Mercurial > repos > iuc > ena_upload
diff extract_tables.py @ 7:6f6537780379 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit 9961f24acebb17f837238df6541e1af59df1163b"
author | iuc |
---|---|
date | Thu, 24 Feb 2022 18:20:40 +0000 |
parents | 57251c760cab |
children | a62c4a11a67d |
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--- a/extract_tables.py Mon Nov 15 11:47:13 2021 +0000 +++ b/extract_tables.py Thu Feb 24 18:20:40 2022 +0000 @@ -44,10 +44,10 @@ 'ENA_submission_data'])) if "geo_location" in study['samples'][0].keys(): # sample belongs to a viral sample samples_table.write('\t'.join(['alias', 'status', 'accession', 'title', 'scientific_name', - 'taxon_id', 'sample_description', 'collection_date', - 'geographic_location', 'host_common_name', 'host_subject_id', - 'host_health_state', 'host_sex', 'host_scientific_name', - 'collector_name', 'collecting_institution', 'isolate', + 'taxon_id', 'sample_description', 'collection date', + 'geographic location (country and/or sea)', 'host common name', 'host subject id', + 'host health state', 'host sex', 'host scientific name', + 'collector name', 'collecting institution', 'isolate', 'submission_date']) + '\n') else: samples_table.write('\t'.join(['alias', 'status', 'accession', 'title', 'scientific_name',