comparison samples_macros.xml @ 14:5cb6146337d8 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit ab38fa3d5ec06729c1efa86240ec57b8143b21ed

13:ea5e944f447d

            <repeat name="rep_sample" title="Samples associated with this study" min="1" >
                <param name="sample_title" type="text" label="Sample title"/>
                <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/>
                <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/>
                <param name="tax_id" type="text" label="Enter the taxonomic ID corresponding to the sample species" />
                <param name="collection_date" type="text" label="Collection date" optional="True" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided">
                    <option value="not collected">not collected</option>
                    <option value="restricted access">restricted access</option>
                    <option value="not provided">not provided</option>
                    <validator type="regex"  message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator>
                </param>
                <param name="geo_location_country" type="select" label="Select the country where the sample was obtained">
                    <options from_data_table="geographic_location_1">
                        <column name="value" index="0"/>
                    </options>
                </param>
                <param name="host_common_name" type="text" label="Host common name" help="e.g human"/>

            <repeat name="rep_sample" title="Samples associated with this study" min="1" >
                <param name="sample_title" type="text" label="Sample title"/>
                <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/>
                <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/>
                <param name="tax_id" type="integer" value="0" label="Enter the taxonomic ID corresponding to the sample species" />
                <param name="collection_date" type="text" label="Collection date" optional="True" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided">
                    <option value="not collected">not collected</option>
                    <option value="restricted access">restricted access</option>
                    <option value="not provided">not provided</option>
                    <validator type="regex"  message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator>
                </param>
                <param name="geo_location_country" type="select" label="Select the country where the sample was obtained">
                    <options from_data_table="geographic_location_1">
                        <column name="value" index="0"/>
                    </options>
                </param>
                <repeat name="rep_experiment" title="Sequencing experiments performed with this sample" min="1" >

14:5cb6146337d8

            <repeat name="rep_sample" title="Samples associated with this study" min="1" >
                <param name="sample_title" type="text" label="Sample title"/>
                <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/>
                <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/>
                <param name="tax_id" type="text" label="Enter the taxonomic ID corresponding to the sample species" />
                <param name="collection_date" type="text" label="Collection date" optional="False" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided">
                    <option value="not collected">not collected</option>
                    <option value="restricted access">restricted access</option>
                    <option value="not provided">not provided</option>
                    <validator type="regex"  message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator>
                </param>
                <param name="geo_location_country" type="select" optional="False" label="Select the country where the sample was obtained">
                    <options from_data_table="geographic_location_1">
                        <column name="value" index="0"/>
                    </options>
                </param>
                <param name="host_common_name" type="text" label="Host common name" help="e.g human"/>

            <repeat name="rep_sample" title="Samples associated with this study" min="1" >
                <param name="sample_title" type="text" label="Sample title"/>
                <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/>
                <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/>
                <param name="tax_id" type="integer" value="0" label="Enter the taxonomic ID corresponding to the sample species" />
                <param name="collection_date" type="text" label="Collection date" optional="False" help="options are: YYYY, YYYY-MM, YYYY-MM-DD, not collected, restricted access or not provided">
                    <option value="not collected">not collected</option>
                    <option value="restricted access">restricted access</option>
                    <option value="not provided">not provided</option>
                    <validator type="regex"  message="Data format is not valid">(^[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?(/[0-9]{4}(-[0-9]{2}(-[0-9]{2}(T[0-9]{2}:[0-9]{2}(:[0-9]{2})?Z?([+-][0-9]{1,2})?)?)?)?)?$)|(^not collected$)|(^not provided$)|(^restricted access$)</validator>
                </param>
                <param name="geo_location_country" type="select" optional="False" label="Select the country where the sample was obtained">
                    <options from_data_table="geographic_location_1">
                        <column name="value" index="0"/>
                    </options>
                </param>
                <repeat name="rep_experiment" title="Sequencing experiments performed with this sample" min="1" >