Mercurial > repos > iuc > ena_upload

comparison check_remote.py @ 6:4aab5ae907b6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit 7eafac9d91b39e43fd3820ab1431cab1c930bb01"
author iuc
date Mon, 15 Nov 2021 11:47:13 +0000
parents 26ccb678abc8
children
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5:e1b3b37aa69f 6:4aab5ae907b6
10 Checks if an entry with that alias exists in the ENA repos 10 Checks if an entry with that alias exists in the ENA repos
11 entry_type = [study | sample | experiment | run] 11 entry_type = [study | sample | experiment | run]
12 ''' 12 '''
13 assert entry_type in ['study', 'sample', 'experiment', 'run'] 13 assert entry_type in ['study', 'sample', 'experiment', 'run']
14 params_dict = {} 14 params_dict = {}
15 query_str = ' AND '.join(['%s=%s' % (key, value) for (key, value) in query_dict.items()]) 15 query_str = ' AND '.join(['%s="%s"' % (key, value) for (key, value) in query_dict.items()])
16 params_dict['query'] = query_str 16 params_dict['query'] = query_str
17 params_dict['result'] = 'read_' + entry_type 17 params_dict['result'] = 'read_' + entry_type
18 params_dict['fields'] = entry_type + '_alias' 18 params_dict['fields'] = entry_type + '_alias'
19 params_dict['format'] = out_format 19 params_dict['format'] = out_format
20 response = requests.post(URL, data=params_dict) 20 response = requests.post(URL, data=params_dict)