32.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_902_349 39 (20.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_40_618 44 (10.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_40_618 40 (30.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_40_618 65 (30.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_40_618 57 (10.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_40_618 40 (30.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_40_618 36 (12.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_40_618 40 (30.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_40_618 65 (30.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_40_618 72 (16.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_40_618 40 (30.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_40_618 48 (16.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_40_618 45 (12.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_40_618 42 (17.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_40_618 38 (5.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_40_618 32 (10.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_40_618 38 (5.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_40_618 61 (13.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_40_618 50 (13.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_40_618 40 (12.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_40_618 43 (18.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_40_618 44 (2.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_40_618 32 (10.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_40_618 38 (5.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_40_618 61 (13.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_40_618 46 (18.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_40_618 38 (5.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_40_618 44 (13.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_40_618 43 (11.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_40_618 38 (5.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_40_618 61 (13.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_40_618 50 (13.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_83_511 35 (31.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_83_511 42 (28.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_83_511 64 (42.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_83_511 42 (22.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_83_511 42 (28.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_83_511 48 (12.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_83_511 42 (28.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_83_511 64 (42.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_83_511 69 (25.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_83_511 42 (28.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_83_511 45 (25.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_83_511 37 (30.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_83_511 34 (28.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_83_511 36 (12.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_83_511 30 (23.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_83_511 36 (12.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_83_511 53 (23.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_83_511 39 (22.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_83_511 32 (30.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_83_511 34 (25.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_83_511 38 (12.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_83_511 30 (23.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_83_511 36 (12.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_83_511 53 (23.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_83_511 37 (25.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_83_511 36 (12.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_83_511 33 (22.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_83_511 31 (23.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_83_511 36 (12.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_83_511 53 (23.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_83_511 39 (22.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_76_246 47 (21.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_76_246 50 (18.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_76_246 75 (18.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_76_246 51 (18.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_76_246 50 (18.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_76_246 36 (25.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_76_246 50 (18.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_76_246 75 (18.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_76_246 65 (29.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_76_246 50 (18.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_76_246 48 (21.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_76_246 39 (20.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_76_246 36 (23.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_76_246 38 (13.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_76_246 38 (17.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_76_246 38 (13.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_76_246 54 (23.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_76_246 42 (23.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_76_246 28 (14.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_76_246 39 (23.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_76_246 40 (13.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_76_246 38 (17.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_76_246 38 (13.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_76_246 54 (23.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_76_246 42 (23.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_76_246 38 (13.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_76_246 36 (23.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_76_246 30 (14.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_76_246 38 (13.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_76_246 54 (23.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_76_246 42 (23.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_303_427 35 (29.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_303_427 47 (31.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_303_427 59 (35.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_303_427 45 (27.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_303_427 47 (31.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_303_427 46 (14.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_303_427 47 (31.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_303_427 59 (35.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_303_427 65 (25.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_303_427 47 (31.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_303_427 41 (25.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_303_427 29 (17.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_303_427 33 (40.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_303_427 40 (12.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_303_427 30 (22.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_303_427 40 (12.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_303_427 51 (40.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_303_427 38 (44.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_303_427 28 (16.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_303_427 36 (40.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_303_427 40 (8.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_303_427 30 (22.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_303_427 40 (12.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_303_427 51 (40.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_303_427 39 (40.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_303_427 40 (12.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_303_427 33 (40.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_303_427 30 (27.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_303_427 40 (12.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_303_427 51 (40.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_303_427 38 (44.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_31_299 39 (26.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_31_299 36 (34.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_31_299 60 (37.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_31_299 44 (27.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_31_299 36 (34.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_31_299 39 (16.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_31_299 36 (34.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_31_299 60 (37.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_31_299 66 (32.5)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_31_299 36 (34.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_31_299 42 (32.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_31_299 44 (17.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_31_299 35 (30.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_31_299 31 (27.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_31_299 38 (22.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_31_299 31 (27.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_31_299 54 (26.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_31_299 39 (29.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_31_299 39 (17.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_31_299 35 (28.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_31_299 33 (27.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_31_299 38 (22.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_31_299 31 (27.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_31_299 54 (26.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_31_299 38 (28.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_31_299 31 (27.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_31_299 33 (29.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_31_299 41 (19.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_31_299 31 (27.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_31_299 54 (26.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_31_299 39 (29.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_553_135 45 (15.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_553_135 49 (9.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_553_135 61 (25.5)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_553_135 37 (20.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_553_135 49 (9.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_553_135 33 (44.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_553_135 49 (9.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_553_135 61 (25.5)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_553_135 62 (22.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_553_135 49 (9.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_553_135 47 (14.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_553_135 34 (17.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_553_135 42 (14.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_553_135 33 (18.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_553_135 33 (6.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_553_135 33 (18.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_553_135 44 (28.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_553_135 44 (16.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_553_135 38 (10.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_553_135 41 (13.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_553_135 35 (18.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_553_135 33 (6.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_553_135 33 (18.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_553_135 44 (28.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_553_135 44 (13.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_553_135 33 (18.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_553_135 38 (16.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_553_135 44 (6.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_553_135 33 (18.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_553_135 44 (28.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_553_135 44 (16.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_139_74 41 (19.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_139_74 41 (22.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_139_74 58 (26.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_139_74 46 (21.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_139_74 41 (22.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_139_74 44 (20.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_139_74 41 (22.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_139_74 58 (26.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_139_74 66 (25.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_139_74 41 (22.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_139_74 42 (25.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_139_74 42 (16.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_139_74 36 (34.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_139_74 39 (18.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_139_74 35 (11.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_139_74 39 (18.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_139_74 51 (46.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_139_74 38 (42.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_139_74 42 (9.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_139_74 39 (34.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_139_74 39 (14.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_139_74 35 (11.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_139_74 39 (18.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_139_74 51 (46.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_139_74 41 (38.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_139_74 39 (18.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_139_74 36 (32.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_139_74 36 (11.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_139_74 39 (18.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_139_74 51 (46.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_139_74 38 (42.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_108_33 41 (19.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_108_33 46 (2.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_108_33 67 (21.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_108_33 41 (13.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_108_33 46 (2.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_108_33 45 (23.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_108_33 46 (2.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_108_33 67 (21.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_108_33 64 (18.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_108_33 46 (2.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_108_33 40 (17.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_108_33 46 (16.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_108_33 44 (14.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_108_33 31 (10.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_108_33 29 (19.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_108_33 31 (10.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_108_33 44 (26.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_108_33 46 (12.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_108_33 43 (6.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_108_33 48 (21.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_108_33 31 (6.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_108_33 29 (19.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_108_33 31 (10.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_108_33 44 (26.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_108_33 51 (21.0)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_108_33 31 (10.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_108_33 40 (12.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_108_33 29 (15.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_108_33 31 (10.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_108_33 44 (26.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_108_33 46 (12.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_980_965 44 (30.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_980_965 38 (15.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_980_965 71 (15.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_980_965 48 (25.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_980_965 38 (15.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_980_965 36 (29.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_980_965 38 (15.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_980_965 71 (15.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_980_965 75 (25.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_980_965 38 (15.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_980_965 50 (12.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_980_965 45 (19.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_980_965 33 (37.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_980_965 35 (25.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_980_965 43 (15.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_980_965 35 (25.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_980_965 51 (37.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_980_965 39 (37.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_980_965 30 (16.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_980_965 36 (37.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_980_965 37 (25.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_980_965 43 (15.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_980_965 35 (25.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_980_965 51 (37.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_980_965 39 (37.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_980_965 35 (25.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_980_965 35 (29.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_980_965 44 (15.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_980_965 35 (25.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_980_965 51 (37.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_980_965 39 (37.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_981_857 35 (27.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_981_857 41 (26.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_981_857 66 (26.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_981_857 39 (21.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_981_857 41 (26.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_981_857 51 (19.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_981_857 41 (26.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_981_857 66 (26.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_981_857 63 (28.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_981_857 41 (26.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_981_857 47 (24.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_981_857 34 (25.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_981_857 34 (15.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_981_857 41 (16.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_981_857 30 (23.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_981_857 41 (16.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_981_857 51 (19.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_981_857 38 (15.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_981_857 34 (18.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_981_857 39 (20.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_981_857 41 (12.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_981_857 30 (23.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_981_857 41 (16.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_981_857 51 (19.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_981_857 41 (16.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_981_857 41 (16.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_981_857 39 (9.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_981_857 30 (19.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_981_857 41 (16.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_981_857 51 (19.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_981_857 38 (15.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_8_865 49 (14.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_8_865 39 (35.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_8_865 64 (35.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_8_865 45 (20.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_8_865 39 (35.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_8_865 40 (27.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_8_865 39 (35.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_8_865 64 (35.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_8_865 72 (20.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_8_865 39 (35.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_8_865 45 (15.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_8_865 40 (19.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_8_865 43 (18.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_8_865 32 (20.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_8_865 34 (14.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_8_865 32 (20.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_8_865 44 (20.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_8_865 39 (16.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_8_865 40 (21.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_8_865 38 (15.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_8_865 34 (20.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_8_865 34 (14.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_8_865 32 (20.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_8_865 44 (20.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_8_865 38 (19.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_8_865 32 (20.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_8_865 42 (12.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_8_865 34 (10.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_8_865 32 (20.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_8_865 44 (20.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_8_865 39 (16.5)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_292_484 37 (16.5)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_292_484 35 (22.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_292_484 58 (22.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_292_484 36 (24.0)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_292_484 35 (22.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_292_484 40 (31.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_292_484 35 (22.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_292_484 58 (22.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_292_484 61 (34.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_292_484 35 (22.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_292_484 37 (34.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_292_484 34 (16.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_292_484 33 (22.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_292_484 35 (10.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_292_484 30 (14.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_292_484 35 (10.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_292_484 53 (19.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_292_484 37 (22.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_292_484 29 (16.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_292_484 44 (19.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_292_484 35 (6.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_292_484 30 (14.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_292_484 35 (10.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_292_484 53 (19.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_292_484 47 (19.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_292_484 35 (10.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_292_484 31 (22.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_292_484 38 (16.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_292_484 35 (10.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_292_484 53 (19.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_292_484 37 (22.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_675_16 39 (17.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_675_16 56 (10.0)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_675_16 81 (10.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_675_16 39 (16.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_675_16 56 (10.0)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_675_16 43 (32.5)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_675_16 56 (10.0)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_675_16 81 (10.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_675_16 67 (26.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_675_16 56 (10.0)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_675_16 43 (26.0)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_675_16 43 (13.0)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_675_16 40 (17.0)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_675_16 33 (13.5)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_675_16 42 (11.0)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_675_16 33 (13.5)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_675_16 51 (17.5)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_675_16 41 (22.0)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_675_16 38 (13.0)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_675_16 43 (17.0)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_675_16 35 (13.5)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_675_16 42 (11.0)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_675_16 33 (13.5)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_675_16 51 (17.5)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_675_16 43 (21.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_675_16 33 (13.5)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_675_16 48 (15.0)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_675_16 42 (7.0)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_675_16 33 (13.5)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_675_16 51 (17.5)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_675_16 41 (22.0)
+Illumina_Genomici_DNA_Adapters1_1 FC12044_91407_8_200_285_136 40 (21.0)
+Illumina_Genomic_DNA_Adapters1_2 FC12044_91407_8_200_285_136 45 (17.5)
+Illumina_Genomic_DNA_PCR_Primers1_1 FC12044_91407_8_200_285_136 65 (30.0)
+Illumina_Genomic_DNA_PCR_Primers1_2 FC12044_91407_8_200_285_136 39 (16.5)
+Illumina_Genomic_DNA_sequencing_primer FC12044_91407_8_200_285_136 45 (17.5)
+Illumina_Paired_End_DNA_Adapters1_1 FC12044_91407_8_200_285_136 52 (7.0)
+Illumina_Paired_End_DNA_Adapters1_2 FC12044_91407_8_200_285_136 45 (17.5)
+Illumina_Paired_End_DNA_PCR_Primers1_1 FC12044_91407_8_200_285_136 65 (30.0)
+Illumina_Paired_End_DNA_PCR_Primers1_2 FC12044_91407_8_200_285_136 61 (21.0)
+Illumina_Paired_End_DNA_sequencing_primer_1 FC12044_91407_8_200_285_136 45 (17.5)
+Illumina_Paired_End_DNA_sequencing_primer_2 FC12044_91407_8_200_285_136 48 (18.5)
+Illumina_DpnII_Gex_Adapters1_1 FC12044_91407_8_200_285_136 32 (27.5)
+Illumina_DpnII_Gex_Adapters1_2 FC12044_91407_8_200_285_136 31 (13.5)
+Illumina_DpnII_Gex_Adapters2_1 FC12044_91407_8_200_285_136 43 (6.0)
+Illumina_DpnII_Gex_Adapters2_2 FC12044_91407_8_200_285_136 35 (17.5)
+Illumina_DpnII_Gex_PCR_Primer_1 FC12044_91407_8_200_285_136 43 (6.0)
+Illumina_DpnII_Gex_PCR_Primer_2 FC12044_91407_8_200_285_136 46 (12.0)
+Illumina_DpnII_Gex_sequencing_primer FC12044_91407_8_200_285_136 36 (17.5)
+Illumina_NlaIII_Gex_Adapters1_1 FC12044_91407_8_200_285_136 31 (26.5)
+Illumina_NlaIII_Gex_Adapters1_2 FC12044_91407_8_200_285_136 32 (14.5)
+Illumina_NlaIII_Gex_Adapters2_1 FC12044_91407_8_200_285_136 43 (2.0)
+Illumina_NlaIII_Gex_Adapters2_2 FC12044_91407_8_200_285_136 35 (17.5)
+Illumina_NlaIII_Gex_PCR_Primer_1 FC12044_91407_8_200_285_136 43 (6.0)
+Illumina_NlaIII_Gex_PCR_Primer_2 FC12044_91407_8_200_285_136 46 (12.0)
+Illumina_NlaIII_Gex_sequencing_primer FC12044_91407_8_200_285_136 33 (15.5)
+Illumina_Small_RNA_RT_Primer FC12044_91407_8_200_285_136 43 (6.0)
+Illumina_Small_RNA_5p_Adapter FC12044_91407_8_200_285_136 44 (15.5)
+Illumina_Small_RNA_3p_Adapter FC12044_91407_8_200_285_136 36 (17.5)
+Illumina_Small_RNA_PCR_Primer_1 FC12044_91407_8_200_285_136 43 (6.0)
+Illumina_Small_RNA_PCR_Primer_2 FC12044_91407_8_200_285_136 46 (12.0)
+Illumina_Small_RNA_sequencing_primer FC12044_91407_8_200_285_136 36 (17.5)
+
+#---------------------------------------
+#---------------------------------------