diff mappings.py @ 2:9e2df763086c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit 1eed23745846ce215e9bdc4a4934d6bc8f41b24e"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mappings.py	Thu Jul 15 20:12:34 2021 +0000
@@ -0,0 +1,29 @@
+
+optional_samples_cols_mapping = {
+    "collection date": "collection_date",
+    "geographic location (latitude)": "geographic_location_latitude",
+    "geographic location (longitude)": "geographic_location_longitude",
+    "geographic location (region)": "geographic_location_region",
+    "sample capture status": "sample_capture_status",
+    "host disease outcome": "host_disease_outcome",
+    "host_age": "host_age",
+    "virus identifier": "virus_identifier",
+    "receipt date": "receipt_date",
+    "definition for seropositive sample": "definition_for_seropositive_sample",
+    "serotype (required for a seropositive sample)": "serotype",
+    "host habitat": "host_habitat",
+    "isolation source host-associated": "isolation_source_host_associated",
+    "host behaviour": "host_behaviour",
+    "isolation source non-host-associated": "isolation_source_non_host_associated",
+    "subject exposure": "subject_exposure",
+    "subject exposure duration": "subject_exposure_duration",
+    "type exposure": "type_exposure",
+    "personal protective equipment": "personal_protective_equipment",
+    "hospitalisation": "hospitalisation",
+    "illness duration": "illness_duration",
+    "illness symptoms": "illness_symptoms",
+    "sample storage conditions": "sample_storage_conditions",
+    "strain": "strain",
+    "host description": "host_description",
+    "gravidity": "gravidity"
+}